Cancer CRCdb

Sample ID	Biosample type	Tissue type	Biosample name	TF Frequency
Sample_02_021	Cell line	Colon	V429	0.038627846641683
Sample_02_069	Cell line	Brain	SF268	0.22900763358779
Sample_02_114	Cell line	Mammary Gland	CAL51	0.52261306532663
Sample_02_179	Cell line	Urinary bladder	T24	0.068965517241379
Sample_02_361	Cell line	Colon	HT29_DMSO	0.042477876106195

Sample ID	Tissue type	Biosample type	Biosample name
Sample_02_114	Mammary Gland	Cell line	CAL51

Database name	Link
gnomAD:	gnomAD
ExAC:	ExAC
ICGC:

Database name	Link
Cosmic:
Cosmic cell lines:
Depmap:

TCGA somatic mutations and clinical variants of HOXA6

rsID	Chr	Start	Stop	Ref	Alt	Gene_region	Gene_symble	Effect	TCGA_Occurrence
-	chr7	27185431	27185431	C	T	exonic	HOXA6	nonsynonymous	BLCA\|1\|396\|0.00253,COAD\|1\|367\|0.00272,COADREAD\|1\|489\|0.00204
-	chr7	27185407	27185407	G	A	exonic	HOXA6	nonsynonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr7	27186993	27186993	C	T	exonic	HOXA6	nonsynonymous	SKCM\|1\|368\|0.00272
-	chr7	27187208	27187208	G	T	exonic	HOXA6	stopgain	GBMLGG\|1\|820\|0.00122,LGG\|1\|530\|0.00189
-	chr7	27185521	27185521	C	T	exonic	HOXA6	nonsynonymous	GBMLGG\|1\|820\|0.00122,LGG\|1\|530\|0.00189
-	chr7	27185359	27185359	C	T	exonic	HOXA6	nonsynonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr7	27187001	27187001	A	G	exonic	HOXA6	nonsynonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
rs753984515	chr7	27186987	27186987	C	T	exonic	HOXA6	nonsynonymous	COADREAD\|1\|489\|0.00204,READ\|1\|122\|0.00820
rs144914171	chr7	27187120	27187120	C	T	exonic	HOXA6	synonymous	SKCM\|1\|368\|0.00272
-	chr7	27187000	27187000	G	A	exonic	HOXA6	synonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr7	27185363	27185363	G	A	exonic	HOXA6	nonsynonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr7	27187114	27187114	G	A	exonic	HOXA6	synonymous	BLCA\|1\|396\|0.00253
rs759658560	chr7	27187135	27187135	A	G	exonic	HOXA6	synonymous	UCEC\|1\|248\|0.00403
-	chr7	27187355	27187355	A	G	exonic	HOXA6	nonsynonymous	SKCM\|1\|368\|0.00272
-	chr7	27187352	27187352	A	G	exonic	HOXA6	nonsynonymous	COAD\|1\|367\|0.00272,COADREAD\|1\|489\|0.00204
rs750134271	chr7	27185451	27185451	G	C	exonic	HOXA6	nonsynonymous	BRCA\|1\|982\|0.00102
-	chr7	27187309	27187309	G	A	exonic	HOXA6	synonymous	SKCM\|1\|368\|0.00272
-	chr7	27187306	27187306	G	T	exonic	HOXA6	nonsynonymous	BLCA\|1\|396\|0.00253
-	chr7	27187315	27187315	C	T	exonic	HOXA6	synonymous	SKCM\|1\|368\|0.00272
-	chr7	27187241	27187241	C	T	exonic	HOXA6	nonsynonymous	SKCM\|2\|368\|0.00543
-	chr7	27185435	27185435	G	A	exonic	HOXA6	nonsynonymous	GBM\|1\|290\|0.00345,GBMLGG\|1\|820\|0.00122
-	chr7	27186946	27186946	C	T	exonic	HOXA6	synonymous	LUAD\|1\|543\|0.00184
-	chr7	27187081	27187081	C	G	exonic	HOXA6	nonsynonymous	BLCA\|2\|396\|0.00505
-	chr7	27185469	27185469	C	T	exonic	HOXA6	synonymous	SKCM\|1\|368\|0.00272
-	chr7	27187351	27187351	C	T	exonic	HOXA6	synonymous	OV\|1\|469\|0.00213
rs750134271	chr7	27185451	27185451	G	A	exonic	HOXA6	synonymous	SKCM\|1\|368\|0.00272
rs754446958	chr7	27187127	27187127	G	C	exonic	HOXA6	nonsynonymous	CHOL\|1\|35\|0.02857
-	chr7	27187138	27187138	C	T	exonic	HOXA6	synonymous	LUAD\|1\|543\|0.00184
-	chr7	27185314	27185314	G	C	exonic	HOXA6	nonsynonymous	LUAD\|1\|543\|0.00184
-	chr7	27187096	27187096	C	A	exonic	HOXA6	synonymous	LIHC\|1\|373\|0.00268
-	chr7	27186942	27186942	T	G	exonic	HOXA6	nonsynonymous	GBM\|1\|290\|0.00345,GBMLGG\|1\|820\|0.00122
rs759859340	chr7	27185490	27185490	C	T	exonic	HOXA6	synonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr7	27186946	27186946	C	A	exonic	HOXA6	nonsynonymous	LUAD\|1\|543\|0.00184
-	chr7	27185462	27185462	C	A	exonic	HOXA6	stopgain	COAD\|1\|367\|0.00272,COADREAD\|1\|489\|0.00204
-	chr7	27185535	27185535	A	G	exonic	HOXA6	synonymous	HNSC\|1\|512\|0.00195
-	chr7	27187047	27187047	C	T	exonic	HOXA6	nonsynonymous	COAD\|1\|367\|0.00272,COADREAD\|1\|489\|0.00204
rs781019309	chr7	27185328	27185328	G	A	exonic	HOXA6	synonymous	LUAD\|1\|543\|0.00184
-	chr7	27185503	27185503	C	T	exonic	HOXA6	nonsynonymous	BLCA\|1\|396\|0.00253
-	chr7	27185319	27185319	C	T	exonic	HOXA6	synonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr7	27185519	27185519	G	A	exonic	HOXA6	nonsynonymous	CESC\|1\|194\|0.00515
rs776113892	chr7	27187306	27187306	G	A	exonic	HOXA6	synonymous	SKCM\|2\|368\|0.00543
rs774234211	chr7	27186965	27186965	G	A	exonic	HOXA6	nonsynonymous	COAD\|1\|367\|0.00272,COADREAD\|1\|489\|0.00204
-	chr7	27187160	27187160	G	T	exonic	HOXA6	nonsynonymous	LUAD\|2\|543\|0.00368
-	chr7	27185382	27185382	G	C	exonic	HOXA6	nonsynonymous	GBM\|1\|290\|0.00345,GBMLGG\|1\|820\|0.00122
-	chr7	27185344	27185344	T	-	exonic	HOXA6	frameshift	THCA\|1\|504\|0.00198
rs761372561	chr7	27185513	27185513	G	A	exonic	HOXA6	nonsynonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr7	27185425	27185425	C	T	exonic	HOXA6	nonsynonymous	COADREAD\|1\|489\|0.00204,READ\|1\|122\|0.00820,UCEC\|1\|248\|0.00403
-	chr7	27187267	27187267	C	G	exonic	HOXA6	synonymous	LUAD\|1\|543\|0.00184
-	chr7	27187201	27187201	A	G	exonic	HOXA6	synonymous	UCEC\|1\|248\|0.00403
-	chr7	27187272	27187272	C	T	exonic	HOXA6	nonsynonymous	LUSC\|1\|178\|0.00562
-	chr7	27185408	27185408	C	T	exonic	HOXA6	nonsynonymous	UCEC\|1\|248\|0.00403
rs758732272	chr7	27186928	27186928	C	T	exonic	HOXA6	synonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr7	27185314	27185314	G	T	exonic	HOXA6	nonsynonymous	UCEC\|1\|248\|0.00403
rs139581191	chr7	27186944	27186944	C	T	exonic	HOXA6	nonsynonymous	UCEC\|1\|248\|0.00403
-	chr7	27187097	27187097	G	A	exonic	HOXA6	nonsynonymous	BLCA\|1\|396\|0.00253,SKCM\|1\|368\|0.00272
-	chr7	27185361	27185361	G	C	exonic	HOXA6	synonymous	LUAD\|1\|543\|0.00184

TF name:	HOXA6
TF family:	Homeobox
Ensembl gene ID:	ENSG00000106006
Ensembl protein ID:	ENSP00000222728
Entrez gene ID:	3203

Database name	Link	Database name	Link
NCBI Gene:		Genecards:
Uniprot:		Wikipedia:
Cosmic 3D:		Geneontology:
CCLE:

GO_term_name	GO_term_type	TF_name
GO_EMBRYONIC_SKELETAL_SYSTEM_MORPHOGENESIS	BP	HOXA6
GO_EMBRYONIC_ORGAN_DEVELOPMENT	BP	HOXA6

TF information

TCGA somatic mutations and clinical variants of HOXA6

Survival analysis of HOXA6

Expression of HOXA6