Sample ID: | Sample_02_361 |
Biosample type: | Cell line |
Tissue type: | Colon |
Biosample name: | HT29_DMSO |
Data source: | NCBI GEO/SRA |
GSE ID: | GSE77039 |
Cancer type: | colorectal adenocarcinoma |
CRC number: | 565 |
TF number of all CRCs: | 41 |
TF list of all CRCs: | SMAD3, KLF5, EHF, TCF7L2, RARA, CDX2, HOXA10, IRF1, MAFK, FOXP1, TGIF1, KLF3, TEAD1, MYB, JUNB, FOXA1, FOXQ1, SOX13, RXRA, KLF12, YY1, HES1, HOXA11, RARG, HOXA5, ZBTB7B, MYC, BHLHE41, GATA6, FOSL2, CREB3L1, NFIA, MNX1, MECOM, CEBPA, HOXA3, ETS2, CEBPB, HNF1B, HOXA6, ZNF217 |
TF name | TF family | Frequency of TFs |
---|---|---|
CDX2 | Homeobox | 477 / 565 |
EHF | ETS | 565 / 565 |
FOXQ1 | Fork_head | 211 / 565 |
HES1 | bHLH | 168 / 565 |
HOXA10 | Homeobox | 355 / 565 |
IRF1 | IRF | 317 / 565 |
JUNB | TF_bZIP | 245 / 565 |
KLF3 | zf-C2H2 | 296 / 565 |
KLF5 | zf-C2H2 | 565 / 565 |
MAFK | TF_bZIP | 314 / 565 |
RARA | THR-like | 485 / 565 |
RXRA | RXR-like | 193 / 565 |
SMAD3 | MH1 | 565 / 565 |
SOX13 | HMG | 209 / 565 |
TCF7L2 | HMG | 565 / 565 |
TGIF1 | Homeobox | 298 / 565 |
CRC rank | TF list of CRCs | CRC score | TF number of CRC | Detail of CRC |
---|
TF name | Frequency of TFs | TF family | Ensembl ID |
---|---|---|---|
KLF5 | 565 / 565 | zf-C2H2 | ENSG00000102554 |
SMAD3 | 565 / 565 | MH1 | ENSG00000166949 |
TCF7L2 | 565 / 565 | HMG | ENSG00000148737 |
EHF | 565 / 565 | ETS | ENSG00000135373 |
RARA | 485 / 565 | THR-like | ENSG00000131759 |
CDX2 | 477 / 565 | Homeobox | ENSG00000165556 |
HOXA10 | 355 / 565 | Homeobox | ENSG00000253293 |
IRF1 | 317 / 565 | IRF | ENSG00000125347 |
MAFK | 314 / 565 | TF_bZIP | ENSG00000198517 |
FOXP1 | 314 / 565 | Fork_head | ENSG00000114861 |
TGIF1 | 298 / 565 | Homeobox | ENSG00000177426 |
KLF3 | 296 / 565 | zf-C2H2 | ENSG00000109787 |
TEAD1 | 270 / 565 | TEA | ENSG00000187079 |
MYB | 267 / 565 | MYB | ENSG00000118513 |
JUNB | 245 / 565 | TF_bZIP | ENSG00000171223 |
FOXA1 | 225 / 565 | Fork_head | ENSG00000129514 |
FOXQ1 | 211 / 565 | Fork_head | ENSG00000164379 |
SOX13 | 209 / 565 | HMG | ENSG00000143842 |
RXRA | 193 / 565 | RXR-like | ENSG00000186350 |
KLF12 | 183 / 565 | zf-C2H2 | ENSG00000118922 |
YY1 | 169 / 565 | zf-C2H2 | ENSG00000100811 |
HES1 | 168 / 565 | bHLH | ENSG00000114315 |
HOXA11 | 153 / 565 | Homeobox | ENSG00000005073 |
RARG | 152 / 565 | THR-like | ENSG00000172819 |
HOXA5 | 143 / 565 | Homeobox | ENSG00000106004 |
ZBTB7B | 120 / 565 | ZBTB | ENSG00000160685 |
MYC | 119 / 565 | bHLH | ENSG00000136997 |
BHLHE41 | 119 / 565 | bHLH | ENSG00000123095 |
GATA6 | 116 / 565 | zf-GATA | ENSG00000141448 |
FOSL2 | 115 / 565 | TF_bZIP | ENSG00000075426 |
CREB3L1 | 105 / 565 | TF_bZIP | ENSG00000157613 |
NFIA | 102 / 565 | CTF/NFI | ENSG00000162599 |
MNX1 | 97 / 565 | Homeobox | ENSG00000130675 |
MECOM | 80 / 565 | zf-C2H2 | ENSG00000085276 |
CEBPA | 70 / 565 | TF_bZIP | ENSG00000245848 |
HOXA3 | 68 / 565 | Homeobox | ENSG00000105997 |
ETS2 | 64 / 565 | ETS | ENSG00000157557 |
CEBPB | 57 / 565 | TF_bZIP | ENSG00000172216 |
HNF1B | 52 / 565 | Homeobox | ENSG00000275410 |
HOXA6 | 24 / 565 | Homeobox | ENSG00000106006 |
ZNF217 | 17 / 565 | zf-C2H2 | ENSG00000171940 |
TF name | Indegree | Outdegree | Node connections |
---|---|---|---|
ZNF217 | 42 | 34 | 76 |
FOXP1 | 40 | 62 | 102 |
YY1 | 36 | 61 | 97 |
JUNB | 38 | 59 | 97 |
SMAD3 | 43 | 63 | 106 |
MAFK | 38 | 63 | 101 |
TEAD1 | 39 | 60 | 99 |
MNX1 | 40 | 48 | 88 |
RARA | 41 | 63 | 104 |
ETS2 | 43 | 46 | 89 |
CEBPA | 37 | 49 | 86 |
RARG | 35 | 63 | 98 |
MECOM | 39 | 53 | 92 |
BHLHE41 | 41 | 51 | 92 |
SOX13 | 36 | 61 | 97 |
HOXA11 | 40 | 52 | 92 |
HNF1B | 28 | 59 | 87 |
HOXA10 | 40 | 62 | 102 |
KLF5 | 43 | 63 | 106 |
CREB3L1 | 39 | 49 | 88 |
FOSL2 | 37 | 55 | 92 |
KLF3 | 39 | 57 | 96 |
MYC | 38 | 59 | 97 |
MYB | 39 | 61 | 100 |
FOXQ1 | 41 | 57 | 98 |
CEBPB | 34 | 50 | 84 |
ZBTB7B | 37 | 55 | 92 |
RXRA | 37 | 62 | 99 |
EHF | 43 | 63 | 106 |
KLF12 | 37 | 60 | 97 |
GATA6 | 41 | 48 | 89 |
IRF1 | 37 | 63 | 100 |
NFIA | 36 | 52 | 88 |
CDX2 | 41 | 60 | 101 |
HOXA3 | 30 | 51 | 81 |
TCF7L2 | 43 | 63 | 106 |
FOXA1 | 41 | 58 | 99 |
HOXA6 | 38 | 36 | 74 |
HOXA5 | 38 | 55 | 93 |
HES1 | 39 | 50 | 89 |
TGIF1 | 40 | 60 | 100 |