TF information

TF name: HOXA13
TF family: Homeobox
Ensembl gene ID: ENSG00000106031
Ensembl protein ID: ENSP00000222753
Entrez gene ID: 3209
Database name Link Database name Link
NCBI Gene: Genecards:
Uniprot: Wikipedia:
Cosmic 3D: Geneontology:
CCLE:

Frequency of HOXA13 in all biosamples
Sample ID Biosample type Tissue type Biosample name TF Frequency
Sample_02_114Cell lineMammary GlandCAL510.92964824120603
Sample_02_242Cell lineColonV4810.11757354354932
Sample_02_358Cell lineColonLS1800.098736176935229

HOXA13 distribution in samples’ most representative CRC
Sample ID Tissue type Biosample type Biosample name
Sample_02_114Mammary GlandCell lineCAL51

HOXA13 distribution in all CRCs
Biosample type
Biosample name
Sample ID

Genomic distribution of SEs associated with HOXA13
Download

Mutation of HOXA13
Database name Link
gnomAD: gnomAD
ExAC: ExAC
ICGC:
Database name Link
Cosmic:
Cosmic cell lines:
Depmap:

TCGA somatic mutations and clinical variants of HOXA13

rsID Chr Start Stop Ref Alt Gene_region Gene_symble Effect TCGA_Occurrence
-chr72723909627239096CAexonicHOXA13nonsynonymous LUAD|1|543|0.00184
-chr72723893627238936AGexonicHOXA13nonsynonymous GBM|1|290|0.00345,GBMLGG|1|820|0.00122
rs763227546chr72723902127239021TCexonicHOXA13nonsynonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204
rs770151068chr72723911627239116CGexonicHOXA13nonsynonymous BRCA|1|982|0.00102
-chr72723792127237921TGexonicHOXA13nonsynonymous BLCA|1|396|0.00253
-chr72723802927238029ATexonicHOXA13nonsynonymous LUAD|1|543|0.00184
rs146259736chr72723803127238031GCexonicHOXA13nonsynonymous BLCA|1|396|0.00253
-chr72723785327237853CAexonicHOXA13nonsynonymous UCEC|1|248|0.00403
-chr72723961527239615CAexonicHOXA13nonsynonymous STAD|1|395|0.00253,STES|1|395|0.00253
rs775132909chr72723782427237824GCexonicHOXA13nonsynonymous BRCA|1|982|0.00102
-chr72723889827238898CTexonicHOXA13nonsynonymous SKCM|1|368|0.00272,STAD|1|395|0.00253,STES|1|395|0.00253
-chr72723796927237969GAexonicHOXA13nonsynonymous LUAD|1|543|0.00184
-chr72723905527239055GTexonicHOXA13synonymous LUAD|1|543|0.00184
-chr72723877427238774CAsplicingHOXA13splicing LUAD|2|543|0.00368
-chr72723879427238794GTexonicHOXA13synonymous TGCT|1|155|0.00645
-chr72723881727238817CAexonicHOXA13stopgain LUAD|2|543|0.00368
-chr72723789327237893CAexonicHOXA13nonsynonymous HNSC|1|512|0.00195
-chr72723787127237871CTexonicHOXA13synonymous UCEC|1|248|0.00403
-chr72723896527238965C-exonicHOXA13frameshift LUAD|1|543|0.00184
-chr72723788827237888CTexonicHOXA13nonsynonymous UCEC|1|248|0.00403
-chr72723786427237864TCexonicHOXA13nonsynonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr72723803127238031GTexonicHOXA13nonsynonymous OV|1|469|0.00213
-chr72723785327237853CTexonicHOXA13synonymous BLCA|1|396|0.00253
-chr72723789627237896TAexonicHOXA13nonsynonymous BLCA|1|396|0.00253
-chr72723904427239044GAexonicHOXA13nonsynonymous PAAD|1|185|0.00541
-chr72723802727238027ACexonicHOXA13stopgain LUAD|1|543|0.00184
-chr72723923327239233GCexonicHOXA13nonsynonymous LIHC|1|373|0.00268
-chr72723896127238961TCexonicHOXA13nonsynonymous LIHC|1|373|0.00268
-chr72723791727237917GAexonicHOXA13nonsynonymous BLCA|1|396|0.00253
-chr72723797827237978CAexonicHOXA13stopgain COADREAD|1|489|0.00204,READ|1|122|0.00820,UCEC|1|248|0.00403
-chr72723883227238832TGexonicHOXA13nonsynonymous LUAD|1|543|0.00184
-chr72723784427237844GAexonicHOXA13synonymous UCS|1|57|0.01754
-chr72723806027238060GAexonicHOXA13synonymous UCEC|1|248|0.00403
-chr72723880927238809CGexonicHOXA13synonymous BRCA|1|982|0.00102
-chr72723892527238925GAexonicHOXA13nonsynonymous SKCM|2|368|0.00543
-chr72723903027239030ATexonicHOXA13nonsynonymous LUAD|1|543|0.00184
rs35608915chr72723798227237982TCexonicHOXA13synonymous THCA|1|504|0.00198
-chr72723795527237955CAexonicHOXA13synonymous LUAD|1|543|0.00184
-chr72723787827237878CAexonicHOXA13nonsynonymous LUSC|1|178|0.00562
-chr72723789727237897CTexonicHOXA13nonsynonymous BLCA|1|396|0.00253,HNSC|1|512|0.00195
rs372907690chr72723895327238953GAexonicHOXA13synonymous LUAD|1|543|0.00184
-chr72723795527237955CTexonicHOXA13synonymous UCEC|1|248|0.00403

Disease information of HOXA13
TF_name Disease_name Disease_class Disease_semantic_type TF_disease_source
HOXA13 Polydactyly C05;C16 Congenital Abnormality GENOMICS_ENGLAND
HOXA13 Female Urogenital Diseases C13 Disease or Syndrome CTD_human
HOXA13 Hand foot uterus syndrome C05;C12;C13;C16 Disease or Syndrome CTD_human;ORPHANET;UNIPROT
HOXA13 Preaxial deficiency, postaxial polydactyly and hypospadias C05;C12;C13;C16 Disease or Syndrome CTD_human;ORPHANET;UNIPROT
HOXA13 Intellectual Disability C10;C23;F01;F03 Mental or Behavioral Dysfunction GENOMICS_ENGLAND
HOXA13 Radial club hand Congenital Abnormality GENOMICS_ENGLAND

Pathway associated with HOXA13
pathway_ID pathway_name pathway_source gene_number edge_number

Go term information of HOXA13
GO_term_name GO_term_type TF_name

Survival analysis of HOXA13



Calculate the hazards ratio based on Cox PH Model.
Add the 95% CI as dotted line.

Expression of HOXA13