Sample ID | Biosample type | Tissue type | Biosample name | TF Frequency |
---|---|---|---|---|
Sample_02_069 | Cell line | Brain | SF268 | 0.61832061068702 |
Sample_02_114 | Cell line | Mammary Gland | CAL51 | 1 |
Sample_02_181 | Cell line | Human melanoma | COLO679 | 0.1888 |
Sample ID | Tissue type | Biosample type | Biosample name |
---|---|---|---|
Sample_02_069 | Brain | Cell line | SF268 |
Sample_02_114 | Mammary Gland | Cell line | CAL51 |
rsID | Chr | Start | Stop | Ref | Alt | Gene_region | Gene_symble | Effect | TCGA_Occurrence |
---|---|---|---|---|---|---|---|---|---|
- | chr7 | 27169167 | 27169167 | C | T | exonic | HOXA4 | nonsynonymous | SKCM|1|368|0.00272 |
- | chr7 | 27169835 | 27169835 | G | A | exonic | HOXA4 | nonsynonymous | BLCA|2|396|0.00505 |
- | chr7 | 27168930 | 27168930 | G | A | exonic | HOXA4 | nonsynonymous | SKCM|1|368|0.00272 |
- | chr7 | 27170333 | 27170333 | A | - | exonic | HOXA4 | stopgain | LIHC|1|373|0.00268 |
rs754642946 | chr7 | 27169063 | 27169063 | G | A | exonic | HOXA4 | synonymous | UCEC|1|248|0.00403 |
- | chr7 | 27168950 | 27168950 | G | A | exonic | HOXA4 | nonsynonymous | COAD|1|367|0.00272,COADREAD|1|489|0.00204 |
- | chr7 | 27168988 | 27168988 | G | T | exonic | HOXA4 | nonsynonymous | LUAD|1|543|0.00184 |
- | chr7 | 27168854 | 27168854 | G | A | exonic | HOXA4 | nonsynonymous | BRCA|1|982|0.00102 |
- | chr7 | 27168963 | 27168963 | G | A | exonic | HOXA4 | stopgain | COAD|1|367|0.00272,COADREAD|1|489|0.00204,UCEC|1|248|0.00403 |
- | chr7 | 27170284 | 27170284 | G | T | exonic | HOXA4 | stopgain | LUSC|1|178|0.00562 |
- | chr7 | 27169012 | 27169012 | G | T | exonic | HOXA4 | nonsynonymous | ESCA|1|185|0.00541 |
- | chr7 | 27169073 | 27169073 | C | T | exonic | HOXA4 | nonsynonymous | STAD|3|395|0.00759,STES|3|395|0.00759 |
- | chr7 | 27168919 | 27168919 | T | C | exonic | HOXA4 | synonymous | LUAD|1|543|0.00184 |
- | chr7 | 27168942 | 27168942 | C | T | exonic | HOXA4 | nonsynonymous | STAD|1|395|0.00253,STES|1|395|0.00253 |
rs200302499 | chr7 | 27169037 | 27169037 | C | T | exonic | HOXA4 | nonsynonymous | PAAD|1|185|0.00541,STAD|1|395|0.00253,STES|1|395|0.00253 |
- | chr7 | 27170154 | 27170154 | G | T | exonic | HOXA4 | synonymous | TGCT|1|155|0.00645 |
rs6944345 | chr7 | 27170145 | 27170145 | T | G | exonic | HOXA4 | nonsynonymous | ACC|1|90|0.01111 |
- | chr7 | 27169744 | 27169744 | G | A | exonic | HOXA4 | synonymous | LUSC|1|178|0.00562 |
- | chr7 | 27169083 | 27169083 | G | A | exonic | HOXA4 | nonsynonymous | SKCM|1|368|0.00272 |
- | chr7 | 27169165 | 27169165 | C | G | exonic | HOXA4 | nonsynonymous | SARC|1|247|0.00405 |
rs145032542 | chr7 | 27169157 | 27169157 | C | A | exonic | HOXA4 | nonsynonymous | LUAD|4|543|0.00737 |
- | chr7 | 27168851 | 27168851 | G | A | exonic | HOXA4 | nonsynonymous | SKCM|1|368|0.00272 |
- | chr7 | 27169123 | 27169123 | C | G | exonic | HOXA4 | nonsynonymous | CESC|1|194|0.00515 |
- | chr7 | 27169186 | 27169186 | G | C | exonic | HOXA4 | nonsynonymous | LUAD|1|543|0.00184 |
- | chr7 | 27169007 | 27169007 | C | A | exonic | HOXA4 | nonsynonymous | BRCA|1|982|0.00102 |
- | chr7 | 27168882 | 27168882 | G | - | exonic | HOXA4 | frameshift | COAD|1|367|0.00272,COADREAD|1|489|0.00204 |
- | chr7 | 27169068 | 27169068 | C | T | exonic | HOXA4 | nonsynonymous | CESC|1|194|0.00515 |
rs753562339 | chr7 | 27170333 | 27170333 | A | G | exonic | HOXA4 | nonsynonymous | LIHC|1|373|0.00268 |
- | chr7 | 27169104 | 27169104 | G | T | exonic | HOXA4 | nonsynonymous | STAD|1|395|0.00253,STES|1|395|0.00253 |
- | chr7 | 27168891 | 27168891 | G | A | exonic | HOXA4 | nonsynonymous | LIHC|1|373|0.00268 |
- | chr7 | 27169089 | 27169089 | G | A | exonic | HOXA4 | synonymous | GBMLGG|1|820|0.00122,LGG|1|530|0.00189 |
- | chr7 | 27170305 | 27170305 | C | T | exonic | HOXA4 | synonymous | PAAD|1|185|0.00541 |
- | chr7 | 27169172 | 27169172 | C | T | exonic | HOXA4 | nonsynonymous | BLCA|1|396|0.00253 |
rs144521145 | chr7 | 27170286 | 27170286 | A | G | exonic | HOXA4 | nonsynonymous | HNSC|1|512|0.00195 |
- | chr7 | 27169114 | 27169114 | C | T | exonic | HOXA4 | synonymous | CESC|1|194|0.00515 |
- | chr7 | 27169145 | 27169145 | G | T | exonic | HOXA4 | nonsynonymous | LUAD|1|543|0.00184 |
- | chr7 | 27168987 | 27168987 | G | A | exonic | HOXA4 | nonsynonymous | PAAD|1|185|0.00541 |
- | chr7 | 27168859 | 27168859 | A | T | exonic | HOXA4 | synonymous | UVM|1|80|0.01250 |
- | chr7 | 27170293 | 27170293 | G | A | exonic | HOXA4 | synonymous | CESC|1|194|0.00515 |
- | chr7 | 27169043 | 27169043 | G | A | exonic | HOXA4 | nonsynonymous | CESC|1|194|0.00515 |
- | chr7 | 27169077 | 27169077 | G | A | exonic | HOXA4 | nonsynonymous | PRAD|1|499|0.00200 |
- | chr7 | 27169137 | 27169137 | G | T | exonic | HOXA4 | synonymous | SKCM|1|368|0.00272 |
- | chr7 | 27169017 | 27169017 | G | C | exonic | HOXA4 | nonsynonymous | HNSC|1|512|0.00195 |
- | chr7 | 27170241 | 27170241 | C | T | exonic | HOXA4 | nonsynonymous | STAD|1|395|0.00253,STES|1|395|0.00253 |
- | chr7 | 27169030 | 27169030 | G | C | exonic | HOXA4 | synonymous | LUSC|1|178|0.00562 |
- | chr7 | 27170323 | 27170323 | G | T | exonic | HOXA4 | synonymous | ESCA|1|185|0.00541 |
- | chr7 | 27169084 | 27169084 | G | A | exonic | HOXA4 | synonymous | SKCM|1|368|0.00272 |
- | chr7 | 27169151 | 27169151 | C | T | exonic | HOXA4 | nonsynonymous | UCEC|1|248|0.00403 |
rs577912292 | chr7 | 27169062 | 27169062 | C | T | exonic | HOXA4 | nonsynonymous | UCS|1|57|0.01754 |
- | chr7 | 27169057 | 27169057 | G | A | exonic | HOXA4 | synonymous | PRAD|1|499|0.00200 |
TF_name | Disease_name | Disease_class | Disease_semantic_type | TF_disease_source |
---|---|---|---|---|
HOXA4 | Malignant neoplasm of breast | C04;C17 | Neoplastic Process | UNIPROT |
pathway_ID | pathway_name | pathway_source | gene_number | edge_number |
---|
GO_term_name | GO_term_type | TF_name |
---|