Sample overview of LNCaP

Sample ID: Sample_02_168
Biosample type: Cell line
Tissue type: Prostate
Biosample name: LNCaP
Data source: NCBI GEO/SRA
GSE ID: GSE73783
Cancer type: prostate cancer
CRC number: 263
TF number of all CRCs: 35
TF list of all CRCs: EHF, FOXA1, ELF3, RXRA, NR4A1, KLF13, HOXB13, SREBF1, NFIX, MYC, KLF7, JUND, TGIF1, JUN, ZBTB16, ELK4, FOS, BHLHE40, JUNB, FOXJ3, RREB1, XBP1, ZBTB7B, HES1, MEF2D, NFIA, NR2F2, MAX, ATF3, MAFB, SP3, SPIC, MNT, TFCP2L1, ZNF217

The most representative CRC of LNCaP
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Relationship plot of CRC model
TF number of this CRC: 8
CRC socre: 159.875
TF list of the most representative CRC
TF name TF family Frequency of TFs
EHF ETS 263 / 263
ELF3 ETS 246 / 263
FOXA1 Fork_head 263 / 263
JUNB TF_bZIP 63 / 263
NR4A1 NGFIB-like 189 / 263
RREB1 zf-C2H2 56 / 263
RXRA RXR-like 193 / 263
TFCP2L1 CP2 6 / 263

All CRCs of LNCaP
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CRC rank TF list of CRCs CRC score TF number of CRC Detail of CRC

Frequency of TFs that appear in CRCs
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TF name Frequency of TFs TF family Ensembl ID
EHF 263 / 263 ETS ENSG00000135373
FOXA1 263 / 263 Fork_head ENSG00000129514
ELF3 246 / 263 ETS ENSG00000163435
RXRA 193 / 263 RXR-like ENSG00000186350
NR4A1 189 / 263 NGFIB-like ENSG00000123358
KLF13 150 / 263 zf-C2H2 ENSG00000169926
HOXB13 140 / 263 Homeobox ENSG00000159184
SREBF1 131 / 263 bHLH ENSG00000072310
NFIX 116 / 263 CTF/NFI ENSG00000008441
MYC 111 / 263 bHLH ENSG00000136997
JUND 104 / 263 TF_bZIP ENSG00000130522
KLF7 104 / 263 zf-C2H2 ENSG00000118263
TGIF1 94 / 263 Homeobox ENSG00000177426
JUN 93 / 263 TF_bZIP ENSG00000177606
ZBTB16 92 / 263 ZBTB ENSG00000109906
ELK4 86 / 263 ETS ENSG00000158711
FOS 81 / 263 TF_bZIP ENSG00000170345
BHLHE40 65 / 263 bHLH ENSG00000134107
FOXJ3 63 / 263 Fork_head ENSG00000198815
JUNB 63 / 263 TF_bZIP ENSG00000171223
RREB1 56 / 263 zf-C2H2 ENSG00000124782
XBP1 53 / 263 TF_bZIP ENSG00000100219
ZBTB7B 52 / 263 ZBTB ENSG00000160685
HES1 50 / 263 bHLH ENSG00000114315
MEF2D 48 / 263 SRF ENSG00000116604
NFIA 41 / 263 CTF/NFI ENSG00000162599
NR2F2 39 / 263 RXR-like ENSG00000185551
MAX 39 / 263 bHLH ENSG00000125952
ATF3 38 / 263 TF_bZIP ENSG00000162772
MAFB 24 / 263 TF_bZIP ENSG00000204103
SP3 22 / 263 zf-C2H2 ENSG00000172845
SPIC 20 / 263 ETS ENSG00000166211
MNT 17 / 263 bHLH ENSG00000070444
TFCP2L1 6 / 263 CP2 ENSG00000115112
ZNF217 4 / 263 zf-C2H2 ENSG00000171940

Indegree and outdegree of TFs
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TF name Indegree Outdegree Node connections
ZNF217 34 28 62
ATF3 30 41 71
JUNB 32 46 78
JUND 32 55 87
FOXJ3 27 57 84
JUN 31 51 82
ELF3 35 57 92
MAFB 20 55 75
XBP1 35 39 74
ZBTB16 36 51 87
BHLHE40 32 45 77
FOS 34 47 81
MNT 32 32 64
NR2F2 30 48 78
KLF7 32 48 80
MYC 34 49 83
RREB1 26 55 81
KLF13 34 53 87
ZBTB7B 34 47 81
SP3 19 54 73
RXRA 35 56 91
TFCP2L1 23 39 62
EHF 35 54 89
SPIC 20 54 74
HOXB13 32 52 84
NFIA 31 42 73
NR4A1 33 51 84
MAX 25 53 78
FOXA1 36 56 92
SREBF1 36 50 86
ELK4 33 44 77
MEF2D 30 47 77
HES1 31 47 78
NFIX 36 45 81
TGIF1 32 54 86

Expression of TFs in all CRCs