TF information

TF name: SREBF1
TF family: bHLH
Ensembl gene ID: ENSG00000072310
Ensembl protein ID: ENSP00000411516, ENSP00000379100, ENSP00000379106, ENSP00000261646, ENSP00000348069
Entrez gene ID: 6720
Database name Link Database name Link
NCBI Gene: Genecards:
Uniprot: Wikipedia:
Cosmic 3D: Geneontology:
CCLE:

Frequency of SREBF1 in all biosamples
Sample ID Biosample type Tissue type Biosample name TF Frequency
Sample_01_022Cell lineProstateC4-2B0.52380952380952
Sample_01_059Cell lineLungPC-90.53333333333333
Sample_02_007OtherCervicalcervical-cancer_vector0.16556291390728
Sample_02_021Cell lineColonV4290.38253098875757
Sample_02_095Cell lineMammary GlandMDA-MB-4680.62334630350195
Sample_02_096Cell lineMammary GlandZR-75-1_11
Sample_02_114Cell lineMammary GlandCAL510.39195979899497
Sample_02_115Cell lineMammary GlandMCF-70.6
Sample_02_164Cell lineLungH2087_Parental0.36666666666667
Sample_02_166Cell lineMammary GlandHCC1954_Parental0.388
Sample_02_168Cell lineProstateLNCaP0.49809885931559
Sample_02_180Cell lineHuman melanomaCJM0.3046875
Sample_02_181Cell lineHuman melanomaCOLO6790.37546666666667
Sample_02_182Cell lineHuman melanomaLOX-IMVI0.34195402298851
Sample_02_184Cell lineSkinSKMEL300.067524115755627
Sample_02_192Cell lineStomachMKN450.33333333333333
Sample_02_204Cell lineStomachIM950.5
Sample_02_208Cell lineStomachYCC30.375
Sample_02_219Cell lineMammary GlandMDA-MB-2311
Sample_02_228Cell lineOesophagusKYSE5100.36346691519105
Sample_02_236Cell lineColonV2060.80745341614907
Sample_02_237Cell lineColonV3890.52733296521259
Sample_02_241Cell lineColonV4560.48532731376975
Sample_02_242Cell lineColonV4810.41161956034096
Sample_02_250TissueBraintumormodel36911
Sample_02_258OtherLungNCI-H1299_EGFP-NEO_reporter_cells_DMSO0.33333333333333
Sample_02_267Cell lineKidney786-O0.8
Sample_02_268Cell lineKidneyA-4980.49824626176851
Sample_02_280Cell lineMammary GlandSUM159_DMSO_24h0.75
Sample_02_285Cell lineLiverHuH7_untreat0.21254355400697
Sample_02_300Cell lineNeuroblastomaCLB-PE0.20512820512821
Sample_02_304Cell lineNeuroblastomaN2060.51086956521739
Sample_02_316Cell lineNeuroblastomaCHP2120.31868131868132
Sample_02_322Cell lineColonCaco-20.28532974427995
Sample_02_323Cell lineColonRKO0.9
Sample_02_354Cell lineColonColo2050.97747747747748
Sample_02_355Cell lineColonHCT150.79761904761905
Sample_02_356Cell lineColonSw4800.34838709677419
Sample_02_357Cell lineColonColo3201
Sample_02_358Cell lineColonLS1800.27646129541864
Sample_02_359Cell lineColonColo7410.34939759036145
Sample_02_395Cell lineMammary GlandBT-5490.2951048951049
Sample_02_404Cell lineMammary GlandZR-75-1_20.56834532374101
Sample_02_406Cell lineMammary GlandZR-75-30_parental0.17391304347826
Sample_02_424Cell lineColonSW6200.3768115942029

SREBF1 distribution in samples’ most representative CRC
Sample ID Tissue type Biosample type Biosample name
Sample_01_022ProstateCell lineC4-2B
Sample_01_059LungCell linePC-9
Sample_02_095Mammary GlandCell lineMDA-MB-468
Sample_02_096Mammary GlandCell lineZR-75-1_1
Sample_02_181Human melanomaCell lineCOLO679
Sample_02_204StomachCell lineIM95
Sample_02_219Mammary GlandCell lineMDA-MB-231
Sample_02_236ColonCell lineV206
Sample_02_237ColonCell lineV389
Sample_02_241ColonCell lineV456
Sample_02_250BrainTissuetumormodel3691
Sample_02_267KidneyCell line786-O
Sample_02_268KidneyCell lineA-498
Sample_02_280Mammary GlandCell lineSUM159_DMSO_24h
Sample_02_304NeuroblastomaCell lineN206
Sample_02_323ColonCell lineRKO
Sample_02_354ColonCell lineColo205
Sample_02_355ColonCell lineHCT15
Sample_02_357ColonCell lineColo320
Sample_02_404Mammary GlandCell lineZR-75-1_2
Sample_02_406Mammary GlandCell lineZR-75-30_parental

SREBF1 distribution in all CRCs
Biosample type
Biosample name
Sample ID

Genomic distribution of SEs associated with SREBF1
Download

Mutation of SREBF1
Database name Link
gnomAD: gnomAD
ExAC: ExAC
ICGC:
Database name Link
Cosmic:
Cosmic cell lines:
Depmap:

TCGA somatic mutations and clinical variants of SREBF1

rsID Chr Start Stop Ref Alt Gene_region Gene_symble Effect TCGA_Occurrence
-chr171772029617720296-TexonicSREBF1frameshift HNSC|1|512|0.00195
-chr171771815117718152GT-exonicSREBF1frameshift PCPG|1|184|0.00543
rs375059574chr171772359417723594CTexonicSREBF1synonymous STAD|1|395|0.00253,STES|1|395|0.00253
rs529689353chr171771928117719281GTexonicSREBF1nonsynonymous SARC|1|247|0.00405
-chr171772235717722357GAexonicSREBF1synonymous HNSC|1|512|0.00195
rs762042920chr171772358517723585GAexonicSREBF1synonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr171771934117719341CTexonicSREBF1nonsynonymous BRCA|1|982|0.00102
-chr171771952917719529ATexonicSREBF1nonsynonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr171771999917719999GTexonicSREBF1nonsynonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204
rs773391894chr171772375417723754CTexonicSREBF1nonsynonymous KIPAN|1|799|0.00125,KIRC|1|451|0.00222
rs754006664chr171772159517721595GAexonicSREBF1nonsynonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204,THCA|1|504|0.00198
-chr171771692317716923AGexonicSREBF1nonsynonymous BLCA|2|396|0.00505
-chr171772071917720719GAexonicSREBF1nonsynonymous BLCA|1|396|0.00253
-chr171772361017723613GGAG-exonicSREBF1frameshift LIHC|1|373|0.00268
-chr171772030117720301GAexonicSREBF1nonsynonymous CESC|1|194|0.00515
-chr171771604917716049TCexonicSREBF1nonsynonymous UCEC|1|248|0.00403
-chr171772688317726883CAexonicSREBF1nonsynonymous LUAD|1|543|0.00184
-chr171772356817723568GAexonicSREBF1nonsynonymous SKCM|1|368|0.00272
-chr171772236817722368TCexonicSREBF1nonsynonymous OV|1|469|0.00213
-chr171772248317722483AGexonicSREBF1synonymous CHOL|1|35|0.02857
-chr171772271917722719GAexonicSREBF1nonsynonymous HNSC|1|512|0.00195
-chr171772060917720609G-exonicSREBF1frameshift PCPG|1|184|0.00543
-chr171774004717740047T-exonicSREBF1frameshift TGCT|1|155|0.00645
rs776609977chr171771980817719808GAexonicSREBF1synonymous ESCA|1|185|0.00541
-chr171771824217718242GAexonicSREBF1nonsynonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204
-chr171772243317722433CTexonicSREBF1nonsynonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr171772683717726837ATexonicSREBF1nonsynonymous LUAD|1|543|0.00184
rs775151936chr171772298417722984CTexonicSREBF1synonymous STAD|1|395|0.00253,STES|1|395|0.00253
rs571282377chr171771763017717630TCexonicSREBF1nonsynonymous GBMLGG|1|820|0.00122,LGG|1|530|0.00189
-chr171771690417716904GTexonicSREBF1nonsynonymous TGCT|1|155|0.00645
-chr171772122717721227GAexonicSREBF1nonsynonymous BLCA|1|396|0.00253
-chr171771860517718605GAexonicSREBF1nonsynonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204
-chr171772359817723598TCexonicSREBF1nonsynonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr171772246117722461TCexonicSREBF1nonsynonymous KIPAN|1|799|0.00125,KIRP|1|282|0.00355
-chr171771856917718569GAexonicSREBF1nonsynonymous HNSC|2|512|0.00391
-chr171771854517718545CTexonicSREBF1nonsynonymous LUAD|1|543|0.00184
-chr171771675217716752GTexonicSREBF1synonymous BRCA|1|982|0.00102
-chr171772375817723758CTexonicSREBF1nonsynonymous GBMLGG|1|820|0.00122,LGG|1|530|0.00189
rs770190474chr171771965917719659GAexonicSREBF1synonymous LIHC|1|373|0.00268
rs776419406chr171771695017716950CTexonicSREBF1nonsynonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr171772157917721579TCexonicSREBF1nonsynonymous KIPAN|1|799|0.00125,KIRP|1|282|0.00355
-chr171772252917722529GAexonicSREBF1nonsynonymous SKCM|1|368|0.00272
-chr171772103817721038GTexonicSREBF1nonsynonymous GBM|1|290|0.00345,GBMLGG|1|820|0.00122
-chr171771671217716712TCexonicSREBF1nonsynonymous TGCT|1|155|0.00645
-chr171772690817726908CGexonicSREBF1synonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr171771818017718180GAexonicSREBF1synonymous LUAD|1|543|0.00184
rs746334705chr171772118017721180CTexonicSREBF1nonsynonymous PRAD|1|499|0.00200,UCEC|1|248|0.00403
-chr171772029617720296CGexonicSREBF1nonsynonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr171771675317716753GCexonicSREBF1nonsynonymous TGCT|1|155|0.00645
-chr171772242117722421CAexonicSREBF1nonsynonymous LUSC|1|178|0.00562
-chr171772161717721617GAexonicSREBF1synonymous SKCM|1|368|0.00272
-chr171772043917720439AGexonicSREBF1nonsynonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr171771599217715992CTexonicSREBF1nonsynonymous SKCM|1|368|0.00272
-chr171772159117721591GAexonicSREBF1nonsynonymous GBMLGG|1|820|0.00122,LGG|1|530|0.00189
rs781337368chr171771999017719990GAexonicSREBF1nonsynonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr171771928017719280GAexonicSREBF1synonymous SKCM|1|368|0.00272
-chr171772357717723577GAexonicSREBF1nonsynonymous SKCM|1|368|0.00272
-chr171771917417719174CGexonicSREBF1nonsynonymous BLCA|1|396|0.00253
-chr171772065517720655CAexonicSREBF1synonymous LUAD|1|543|0.00184
-chr171772239217722392AGexonicSREBF1nonsynonymous SARC|1|247|0.00405
-chr171771932817719328GAexonicSREBF1synonymous LIHC|1|373|0.00268
-chr171772347717723477TGexonicSREBF1synonymous PAAD|1|185|0.00541
-chr171771962417719624T-exonicSREBF1frameshift STAD|1|395|0.00253,STES|1|395|0.00253
-chr171772349417723494GAexonicSREBF1synonymous SKCM|1|368|0.00272
rs765844815chr171771992117719921GAexonicSREBF1nonsynonymous SKCM|1|368|0.00272
-chr171772235017722350GTexonicSREBF1nonsynonymous GBMLGG|1|820|0.00122,LGG|1|530|0.00189
-chr171772090217720902CAintronicSREBF1unknown PAAD|1|185|0.00541
-chr171772108717721087GAexonicSREBF1nonsynonymous SKCM|1|368|0.00272
rs115855236chr171772359517723595GAexonicSREBF1nonsynonymous DLBC|1|48|0.02083
-chr171771930117719301CGexonicSREBF1nonsynonymous HNSC|1|512|0.00195
rs566513103chr171772240717722407CTexonicSREBF1nonsynonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204
-chr171772109517721095GTexonicSREBF1nonsynonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr171771801117718011GAexonicSREBF1nonsynonymous ESCA|1|185|0.00541
-chr171771600717716007GCexonicSREBF1nonsynonymous BLCA|1|396|0.00253
-chr171772252817722528GAexonicSREBF1synonymous SKCM|1|368|0.00272
-chr171771675317716753-CexonicSREBF1frameshift KIPAN|1|799|0.00125,KIRC|1|451|0.00222
-chr171772287117722871GAexonicSREBF1nonsynonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr171772160017721600CGexonicSREBF1nonsynonymous BRCA|1|982|0.00102
-chr171772348617723486CAexonicSREBF1nonsynonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204
-chr171771672017716720CTexonicSREBF1nonsynonymous CESC|1|194|0.00515
-chr171771608917716089-GexonicSREBF1frameshift BRCA|2|982|0.00204
rs149599437chr171772364917723649GAexonicSREBF1nonsynonymous BLCA|1|396|0.00253
-chr171772164017721640GCexonicSREBF1nonsynonymous ESCA|1|185|0.00541
-chr171774004517740045G-exonicSREBF1frameshift TGCT|1|155|0.00645
-chr171772073617720736CTexonicSREBF1synonymous SKCM|1|368|0.00272
rs529460681chr171771800117718001CTexonicSREBF1nonsynonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr171772104217721042C-exonicSREBF1frameshift LIHC|1|373|0.00268
rs568851975chr171772298517722985GAexonicSREBF1nonsynonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204
-chr171771928517719285GAexonicSREBF1nonsynonymous SKCM|1|368|0.00272
-chr171772063517720635CAexonicSREBF1nonsynonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204
rs781581475chr171771861017718610CTexonicSREBF1nonsynonymous GBMLGG|1|820|0.00122,LGG|1|530|0.00189
-chr171772109417721094G-exonicSREBF1frameshift STAD|1|395|0.00253,STES|1|395|0.00253
-chr171771804317718043TAexonicSREBF1nonsynonymous ESCA|1|185|0.00541
-chr171771671117716711CAexonicSREBF1nonsynonymous PRAD|1|499|0.00200
-chr171772296417722964GTexonicSREBF1nonsynonymous HNSC|1|512|0.00195
-chr171771818417718184CTexonicSREBF1nonsynonymous LUSC|1|178|0.00562
rs781342104chr171772070017720700CTexonicSREBF1synonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr171771699117716991CTexonicSREBF1synonymous HNSC|1|512|0.00195
rs769850076chr171771674417716744GAexonicSREBF1nonsynonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr171771981317719813CTexonicSREBF1nonsynonymous LIHC|1|373|0.00268
-chr171772232717722327CTexonicSREBF1synonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204
rs142128892chr171772032317720323GAexonicSREBF1synonymous COADREAD|1|489|0.00204,READ|1|122|0.00820
-chr171772685317726853CAexonicSREBF1nonsynonymous THYM|1|123|0.00813
rs766878437chr171772032217720322CTexonicSREBF1nonsynonymous STAD|1|395|0.00253,STES|1|395|0.00253
rs377727800chr171772039917720399TCexonicSREBF1nonsynonymous LUAD|1|543|0.00184
-chr171772344617723446GAexonicSREBF1nonsynonymous CESC|1|194|0.00515
-chr171772065617720656AGexonicSREBF1nonsynonymous LUAD|1|543|0.00184
-chr171772238817722388CTexonicSREBF1nonsynonymous STAD|1|395|0.00253,STES|1|395|0.00253
rs371247619chr171772289117722891AGexonicSREBF1synonymous KIPAN|1|799|0.00125,KIRC|1|451|0.00222
-chr171772239317722393GAexonicSREBF1synonymous PAAD|1|185|0.00541
-chr171772362717723627GTexonicSREBF1synonymous HNSC|1|512|0.00195
-chr171771765017717650GCexonicSREBF1nonsynonymous GBMLGG|1|820|0.00122,LGG|1|530|0.00189

Disease information of SREBF1
TF_name Disease_name Disease_class Disease_semantic_type TF_disease_source
SREBF1 Alloxan Diabetes C18;C19 Experimental Model of Disease CTD_human
SREBF1 Diabetes Mellitus, Experimental C18;C19 Experimental Model of Disease CTD_human
SREBF1 Fatty Liver C06 Disease or Syndrome CTD_human
SREBF1 Insulin Resistance C18 Pathologic Function CTD_human
SREBF1 Kidney Failure, Chronic C12;C13 Disease or Syndrome CTD_human
SREBF1 Liver Cirrhosis, Experimental C06 Experimental Model of Disease CTD_human
SREBF1 Obesity C18;C23 Disease or Syndrome CTD_human
SREBF1 Schizophrenia F03 Mental or Behavioral Dysfunction PSYGENET
SREBF1 Streptozotocin Diabetes C18;C19 Experimental Model of Disease CTD_human
SREBF1 Non-alcoholic Fatty Liver Disease C06 Disease or Syndrome CTD_human
SREBF1 Insulin Sensitivity C18 Pathologic Function CTD_human
SREBF1 Liver carcinoma C04;C06 Neoplastic Process CTD_human
SREBF1 Steatohepatitis C06 Disease or Syndrome CTD_human
SREBF1 Nonalcoholic Steatohepatitis C06 Disease or Syndrome CTD_human

Pathway associated with SREBF1
pathway_ID pathway_name pathway_source gene_number edge_number
pathway0000069 Activation of gene expression by SREBF (SREBP) reactome 42 266
pathway0001078 ID netpath 38 213
pathway0001828 Regulation of cholesterol biosynthesis by SREBP (SREBF) reactome 15 53
pathway0001940 RORA activates gene expression reactome 27 204
pathway0001947 RXR and RAR heterodimerization with other nuclear receptor pid 26 164
pathway0002700 Hs_Signaling_of_Hepatocyte_Growth_Factor_Receptor_WP313_79946 wikipathways 15 18
pathway0002798 Hs_AMP-activated_Protein_Kinase_(AMPK)_Signaling_WP1403_90259 wikipathways 11 15
pathway0002806 Hs_Sterol_Regulatory_Element-Binding_Proteins_(SREBP)_signalling_WP1982_90425 wikipathways 15 31
pathway0002857 Hs_SREBF_and_miR33_in_cholesterol_and_lipid_homeostasis_WP2011_89947 wikipathways 6 12
pathway0002878 Hs_ID_signaling_pathway_WP53_67360 wikipathways 8 12

Go term information of SREBF1
GO_term_name GO_term_type TF_name
GO_REGULATION_OF_TRIGLYCERIDE_METABOLIC_PROCESS BP SREBF1
GO_REGULATION_OF_HISTONE_DEACETYLATION BP SREBF1
GO_REGULATION_OF_PROTEIN_DEACETYLATION BP SREBF1
GO_REGULATION_OF_HORMONE_LEVELS BP SREBF1
GO_RESPONSE_TO_FOOD BP SREBF1
GO_POSITIVE_REGULATION_OF_ALCOHOL_BIOSYNTHETIC_PROCESS BP SREBF1
GO_POSITIVE_REGULATION_OF_CELLULAR_COMPONENT_ORGANIZATION BP SREBF1
GO_REGULATION_OF_FATTY_ACID_METABOLIC_PROCESS BP SREBF1
GO_REGULATION_OF_CHOLESTEROL_BIOSYNTHETIC_PROCESS BP SREBF1
GO_POSITIVE_REGULATION_OF_STEROID_BIOSYNTHETIC_PROCESS BP SREBF1
GO_RESPONSE_TO_GLUCAGON BP SREBF1
GO_POSITIVE_REGULATION_OF_HISTONE_DEACETYLATION BP SREBF1
GO_REGULATION_OF_LIPID_METABOLIC_PROCESS BP SREBF1
GO_RESPONSE_TO_CAMP BP SREBF1
GO_NEGATIVE_REGULATION_OF_PROTEIN_SECRETION BP SREBF1
GO_POSITIVE_REGULATION_OF_TRIGLYCERIDE_BIOSYNTHETIC_PROCESS BP SREBF1
GO_POSITIVE_REGULATION_OF_CHROMATIN_MODIFICATION BP SREBF1
GO_REGULATION_OF_MITOPHAGY BP SREBF1
GO_RESPONSE_TO_PROGESTERONE BP SREBF1
GO_CELLULAR_RESPONSE_TO_FATTY_ACID BP SREBF1
GO_MRNA_TRANSCRIPTION BP SREBF1
GO_POSITIVE_REGULATION_OF_CHROMOSOME_ORGANIZATION BP SREBF1
GO_POSITIVE_REGULATION_OF_PROTEIN_DEACETYLATION BP SREBF1
GO_REGULATION_OF_STEROID_BIOSYNTHETIC_PROCESS BP SREBF1
GO_RESPONSE_TO_RETINOIC_ACID BP SREBF1
GO_REGULATION_OF_CHOLESTEROL_METABOLIC_PROCESS BP SREBF1
GO_REGULATION_OF_TRIGLYCERIDE_BIOSYNTHETIC_PROCESS BP SREBF1
GO_REGULATION_OF_ALCOHOL_BIOSYNTHETIC_PROCESS BP SREBF1
GO_POSITIVE_REGULATION_OF_TRIGLYCERIDE_METABOLIC_PROCESS BP SREBF1
GO_POSITIVE_REGULATION_OF_STEROID_METABOLIC_PROCESS BP SREBF1
GO_REGULATION_OF_PROTEIN_TARGETING BP SREBF1
GO_MRNA_TRANSCRIPTION_FROM_RNA_POLYMERASE_II_PROMOTER BP SREBF1
GO_ER_TO_GOLGI_TRANSPORT_VESICLE CC SREBF1
GO_ER_TO_GOLGI_TRANSPORT_VESICLE_MEMBRANE CC SREBF1
GO_NUCLEAR_OUTER_MEMBRANE_ENDOPLASMIC_RETICULUM_MEMBRANE_NETWORK CC SREBF1
GO_TRANSCRIPTION_FACTOR_ACTIVITY_RNA_POLYMERASE_II_CORE_PROMOTER_PROXIMAL_REGION_SEQUENCE_SPECIFIC_BINDING MF SREBF1
GO_CHROMATIN_BINDING MF SREBF1
GO_CORE_PROMOTER_PROXIMAL_REGION_DNA_BINDING MF SREBF1

Survival analysis of SREBF1



Calculate the hazards ratio based on Cox PH Model.
Add the 95% CI as dotted line.

Expression of SREBF1