TF information

TF name: HOXC12
TF family: Homeobox
Ensembl gene ID: ENSG00000123407
Ensembl protein ID: ENSP00000243103
Entrez gene ID: 3228
Database name Link Database name Link
NCBI Gene: Genecards:
Uniprot: Wikipedia:
Cosmic 3D: Geneontology:
CCLE:

Frequency of HOXC12 in all biosamples
Sample ID Biosample type Tissue type Biosample name TF Frequency
Sample_02_069Cell lineBrainSF2680.61832061068702
Sample_02_114Cell lineMammary GlandCAL510.71356783919598

HOXC12 distribution in samples’ most representative CRC
Sample ID Tissue type Biosample type Biosample name
Sample_02_069BrainCell lineSF268

HOXC12 distribution in all CRCs
Biosample type
Biosample name
Sample ID

Genomic distribution of SEs associated with HOXC12
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Mutation of HOXC12
Database name Link
gnomAD: gnomAD
ExAC: ExAC
ICGC:
Database name Link
Cosmic:
Cosmic cell lines:
Depmap:

TCGA somatic mutations and clinical variants of HOXC12

rsID Chr Start Stop Ref Alt Gene_region Gene_symble Effect TCGA_Occurrence
rs146523432chr125435029554350295GAexonicHOXC12nonsynonymous UCEC|1|248|0.00403
-chr125434888954348889ACexonicHOXC12nonsynonymous SKCM|1|368|0.00272
rs754605519chr125435022954350229GAexonicHOXC12nonsynonymous PRAD|1|499|0.00200
-chr125435031354350313GCexonicHOXC12nonsynonymous CESC|1|194|0.00515,LUAD|1|543|0.00184
-chr125434883854348838TCexonicHOXC12nonsynonymous ESCA|1|185|0.00541
-chr125435031854350318CAexonicHOXC12nonsynonymous UCEC|1|248|0.00403
-chr125434897354348973GCexonicHOXC12nonsynonymous LUAD|1|543|0.00184
rs750686283chr125434895154348951GAexonicHOXC12nonsynonymous PAAD|1|185|0.00541
-chr125435029354350293CTexonicHOXC12synonymous ESCA|1|185|0.00541
rs745654830chr125434885254348852CTexonicHOXC12nonsynonymous STAD|1|395|0.00253,STES|1|395|0.00253
rs774788384chr125434898354348983CTexonicHOXC12synonymous STAD|2|395|0.00506,STES|2|395|0.00506
-chr125435016654350166CTexonicHOXC12nonsynonymous SKCM|1|368|0.00272
-chr125434879154348791CTexonicHOXC12synonymous SKCM|1|368|0.00272
rs751862154chr125435023254350232GAexonicHOXC12nonsynonymous LUAD|1|543|0.00184
-chr125435029854350298GAexonicHOXC12nonsynonymous LUAD|1|543|0.00184
-chr125434898054348980GAexonicHOXC12synonymous SKCM|1|368|0.00272
-chr125434890154348901GTexonicHOXC12nonsynonymous LUAD|1|543|0.00184
-chr125434879654348796AGexonicHOXC12nonsynonymous STAD|1|395|0.00253,STES|1|395|0.00253
rs373624523chr125435032754350327GAexonicHOXC12nonsynonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr125434876854348768CTexonicHOXC12nonsynonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204
rs775806170chr125435017154350171TCexonicHOXC12synonymous LIHC|1|373|0.00268
-chr125435016754350167GAexonicHOXC12synonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204,STAD|1|395|0.00253,STES|1|395|0.00253
-chr125435015354350153CTexonicHOXC12nonsynonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204
rs761620017chr125434888154348881GAexonicHOXC12synonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr125434885354348853GAexonicHOXC12nonsynonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204
rs761910644chr125434898454348984GAexonicHOXC12nonsynonymous CESC|1|194|0.00515
-chr125434891654348916AGexonicHOXC12nonsynonymous HNSC|1|512|0.00195
-chr125435030854350308GTexonicHOXC12nonsynonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204
-chr125434892054348920CTexonicHOXC12synonymous SKCM|1|368|0.00272
-chr125434903954349039GAexonicHOXC12nonsynonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr125435030554350305ACexonicHOXC12nonsynonymous UCEC|1|248|0.00403
rs754242675chr125434881454348814CTexonicHOXC12nonsynonymous LUAD|1|543|0.00184
-chr125434897854348978GAexonicHOXC12nonsynonymous BLCA|1|396|0.00253
rs763832631chr125434880654348806GTexonicHOXC12synonymous PAAD|1|185|0.00541,THCA|1|504|0.00198
-chr125435025554350255AGexonicHOXC12nonsynonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr125435015554350155CTexonicHOXC12synonymous LUSC|1|178|0.00562
-chr125434880854348808CAexonicHOXC12nonsynonymous LIHC|1|373|0.00268

Disease information of HOXC12
TF_name Disease_name Disease_class Disease_semantic_type TF_disease_source

Pathway associated with HOXC12
pathway_ID pathway_name pathway_source gene_number edge_number

Go term information of HOXC12
GO_term_name GO_term_type TF_name

Survival analysis of HOXC12



Calculate the hazards ratio based on Cox PH Model.
Add the 95% CI as dotted line.

Expression of HOXC12