Sample ID: | Sample_02_181 |
Biosample type: | Cell line |
Tissue type: | Human melanoma |
Biosample name: | COLO679 |
Data source: | NCBI GEO/SRA |
GSE ID: | GSE75352 |
Cancer type: | melanoma |
CRC number: | 1875 |
TF number of all CRCs: | 41 |
TF list of all CRCs: | SMAD3, TGIF1, PKNOX2, NR2F2, RXRG, RARA, SOX5, SOX10, NR4A1, ETS1, TEAD1, FOXD3, RARG, ZEB1, SREBF1, NR4A2, MEIS1, DLX1, FOXD2, MEF2D, FOXO1, KLF7, TBX2, JUNB, HOXA4, EHF, SP8, BHLHE40, HIVEP2, ETV4, ETV3, CREB3L2, PRRX1, HOXA5, NFATC2, ETV5, MITF, DMRTA1, TCF7L2, POU2F1, SNAI1 |
TF name | TF family | Frequency of TFs |
---|---|---|
FOXD3 | Fork_head | 831 / 1875 |
NR2F2 | RXR-like | 1253 / 1875 |
NR4A1 | NGFIB-like | 973 / 1875 |
NR4A2 | NGFIB-like | 695 / 1875 |
PKNOX2 | Homeobox | 1396 / 1875 |
RARA | THR-like | 1131 / 1875 |
RXRG | RXR-like | 1228 / 1875 |
SMAD3 | MH1 | 1875 / 1875 |
SOX5 | HMG | 1053 / 1875 |
SREBF1 | bHLH | 704 / 1875 |
TEAD1 | TEA | 870 / 1875 |
TGIF1 | Homeobox | 1519 / 1875 |
ZEB1 | zf-C2H2 | 795 / 1875 |
CRC rank | TF list of CRCs | CRC score | TF number of CRC | Detail of CRC |
---|
TF name | Frequency of TFs | TF family | Ensembl ID |
---|---|---|---|
SMAD3 | 1875 / 1875 | MH1 | ENSG00000166949 |
TGIF1 | 1519 / 1875 | Homeobox | ENSG00000177426 |
PKNOX2 | 1396 / 1875 | Homeobox | ENSG00000165495 |
NR2F2 | 1253 / 1875 | RXR-like | ENSG00000185551 |
RXRG | 1228 / 1875 | RXR-like | ENSG00000143171 |
RARA | 1131 / 1875 | THR-like | ENSG00000131759 |
SOX5 | 1053 / 1875 | HMG | ENSG00000134532 |
SOX10 | 992 / 1875 | HMG | ENSG00000100146 |
NR4A1 | 973 / 1875 | NGFIB-like | ENSG00000123358 |
ETS1 | 957 / 1875 | ETS | ENSG00000134954 |
TEAD1 | 870 / 1875 | TEA | ENSG00000187079 |
FOXD3 | 831 / 1875 | Fork_head | ENSG00000187140 |
RARG | 822 / 1875 | THR-like | ENSG00000172819 |
ZEB1 | 795 / 1875 | zf-C2H2 | ENSG00000148516 |
SREBF1 | 704 / 1875 | bHLH | ENSG00000072310 |
NR4A2 | 695 / 1875 | NGFIB-like | ENSG00000153234 |
MEIS1 | 678 / 1875 | Homeobox | ENSG00000143995 |
DLX1 | 554 / 1875 | Homeobox | ENSG00000144355 |
FOXD2 | 554 / 1875 | Fork_head | ENSG00000186564 |
MEF2D | 543 / 1875 | SRF | ENSG00000116604 |
FOXO1 | 540 / 1875 | Fork_head | ENSG00000150907 |
KLF7 | 487 / 1875 | zf-C2H2 | ENSG00000118263 |
TBX2 | 485 / 1875 | T-box | ENSG00000121068 |
JUNB | 383 / 1875 | TF_bZIP | ENSG00000171223 |
HOXA4 | 354 / 1875 | Homeobox | ENSG00000197576 |
EHF | 335 / 1875 | ETS | ENSG00000135373 |
SP8 | 313 / 1875 | zf-C2H2 | ENSG00000164651 |
BHLHE40 | 301 / 1875 | bHLH | ENSG00000134107 |
HIVEP2 | 297 / 1875 | zf-C2H2 | ENSG00000010818 |
ETV4 | 296 / 1875 | ETS | ENSG00000175832 |
ETV3 | 193 / 1875 | ETS | ENSG00000117036 |
CREB3L2 | 190 / 1875 | TF_bZIP | ENSG00000182158 |
PRRX1 | 183 / 1875 | Homeobox | ENSG00000116132 |
HOXA5 | 163 / 1875 | Homeobox | ENSG00000106004 |
NFATC2 | 129 / 1875 | RHD | ENSG00000101096 |
ETV5 | 123 / 1875 | ETS | ENSG00000244405 |
MITF | 100 / 1875 | bHLH | ENSG00000187098 |
DMRTA1 | 92 / 1875 | DM | ENSG00000176399 |
TCF7L2 | 48 / 1875 | HMG | ENSG00000148737 |
POU2F1 | 24 / 1875 | Pou | ENSG00000143190 |
SNAI1 | 8 / 1875 | zf-C2H2 | ENSG00000124216 |
TF name | Indegree | Outdegree | Node connections |
---|---|---|---|
NFATC2 | 49 | 47 | 96 |
DMRTA1 | 42 | 46 | 88 |
NR4A2 | 41 | 68 | 109 |
JUNB | 44 | 61 | 105 |
SMAD3 | 49 | 69 | 118 |
TBX2 | 48 | 57 | 105 |
FOXO1 | 33 | 70 | 103 |
PKNOX2 | 45 | 62 | 107 |
MITF | 44 | 37 | 81 |
TEAD1 | 44 | 66 | 110 |
ETS1 | 46 | 71 | 117 |
SOX5 | 48 | 67 | 115 |
RARA | 45 | 71 | 116 |
RARG | 42 | 70 | 112 |
SOX10 | 48 | 66 | 114 |
MEIS1 | 38 | 64 | 102 |
NR2F2 | 43 | 63 | 106 |
KLF7 | 47 | 62 | 109 |
SREBF1 | 48 | 62 | 110 |
DLX1 | 40 | 55 | 95 |
SP8 | 44 | 58 | 102 |
RXRG | 46 | 60 | 106 |
NR4A1 | 45 | 63 | 108 |
FOXD2 | 41 | 60 | 101 |
FOXD3 | 43 | 70 | 113 |
EHF | 35 | 70 | 105 |
HOXA4 | 36 | 55 | 91 |
SNAI1 | 28 | 41 | 69 |
ZEB1 | 40 | 67 | 107 |
ETV3 | 40 | 47 | 87 |
ETV5 | 47 | 43 | 90 |
ETV4 | 40 | 62 | 102 |
CREB3L2 | 43 | 45 | 88 |
TCF7L2 | 23 | 68 | 91 |
BHLHE40 | 44 | 50 | 94 |
HOXA5 | 36 | 58 | 94 |
HIVEP2 | 37 | 56 | 93 |
MEF2D | 38 | 64 | 102 |
PRRX1 | 30 | 59 | 89 |
TGIF1 | 45 | 64 | 109 |
POU2F1 | 23 | 68 | 91 |