Sample overview of CAL51

Sample ID: Sample_02_114
Biosample type: Cell line
Tissue type: Mammary Gland
Biosample name: CAL51
Data source: NCBI GEO/SRA
GSE ID: GSE69112
Cancer type: Breast cancer
CRC number: 199
TF number of all CRCs: 46
TF list of all CRCs: HOXA10, HOXA5, HOXA9, HOXA4, FOXK1, SMAD3, TFAP2A, HOXA13, JUND, HOXA7, HOXA2, HOXA3, HOXC11, HOXC10, HOXC12, HOXA11, HOXC13, NFE2L2, HOXA6, NR2F2, HOXD8, HOXD9, TGIF1, KLF5, SREBF1, HOXB3, POU5F1, HOXA1, ZFX, RREB1, HOXB2, HOXC9, POU3F3, RFX3, ZNF217, HOXB4, MECOM, FOXD2, KLF3, GLIS3, SOX17, FOXO1, ARID5B, HOXD1, ERF, ZBED1

The most representative CRC of CAL51
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Relationship plot of CRC model
TF number of this CRC: 14
CRC socre: 151
TF list of the most representative CRC
TF name TF family Frequency of TFs
HOXA1 Homeobox 75 / 199
HOXA10 Homeobox 199 / 199
HOXA13 Homeobox 185 / 199
HOXA2 Homeobox 172 / 199
HOXA3 Homeobox 151 / 199
HOXA4 Homeobox 199 / 199
HOXA5 Homeobox 199 / 199
HOXA6 Homeobox 104 / 199
HOXA7 Homeobox 182 / 199
HOXA9 Homeobox 199 / 199
JUND TF_bZIP 185 / 199
TFAP2A AP-2 185 / 199
TGIF1 Homeobox 78 / 199
ZBED1 zf-BED 1 / 199

All CRCs of CAL51
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CRC rank TF list of CRCs CRC score TF number of CRC Detail of CRC

Frequency of TFs that appear in CRCs
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TF name Frequency of TFs TF family Ensembl ID
HOXA10 199 / 199 Homeobox ENSG00000253293
HOXA4 199 / 199 Homeobox ENSG00000197576
HOXA5 199 / 199 Homeobox ENSG00000106004
HOXA9 199 / 199 Homeobox ENSG00000078399
FOXK1 198 / 199 Fork_head ENSG00000164916
SMAD3 198 / 199 MH1 ENSG00000166949
TFAP2A 185 / 199 AP-2 ENSG00000137203
HOXA13 185 / 199 Homeobox ENSG00000106031
JUND 185 / 199 TF_bZIP ENSG00000130522
HOXA7 182 / 199 Homeobox ENSG00000122592
HOXA2 172 / 199 Homeobox ENSG00000105996
HOXA3 151 / 199 Homeobox ENSG00000105997
HOXC10 142 / 199 Homeobox ENSG00000180818
HOXC11 142 / 199 Homeobox ENSG00000123388
HOXC12 142 / 199 Homeobox ENSG00000123407
HOXA11 137 / 199 Homeobox ENSG00000005073
HOXC13 129 / 199 Homeobox ENSG00000123364
NFE2L2 112 / 199 TF_bZIP ENSG00000116044
HOXA6 104 / 199 Homeobox ENSG00000106006
NR2F2 91 / 199 RXR-like ENSG00000185551
HOXD8 81 / 199 Homeobox ENSG00000175879
HOXD9 81 / 199 Homeobox ENSG00000128709
SREBF1 78 / 199 bHLH ENSG00000072310
TGIF1 78 / 199 Homeobox ENSG00000177426
KLF5 78 / 199 zf-C2H2 ENSG00000102554
HOXB3 77 / 199 Homeobox ENSG00000120093
POU5F1 76 / 199 Pou ENSG00000204531
HOXA1 75 / 199 Homeobox ENSG00000105991
ZFX 75 / 199 zf-C2H2 ENSG00000005889
RREB1 73 / 199 zf-C2H2 ENSG00000124782
HOXB2 73 / 199 Homeobox ENSG00000173917
HOXC9 70 / 199 Homeobox ENSG00000180806
POU3F3 66 / 199 Pou ENSG00000198914
RFX3 57 / 199 RFX ENSG00000080298
ZNF217 46 / 199 zf-C2H2 ENSG00000171940
HOXB4 45 / 199 Homeobox ENSG00000182742
MECOM 39 / 199 zf-C2H2 ENSG00000085276
FOXD2 38 / 199 Fork_head ENSG00000186564
KLF3 34 / 199 zf-C2H2 ENSG00000109787
GLIS3 22 / 199 zf-C2H2 ENSG00000107249
SOX17 17 / 199 HMG ENSG00000164736
FOXO1 14 / 199 Fork_head ENSG00000150907
ARID5B 14 / 199 ARID ENSG00000150347
HOXD1 10 / 199 Homeobox ENSG00000128645
ERF 8 / 199 ETS ENSG00000105722
ZBED1 1 / 199 zf-BED ENSG00000214717

Indegree and outdegree of TFs
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TF name Indegree Outdegree Node connections
HOXC9 50 63 113
ZFX 43 63 106
FOXK1 50 67 117
GLIS3 45 54 99
JUND 49 66 115
SMAD3 50 66 116
ERF 51 42 93
SOX17 29 67 96
RREB1 43 64 107
TFAP2A 52 67 119
MECOM 51 59 110
NFE2L2 49 61 110
HOXA13 52 66 118
HOXA11 52 62 114
NR2F2 51 58 109
HOXA10 52 67 119
KLF5 44 62 106
KLF3 46 57 103
ZNF217 52 45 97
FOXO1 22 67 89
HOXB2 51 53 104
HOXA2 52 58 110
POU3F3 41 67 108
ZBED1 41 20 61
HOXD8 43 66 109
HOXD9 43 65 108
HOXB3 51 58 109
FOXD2 37 65 102
HOXD1 43 53 96
HOXB4 51 50 101
HOXC11 50 65 115
HOXC13 50 63 113
HOXC12 50 64 114
POU5F1 43 64 107
ARID5B 49 46 95
HOXC10 50 65 115
RFX3 45 65 110
HOXA7 52 60 112
HOXA6 52 55 107
HOXA5 52 64 116
HOXA4 52 63 115
HOXA3 52 61 113
HOXA9 52 67 119
HOXA1 52 56 108
SREBF1 51 60 111
TGIF1 52 54 106

Expression of TFs in all CRCs