Sample ID | Biosample type | Tissue type | Biosample name | TF Frequency |
---|---|---|---|---|
Sample_01_068 | Cell line | Prostate: derived from metastatic site: vertebral metastasis | VCaP | 0.24657534246575 |
Sample_02_080 | Cell line | Lung | Calu-3 | 0.22727272727273 |
Sample_02_168 | Cell line | Prostate | LNCaP | 0.32699619771863 |
Sample ID | Tissue type | Biosample type | Biosample name |
---|
rsID | Chr | Start | Stop | Ref | Alt | Gene_region | Gene_symble | Effect | TCGA_Occurrence |
---|---|---|---|---|---|---|---|---|---|
- | chr1 | 205588972 | 205588972 | C | T | exonic | ELK4 | nonsynonymous | LIHC|1|373|0.00268 |
- | chr1 | 205592865 | 205592865 | T | C | exonic | ELK4 | nonsynonymous | KIPAN|1|799|0.00125,KIRC|1|451|0.00222 |
- | chr1 | 205592890 | 205592890 | C | A | exonic | ELK4 | nonsynonymous | ACC|1|90|0.01111 |
rs758673354 | chr1 | 205589767 | 205589767 | G | A | exonic | ELK4 | nonsynonymous | LUAD|1|543|0.00184 |
- | chr1 | 205589824 | 205589824 | G | T | exonic | ELK4 | nonsynonymous | BRCA|1|982|0.00102 |
- | chr1 | 205588203 | 205588203 | T | A | splicing | ELK4 | splicing | LUAD|1|543|0.00184 |
- | chr1 | 205589786 | 205589786 | G | C | exonic | ELK4 | nonsynonymous | BLCA|1|396|0.00253 |
- | chr1 | 205592904 | 205592904 | A | - | exonic | ELK4 | frameshift | BLCA|1|396|0.00253 |
- | chr1 | 205589560 | 205589560 | G | A | exonic | ELK4 | nonsynonymous | PAAD|1|185|0.00541 |
- | chr1 | 205589294 | 205589294 | C | T | exonic | ELK4 | nonsynonymous | HNSC|1|512|0.00195 |
- | chr1 | 205589034 | 205589034 | T | G | exonic | ELK4 | nonsynonymous | COADREAD|1|489|0.00204,READ|1|122|0.00820 |
- | chr1 | 205592829 | 205592829 | C | T | exonic | ELK4 | nonsynonymous | CESC|1|194|0.00515 |
- | chr1 | 205585768 | 205585768 | G | A | exonic | ELK4 | nonsynonymous | SKCM|1|368|0.00272 |
- | chr1 | 205589774 | 205589774 | T | C | exonic | ELK4 | nonsynonymous | LUAD|1|543|0.00184 |
- | chr1 | 205589519 | 205589519 | C | G | exonic | ELK4 | nonsynonymous | HNSC|1|512|0.00195 |
- | chr1 | 205589099 | 205589099 | A | - | exonic | ELK4 | frameshift | COAD|2|367|0.00545,COADREAD|2|489|0.00409,STAD|1|395|0.00253,STES|1|395|0.00253 |
- | chr1 | 205589524 | 205589524 | G | C | exonic | ELK4 | nonsynonymous | BLCA|1|396|0.00253 |
rs747854041 | chr1 | 205589407 | 205589407 | G | A | exonic | ELK4 | nonsynonymous | GBM|1|290|0.00345,GBMLGG|1|820|0.00122 |
- | chr1 | 205589867 | 205589867 | C | A | exonic | ELK4 | nonsynonymous | LUSC|1|178|0.00562 |
- | chr1 | 205585769 | 205585769 | G | T | exonic | ELK4 | nonsynonymous | UCEC|1|248|0.00403 |
- | chr1 | 205589422 | 205589422 | G | C | exonic | ELK4 | nonsynonymous | KIPAN|2|799|0.00250,KIRC|2|451|0.00443 |
- | chr1 | 205589189 | 205589189 | G | A | exonic | ELK4 | nonsynonymous | STAD|1|395|0.00253,STES|1|395|0.00253 |
- | chr1 | 205589767 | 205589767 | G | T | exonic | ELK4 | nonsynonymous | BLCA|1|396|0.00253 |
- | chr1 | 205589548 | 205589548 | G | C | exonic | ELK4 | stopgain | CESC|1|194|0.00515 |
- | chr1 | 205589704 | 205589704 | G | A | exonic | ELK4 | nonsynonymous | SKCM|1|368|0.00272 |
- | chr1 | 205588103 | 205588103 | A | G | exonic | ELK4 | synonymous | SKCM|1|368|0.00272 |
- | chr1 | 205589098 | 205589098 | - | A | exonic | ELK4 | frameshift | COAD|1|367|0.00272,COADREAD|1|489|0.00204 |
rs765720756 | chr1 | 205589082 | 205589082 | C | T | exonic | ELK4 | synonymous | COAD|1|367|0.00272,COADREAD|1|489|0.00204 |
- | chr1 | 205588962 | 205588962 | G | A | exonic | ELK4 | synonymous | SKCM|1|368|0.00272 |
rs376312178 | chr1 | 205592869 | 205592869 | G | A | exonic | ELK4 | nonsynonymous | SKCM|1|368|0.00272 |
- | chr1 | 205592886 | 205592886 | G | A | exonic | ELK4 | nonsynonymous | SKCM|2|368|0.00543 |
- | chr1 | 205585757 | 205585757 | T | C | exonic | ELK4 | nonsynonymous | HNSC|1|512|0.00195 |
- | chr1 | 205589269 | 205589269 | T | A | exonic | ELK4 | nonsynonymous | LUAD|1|543|0.00184 |
- | chr1 | 205589108 | 205589108 | C | T | exonic | ELK4 | nonsynonymous | COAD|1|367|0.00272,COADREAD|1|489|0.00204 |
- | chr1 | 205589938 | 205589938 | T | G | exonic | ELK4 | nonsynonymous | ESCA|1|185|0.00541 |
- | chr1 | 205589237 | 205589237 | C | A | exonic | ELK4 | nonsynonymous | UCEC|1|248|0.00403 |
- | chr1 | 205589662 | 205589662 | G | A | exonic | ELK4 | nonsynonymous | SKCM|1|368|0.00272 |
- | chr1 | 205589786 | 205589786 | G | A | exonic | ELK4 | stopgain | BLCA|1|396|0.00253 |
- | chr1 | 205588167 | 205588167 | G | C | exonic | ELK4 | nonsynonymous | CESC|1|194|0.00515 |
- | chr1 | 205589312 | 205589312 | G | A | exonic | ELK4 | stopgain | HNSC|1|512|0.00195 |
- | chr1 | 205588957 | 205588957 | C | G | exonic | ELK4 | stoploss | KIPAN|1|799|0.00125,KIRP|1|282|0.00355 |
- | chr1 | 205592849 | 205592849 | C | T | exonic | ELK4 | nonsynonymous | BLCA|1|396|0.00253 |
- | chr1 | 205585717 | 205585717 | G | A | exonic | ELK4 | nonsynonymous | SKCM|1|368|0.00272 |
rs765720756 | chr1 | 205589082 | 205589082 | C | A | exonic | ELK4 | synonymous | LIHC|1|373|0.00268 |
- | chr1 | 205589256 | 205589256 | G | A | exonic | ELK4 | synonymous | SKCM|2|368|0.00543 |
- | chr1 | 205589059 | 205589059 | A | C | exonic | ELK4 | nonsynonymous | PAAD|1|185|0.00541 |
- | chr1 | 205585723 | 205585723 | T | C | exonic | ELK4 | nonsynonymous | GBMLGG|1|820|0.00122,LGG|1|530|0.00189 |
- | chr1 | 205589679 | 205589679 | C | T | exonic | ELK4 | synonymous | SKCM|1|368|0.00272 |
- | chr1 | 205588164 | 205588164 | C | A | exonic | ELK4 | nonsynonymous | UCEC|1|248|0.00403 |
- | chr1 | 205592993 | 205592993 | G | A | exonic | ELK4 | synonymous | SKCM|1|368|0.00272 |
TF_name | Disease_name | Disease_class | Disease_semantic_type | TF_disease_source |
---|
pathway_ID | pathway_name | pathway_source | gene_number | edge_number |
---|---|---|---|---|
pathway0000702 | ERK cascade ( FGF8 signaling (Mouse) ) | inoh | 17 | 71 |
pathway0000703 | ERK cascade ( FGF8 signaling (Xenopus) ) | inoh | 17 | 71 |
pathway0000781 | FGF8 signaling pathway(Mouse) ( FGF8 signaling (Mouse) ) | inoh | 20 | 66 |
pathway0000782 | FGF8 signaling pathway(Xenopus) ( FGF8 signaling (Xenopus) ) | inoh | 18 | 53 |
pathway0001078 | ID | netpath | 38 | 213 |
pathway0001191 | Interleukin signaling pathway | panther | 86 | 1548 |
pathway0001604 | PDGF signaling pathway | panther | 113 | 1684 |
pathway0002044 | Signaling mediated by p38-alpha and p38-beta | pid | 35 | 174 |
pathway0002467 | ERK cascade ( PDGF signaling pathway ) | inoh | 7 | 18 |
pathway0002562 | MAPK signaling pathway | kegg | 264 | 4851 |
pathway0002750 | Hs_Serotonin_Receptor_4-6-7_and_NR3C_Signaling_WP734_74438 | wikipathways | 15 | 37 |
pathway0002834 | Hs_Serotonin_Receptor_2_and_ELK-SRF-GATA4_signaling_WP732_80010 | wikipathways | 13 | 27 |
pathway0002878 | Hs_ID_signaling_pathway_WP53_67360 | wikipathways | 8 | 12 |
GO_term_name | GO_term_type | TF_name |
---|---|---|
GO_MACROMOLECULE_DEACYLATION | BP | ELK4 |
GO_CHROMATIN_MODIFICATION | BP | ELK4 |
GO_COVALENT_CHROMATIN_MODIFICATION | BP | ELK4 |
GO_HISTONE_H3_DEACETYLATION | BP | ELK4 |