TF information

TF name: HOXC10
TF family: Homeobox
Ensembl gene ID: ENSG00000180818
Ensembl protein ID: ENSP00000307321
Entrez gene ID: 3226
Database name Link Database name Link
NCBI Gene: Genecards:
Uniprot: Wikipedia:
Cosmic 3D: Geneontology:
CCLE:

Frequency of HOXC10 in all biosamples
Sample ID Biosample type Tissue type Biosample name TF Frequency
Sample_02_069Cell lineBrainSF2680.59541984732824
Sample_02_079Cell lineMammary GlandT-47D_10.66666666666667
Sample_02_114Cell lineMammary GlandCAL510.71356783919598
Sample_02_187Cell lineStomachKATOIII0.66666666666667
Sample_02_189Cell lineStomachSNU0160.5
Sample_02_296Cell lineNeuroblastomaCLB-BER-Lud0.77199693955624
Sample_02_394Cell lineMammary GlandT-47D_20.30769230769231
Sample_02_395Cell lineMammary GlandBT-5490.82237762237762
Sample_02_403Cell lineMammary GlandT-47D_untreat0.89772727272727
Sample_02_404Cell lineMammary GlandZR-75-1_20.61870503597122

HOXC10 distribution in samples’ most representative CRC
Sample ID Tissue type Biosample type Biosample name
Sample_02_069BrainCell lineSF268
Sample_02_187StomachCell lineKATOIII
Sample_02_189StomachCell lineSNU016
Sample_02_296NeuroblastomaCell lineCLB-BER-Lud
Sample_02_395Mammary GlandCell lineBT-549
Sample_02_403Mammary GlandCell lineT-47D_untreat

HOXC10 distribution in all CRCs
Biosample type
Biosample name
Sample ID

Genomic distribution of SEs associated with HOXC10
Download

Mutation of HOXC10
Database name Link
gnomAD: gnomAD
ExAC: ExAC
ICGC:
Database name Link
Cosmic:
Cosmic cell lines:
Depmap:

TCGA somatic mutations and clinical variants of HOXC10

rsID Chr Start Stop Ref Alt Gene_region Gene_symble Effect TCGA_Occurrence
-chr125437909754379097GAexonicHOXC10synonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr125438334254383342-AUTR3HOXC10unknown ESCA|1|185|0.00541
rs368239850chr125437952754379527CTexonicHOXC10nonsynonymous UCEC|1|248|0.00403
-chr125438317954383179GAexonicHOXC10nonsynonymous BRCA|1|982|0.00102
rs776717205chr125437930254379302CTexonicHOXC10nonsynonymous SKCM|1|368|0.00272
-chr125437966554379665-CexonicHOXC10frameshift COAD|1|367|0.00272,COADREAD|1|489|0.00204
-chr125437933254379332TCexonicHOXC10nonsynonymous TGCT|1|155|0.00645
-chr125438345454383454GCUTR3HOXC10unknown SARC|1|247|0.00405
rs757985930chr125437919454379194CTexonicHOXC10nonsynonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204
-chr125438337154383371TAUTR3HOXC10unknown ESCA|1|185|0.00541
-chr125437906954379069CTexonicHOXC10nonsynonymous LUSC|1|178|0.00562
-chr125437975854379758GAexonicHOXC10nonsynonymous UCEC|1|248|0.00403
-chr125437955454379554GAexonicHOXC10nonsynonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr125438374654383746CTUTR3HOXC10unknown CESC|1|194|0.00515
-chr125438320554383205TCexonicHOXC10nonsynonymous LUSC|1|178|0.00562
-chr125438310754383107CTexonicHOXC10synonymous KIPAN|1|799|0.00125,KIRC|1|451|0.00222
rs377534424chr125438319854383198CTexonicHOXC10nonsynonymous UCEC|1|248|0.00403
-chr125437911354379113CTexonicHOXC10nonsynonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204
-chr125438306754383067TGexonicHOXC10nonsynonymous UCEC|1|248|0.00403
rs755531147chr125437940354379403GAexonicHOXC10synonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204,UCEC|1|248|0.00403
-chr125437964754379647CAexonicHOXC10nonsynonymous LUAD|1|543|0.00184
rs145093077chr125437961054379610GCexonicHOXC10synonymous DLBC|1|48|0.02083
-chr125437971554379715AGexonicHOXC10synonymous LUSC|1|178|0.00562
rs767108110chr125437949454379494GAexonicHOXC10nonsynonymous PCPG|1|184|0.00543
-chr125437916054379160CTexonicHOXC10synonymous SKCM|1|368|0.00272
rs780462718chr125437939854379398CTexonicHOXC10nonsynonymous STAD|1|395|0.00253,STES|1|395|0.00253
rs751259175chr125437938854379388CTexonicHOXC10synonymous PAAD|1|185|0.00541
-chr125437915954379159TCexonicHOXC10nonsynonymous LUAD|1|543|0.00184
-chr125438312154383121TGexonicHOXC10nonsynonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr125438322454383224CAexonicHOXC10nonsynonymous PAAD|1|185|0.00541
-chr125438295554382955GAexonicHOXC10nonsynonymous BRCA|1|982|0.00102
-chr125437961854379618TAexonicHOXC10nonsynonymous LIHC|1|373|0.00268
-chr125437905654379056CTexonicHOXC10nonsynonymous BLCA|1|396|0.00253
-chr125437964654379646CAexonicHOXC10synonymous LUAD|1|543|0.00184
-chr125437947654379476GAexonicHOXC10nonsynonymous UCEC|1|248|0.00403
-chr125437911054379110GAexonicHOXC10nonsynonymous SKCM|2|368|0.00543
-chr125437969754379697GTexonicHOXC10nonsynonymous CESC|1|194|0.00515
-chr125437962354379623GTexonicHOXC10nonsynonymous LUAD|1|543|0.00184
-chr125438330454383304T-UTR3HOXC10unknown STAD|1|395|0.00253,STES|1|395|0.00253
-chr125438300954383010AA-exonicHOXC10frameshift COAD|1|367|0.00272,COADREAD|1|489|0.00204
-chr125438314354383143CTexonicHOXC10synonymous UCEC|1|248|0.00403
-chr125437940254379402CTexonicHOXC10nonsynonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204,UCEC|1|248|0.00403
-chr125437909654379096CTexonicHOXC10nonsynonymous PRAD|1|499|0.00200
-chr125437935854379358CGexonicHOXC10synonymous BRCA|1|982|0.00102
-chr125437964454379644-CexonicHOXC10frameshift COAD|2|367|0.00545,COADREAD|2|489|0.00409
-chr125437917754379177GAexonicHOXC10nonsynonymous LUSC|1|178|0.00562,SKCM|2|368|0.00543
-chr125437916654379166CTexonicHOXC10synonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204
-chr125437968854379688GTexonicHOXC10nonsynonymous LUAD|1|543|0.00184
-chr125437921154379211GTexonicHOXC10nonsynonymous LUSC|1|178|0.00562
-chr125437970554379705CTexonicHOXC10nonsynonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204
-chr125437955354379553CTexonicHOXC10synonymous UCEC|1|248|0.00403
-chr125437977854379778GTexonicHOXC10synonymous LUAD|1|543|0.00184
rs535670613chr125437951154379511CTexonicHOXC10synonymous COAD|2|367|0.00545,COADREAD|2|489|0.00409
-chr125437959254379592CAexonicHOXC10synonymous LUAD|1|543|0.00184
-chr125438317154383171AGexonicHOXC10nonsynonymous LIHC|1|373|0.00268
-chr125438296154382961AGexonicHOXC10nonsynonymous LIHC|1|373|0.00268
-chr125438313254383132CAexonicHOXC10nonsynonymous BLCA|1|396|0.00253
rs771375837chr125437905554379055TAexonicHOXC10synonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204
-chr125437961954379619G-exonicHOXC10frameshift STAD|1|395|0.00253,STES|1|395|0.00253
-chr125437955754379557GAexonicHOXC10nonsynonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr125437943254379432CAexonicHOXC10nonsynonymous COADREAD|1|489|0.00204,READ|1|122|0.00820
rs766981575chr125437956154379561CTexonicHOXC10nonsynonymous SKCM|1|368|0.00272
-chr125437959154379591GAexonicHOXC10nonsynonymous HNSC|1|512|0.00195
-chr125438299054382990GAexonicHOXC10synonymous LIHC|1|373|0.00268
-chr125437926654379266CAexonicHOXC10nonsynonymous BLCA|1|396|0.00253

Disease information of HOXC10
TF_name Disease_name Disease_class Disease_semantic_type TF_disease_source

Pathway associated with HOXC10
pathway_ID pathway_name pathway_source gene_number edge_number

Go term information of HOXC10
GO_term_name GO_term_type TF_name
GO_SPINAL_CORD_MOTOR_NEURON_DIFFERENTIATION BP HOXC10
GO_VENTRAL_SPINAL_CORD_DEVELOPMENT BP HOXC10
GO_PROXIMAL_DISTAL_PATTERN_FORMATION BP HOXC10
GO_SPINAL_CORD_MOTOR_NEURON_CELL_FATE_SPECIFICATION BP HOXC10
GO_NEURON_FATE_SPECIFICATION BP HOXC10
GO_APPENDAGE_DEVELOPMENT BP HOXC10
GO_CENTRAL_NERVOUS_SYSTEM_NEURON_DIFFERENTIATION BP HOXC10
GO_NEURON_FATE_COMMITMENT BP HOXC10
GO_CELL_FATE_SPECIFICATION BP HOXC10
GO_REGIONALIZATION BP HOXC10
GO_TRANSFERASE_COMPLEX_TRANSFERRING_PHOSPHORUS_CONTAINING_GROUPS CC HOXC10
GO_NUCLEAR_CYCLIN_DEPENDENT_PROTEIN_KINASE_HOLOENZYME_COMPLEX CC HOXC10
GO_CARBOXY_TERMINAL_DOMAIN_PROTEIN_KINASE_COMPLEX CC HOXC10
GO_CYCLIN_DEPENDENT_PROTEIN_KINASE_HOLOENZYME_COMPLEX CC HOXC10

Survival analysis of HOXC10



Calculate the hazards ratio based on Cox PH Model.
Add the 95% CI as dotted line.

Expression of HOXC10