Sample ID | Biosample type | Tissue type | Biosample name | TF Frequency |
---|---|---|---|---|
Sample_01_001 | Cell line | Prostate | 22Rv1 | 0.45278450363196 |
Sample_01_022 | Cell line | Prostate | C4-2B | 0.19047619047619 |
Sample_02_021 | Cell line | Colon | V429 | 0.48083021043528 |
Sample_02_069 | Cell line | Brain | SF268 | 0.90076335877863 |
Sample_02_114 | Cell line | Mammary Gland | CAL51 | 1 |
Sample_02_179 | Cell line | Urinary bladder | T24 | 0.3448275862069 |
Sample_02_242 | Cell line | Colon | V481 | 0.54579247580593 |
Sample_02_268 | Cell line | Kidney | A-498 | 0.33044120361824 |
Sample_02_323 | Cell line | Colon | RKO | 1 |
Sample_02_355 | Cell line | Colon | HCT15 | 1 |
Sample_02_356 | Cell line | Colon | Sw480 | 0.91612903225806 |
Sample_02_358 | Cell line | Colon | LS180 | 0.99565560821485 |
Sample_02_361 | Cell line | Colon | HT29_DMSO | 0.6283185840708 |
Sample_02_424 | Cell line | Colon | SW620 | 1 |
Sample ID | Tissue type | Biosample type | Biosample name |
---|---|---|---|
Sample_02_069 | Brain | Cell line | SF268 |
Sample_02_114 | Mammary Gland | Cell line | CAL51 |
Sample_02_242 | Colon | Cell line | V481 |
Sample_02_323 | Colon | Cell line | RKO |
Sample_02_355 | Colon | Cell line | HCT15 |
Sample_02_356 | Colon | Cell line | Sw480 |
Sample_02_358 | Colon | Cell line | LS180 |
Sample_02_361 | Colon | Cell line | HT29_DMSO |
Sample_02_424 | Colon | Cell line | SW620 |
rsID | Chr | Start | Stop | Ref | Alt | Gene_region | Gene_symble | Effect | TCGA_Occurrence |
---|---|---|---|---|---|---|---|---|---|
- | chr7 | 27212979 | 27212980 | TT | - | exonic | HOXA10 | frameshift | STAD|2|395|0.00506,STES|2|395|0.00506 |
- | chr7 | 27211545 | 27211545 | C | G | exonic | HOXA10 | nonsynonymous | BLCA|1|396|0.00253 |
- | chr7 | 27211533 | 27211533 | G | - | exonic | HOXA10 | frameshift | KIPAN|1|799|0.00125,KIRC|1|451|0.00222 |
- | chr7 | 27213291 | 27213291 | C | T | exonic | HOXA10 | nonsynonymous | ESCA|1|185|0.00541 |
- | chr7 | 27213851 | 27213851 | G | T | exonic | HOXA10 | synonymous | LUAD|1|543|0.00184 |
- | chr7 | 27211677 | 27211677 | A | G | exonic | HOXA10 | synonymous | LIHC|1|373|0.00268 |
- | chr7 | 27213855 | 27213855 | G | T | exonic | HOXA10 | nonsynonymous | LUSC|1|178|0.00562 |
- | chr7 | 27211712 | 27211712 | G | T | exonic | HOXA10 | nonsynonymous | LIHC|1|373|0.00268 |
- | chr7 | 27213495 | 27213495 | G | - | exonic | HOXA10 | frameshift | THYM|1|123|0.00813 |
rs752718123 | chr7 | 27213858 | 27213858 | C | A | exonic | HOXA10 | nonsynonymous | LUAD|1|543|0.00184 |
- | chr7 | 27211696 | 27211696 | T | C | exonic | HOXA10 | nonsynonymous | KIPAN|1|799|0.00125,KIRP|1|282|0.00355 |
- | chr7 | 27211592 | 27211592 | G | A | exonic | HOXA10 | nonsynonymous | LUAD|1|543|0.00184 |
- | chr7 | 27213491 | 27213491 | C | A | exonic | HOXA10 | synonymous | BRCA|1|982|0.00102 |
- | chr7 | 27213793 | 27213793 | C | G | exonic | HOXA10 | nonsynonymous | LUSC|1|178|0.00562 |
- | chr7 | 27213050 | 27213050 | C | A | exonic | HOXA10 | synonymous | LUAD|1|543|0.00184 |
- | chr7 | 27213428 | 27213428 | C | A | exonic | HOXA10 | nonsynonymous | COAD|1|367|0.00272,COADREAD|1|489|0.00204 |
- | chr7 | 27211670 | 27211670 | G | T | exonic | HOXA10 | nonsynonymous | BLCA|1|396|0.00253 |
- | chr7 | 27213894 | 27213894 | G | A | exonic | HOXA10 | nonsynonymous | BLCA|2|396|0.00505 |
- | chr7 | 27213918 | 27213918 | G | A | exonic | HOXA10 | nonsynonymous | UCEC|1|248|0.00403 |
- | chr7 | 27213231 | 27213231 | C | - | exonic | HOXA10 | frameshift | PRAD|1|499|0.00200 |
- | chr7 | 27213919 | 27213919 | C | T | exonic | HOXA10 | nonsynonymous | GBMLGG|1|820|0.00122,LGG|1|530|0.00189 |
- | chr7 | 27211646 | 27211646 | T | C | exonic | HOXA10 | nonsynonymous | BLCA|1|396|0.00253 |
- | chr7 | 27213351 | 27213351 | G | A | exonic | HOXA10 | nonsynonymous | LUAD|1|543|0.00184 |
rs201915532 | chr7 | 27213228 | 27213228 | G | A | exonic | HOXA10 | nonsynonymous | ACC|1|90|0.01111 |
- | chr7 | 27213837 | 27213837 | A | - | exonic | HOXA10 | frameshift | STAD|1|395|0.00253,STES|1|395|0.00253 |
- | chr7 | 27211519 | 27211519 | C | T | exonic | HOXA10 | synonymous | LUAD|1|543|0.00184 |
- | chr7 | 27211695 | 27211695 | C | T | exonic | HOXA10 | synonymous | KIPAN|1|799|0.00125,KIRP|1|282|0.00355 |
- | chr7 | 27213355 | 27213355 | - | G | exonic | HOXA10 | frameshift | LIHC|1|373|0.00268 |
- | chr7 | 27211532 | 27211532 | A | T | exonic | HOXA10 | nonsynonymous | LUAD|1|543|0.00184 |
- | chr7 | 27213044 | 27213044 | C | A | exonic | HOXA10 | synonymous | LUAD|1|543|0.00184 |
- | chr7 | 27213459 | 27213459 | G | C | exonic | HOXA10 | nonsynonymous | STAD|1|395|0.00253,STES|1|395|0.00253 |
rs774090455 | chr7 | 27213842 | 27213842 | A | G | exonic | HOXA10 | synonymous | LUAD|1|543|0.00184 |
- | chr7 | 27211732 | 27211732 | C | A | exonic | HOXA10 | nonsynonymous | LUSC|1|178|0.00562 |
rs751118803 | chr7 | 27211780 | 27211780 | C | T | exonic | HOXA10 | nonsynonymous | THCA|1|504|0.00198 |
- | chr7 | 27213854 | 27213854 | G | A | exonic | HOXA10 | synonymous | PAAD|1|185|0.00541 |
- | chr7 | 27213774 | 27213774 | C | - | exonic | HOXA10 | frameshift | STAD|1|395|0.00253,STES|1|395|0.00253 |
- | chr7 | 27211577 | 27211577 | T | G | exonic | HOXA10 | nonsynonymous | COAD|1|367|0.00272,COADREAD|1|489|0.00204 |
- | chr7 | 27211693 | 27211694 | TT | - | exonic | HOXA10 | frameshift | UCEC|1|248|0.00403 |
- | chr7 | 27212969 | 27212969 | C | A | exonic | HOXA10 | synonymous | LUAD|1|543|0.00184 |
- | chr7 | 27211758 | 27211758 | G | A | exonic | HOXA10 | synonymous | BRCA|1|982|0.00102 |
- | chr7 | 27211618 | 27211618 | C | T | exonic | HOXA10 | nonsynonymous | BLCA|1|396|0.00253 |
- | chr7 | 27211672 | 27211672 | T | C | exonic | HOXA10 | nonsynonymous | UCEC|1|248|0.00403 |
- | chr7 | 27213368 | 27213368 | G | T | exonic | HOXA10 | synonymous | LUAD|1|543|0.00184 |
TF_name | Disease_name | Disease_class | Disease_semantic_type | TF_disease_source |
---|---|---|---|---|
HOXA10 | Adenocarcinoma | C04 | Neoplastic Process | CTD_human |
HOXA10 | Endometrial Neoplasms | C04;C13 | Neoplastic Process | CTD_human |
HOXA10 | Adenocarcinoma, Basal Cell | C04 | Neoplastic Process | CTD_human |
HOXA10 | Adenocarcinoma, Oxyphilic | C04 | Neoplastic Process | CTD_human |
HOXA10 | Carcinoma, Cribriform | C04 | Neoplastic Process | CTD_human |
HOXA10 | Carcinoma, Granular Cell | C04 | Neoplastic Process | CTD_human |
HOXA10 | Adenocarcinoma, Tubular | C04 | Neoplastic Process | CTD_human |
HOXA10 | Endometrial Carcinoma | C04;C13 | Neoplastic Process | CTD_human |
HOXA10 | Female Urogenital Diseases | C13 | Disease or Syndrome | CTD_human |
pathway_ID | pathway_name | pathway_source | gene_number | edge_number |
---|---|---|---|---|
pathway0002035 | Signaling events mediated by HDAC Class III | pid | 41 | 421 |
GO_term_name | GO_term_type | TF_name |
---|---|---|
GO_SINGLE_FERTILIZATION | BP | HOXA10 |
GO_POSITIVE_REGULATION_OF_BIOSYNTHETIC_PROCESS | BP | HOXA10 |
GO_PROXIMAL_DISTAL_PATTERN_FORMATION | BP | HOXA10 |
GO_APPENDAGE_DEVELOPMENT | BP | HOXA10 |
GO_UTERUS_DEVELOPMENT | BP | HOXA10 |