Sample ID | Biosample type | Tissue type | Biosample name | TF Frequency |
---|---|---|---|---|
Sample_02_114 | Cell line | Mammary Gland | CAL51 | 0.4070351758794 |
Sample_02_296 | Cell line | Neuroblastoma | CLB-BER-Lud | 0.72685539403213 |
Sample_02_298 | Cell line | Neuroblastoma | CLB-GA | 0.53424657534247 |
Sample_02_299 | Cell line | Neuroblastoma | CLB-MA | 0.4220623501199 |
Sample_02_300 | Cell line | Neuroblastoma | CLB-PE | 0.33333333333333 |
Sample_02_311 | Cell line | Neuroblastoma | SK-N-AS | 0.50649350649351 |
Sample_02_314 | Cell line | Neuroblastoma | SK-N-FI | 0.57407407407407 |
Sample_02_316 | Cell line | Neuroblastoma | CHP212 | 0.58241758241758 |
Sample_02_318 | Cell line | Neuroblastoma | NB69 | 0.453125 |
Sample ID | Tissue type | Biosample type | Biosample name |
---|---|---|---|
Sample_02_296 | Neuroblastoma | Cell line | CLB-BER-Lud |
Sample_02_298 | Neuroblastoma | Cell line | CLB-GA |
Sample_02_311 | Neuroblastoma | Cell line | SK-N-AS |
Sample_02_314 | Neuroblastoma | Cell line | SK-N-FI |
Sample_02_316 | Neuroblastoma | Cell line | CHP212 |
Sample_02_318 | Neuroblastoma | Cell line | NB69 |
rsID | Chr | Start | Stop | Ref | Alt | Gene_region | Gene_symble | Effect | TCGA_Occurrence |
---|---|---|---|---|---|---|---|---|---|
- | chr2 | 176996147 | 176996147 | G | T | exonic | HOXD8 | nonsynonymous | UCEC|1|248|0.00403 |
- | chr2 | 176995548 | 176995548 | C | T | exonic | HOXD8 | stopgain | LUAD|1|543|0.00184 |
- | chr2 | 176995452 | 176995452 | C | G | exonic | HOXD8 | nonsynonymous | STAD|1|395|0.00253,STES|1|395|0.00253 |
rs774294577 | chr2 | 176995386 | 176995386 | G | T | exonic | HOXD8 | nonsynonymous | LUAD|1|543|0.00184 |
- | chr2 | 176996249 | 176996249 | T | G | exonic | HOXD8 | nonsynonymous | COAD|1|367|0.00272,COADREAD|1|489|0.00204 |
- | chr2 | 176996316 | 176996316 | C | T | exonic | HOXD8 | synonymous | LUAD|1|543|0.00184 |
- | chr2 | 176995521 | 176995521 | C | A | exonic | HOXD8 | nonsynonymous | LUAD|1|543|0.00184 |
- | chr2 | 176995644 | 176995644 | C | G | exonic | HOXD8 | nonsynonymous | BRCA|1|982|0.00102 |
rs867464783 | chr2 | 176996244 | 176996244 | C | A | exonic | HOXD8 | nonsynonymous | ACC|1|90|0.01111 |
- | chr2 | 176995502 | 176995502 | T | G | exonic | HOXD8 | nonsynonymous | COAD|1|367|0.00272,COADREAD|1|489|0.00204 |
- | chr2 | 176996323 | 176996323 | G | A | exonic | HOXD8 | nonsynonymous | HNSC|1|512|0.00195,SKCM|1|368|0.00272 |
- | chr2 | 176995396 | 176995396 | C | T | exonic | HOXD8 | nonsynonymous | SKCM|1|368|0.00272 |
- | chr2 | 176995630 | 176995630 | G | A | exonic | HOXD8 | nonsynonymous | UCEC|1|248|0.00403 |
- | chr2 | 176995628 | 176995628 | G | C | exonic | HOXD8 | nonsynonymous | LUAD|1|543|0.00184 |
- | chr2 | 176996301 | 176996301 | A | - | exonic | HOXD8 | frameshift | GBM|1|290|0.00345,GBMLGG|1|820|0.00122 |
- | chr2 | 176995417 | 176995417 | C | - | exonic | HOXD8 | frameshift | BRCA|1|982|0.00102,HNSC|1|512|0.00195,LUAD|1|543|0.00184,STAD|6|395|0.01519,STES|6|395|0.01519 |
- | chr2 | 176993750 | 176993750 | T | C | upstream | HOXD8 | unknown | CHOL|1|35|0.02857 |
- | chr2 | 176995668 | 176995668 | C | A | exonic | HOXD8 | nonsynonymous | PRAD|1|499|0.00200,STAD|1|395|0.00253,STES|1|395|0.00253 |
- | chr2 | 176995386 | 176995386 | G | A | exonic | HOXD8 | nonsynonymous | PAAD|1|185|0.00541 |
- | chr2 | 176996304 | 176996304 | G | T | exonic | HOXD8 | nonsynonymous | GBMLGG|1|820|0.00122,LGG|1|530|0.00189 |
- | chr2 | 176995617 | 176995617 | C | A | exonic | HOXD8 | nonsynonymous | LUAD|1|543|0.00184 |
- | chr2 | 176996094 | 176996094 | T | - | exonic | HOXD8 | frameshift | SKCM|1|368|0.00272 |
- | chr2 | 176996289 | 176996289 | A | C | exonic | HOXD8 | nonsynonymous | UCEC|1|248|0.00403 |
rs143950622 | chr2 | 176996243 | 176996243 | A | G | exonic | HOXD8 | nonsynonymous | COAD|1|367|0.00272,COADREAD|1|489|0.00204 |
- | chr2 | 176995424 | 176995424 | T | - | exonic | HOXD8 | frameshift | STAD|1|395|0.00253,STES|1|395|0.00253 |
- | chr2 | 176996151 | 176996151 | C | T | exonic | HOXD8 | synonymous | ESCA|1|185|0.00541 |
- | chr2 | 176995356 | 176995356 | G | A | exonic | HOXD8 | nonsynonymous | HNSC|1|512|0.00195 |
- | chr2 | 176995440 | 176995440 | C | A | exonic | HOXD8 | nonsynonymous | HNSC|1|512|0.00195 |
- | chr2 | 176996277 | 176996277 | C | T | exonic | HOXD8 | synonymous | BRCA|1|982|0.00102 |
- | chr2 | 176995511 | 176995511 | C | T | exonic | HOXD8 | synonymous | STAD|1|395|0.00253,STES|1|395|0.00253 |
- | chr2 | 176995302 | 176995302 | - | GCACC | exonic | HOXD8 | frameshift | SARC|1|247|0.00405 |
- | chr2 | 176996060 | 176996060 | G | A | exonic | HOXD8 | nonsynonymous | LUAD|1|543|0.00184 |
- | chr2 | 176995458 | 176995458 | C | - | exonic | HOXD8 | frameshift | COAD|1|367|0.00272,COADREAD|1|489|0.00204,ESCA|1|185|0.00541,STAD|4|395|0.01013,STES|4|395|0.01013 |
rs192755857 | chr2 | 176995146 | 176995146 | G | A | exonic | HOXD8 | nonsynonymous | DLBC|1|48|0.02083 |
- | chr2 | 176996059 | 176996059 | C | T | exonic | HOXD8 | stopgain | LUSC|1|178|0.00562 |
- | chr2 | 176995585 | 176995585 | C | T | exonic | HOXD8 | nonsynonymous | HNSC|2|512|0.00391 |
- | chr2 | 176995458 | 176995458 | C | T | exonic | HOXD8 | nonsynonymous | ESCA|1|185|0.00541 |
- | chr2 | 176995373 | 176995373 | C | T | exonic | HOXD8 | synonymous | BLCA|1|396|0.00253 |
rs763231409 | chr2 | 176995442 | 176995442 | G | T | exonic | HOXD8 | synonymous | COAD|1|367|0.00272,COADREAD|1|489|0.00204 |
rs770632206 | chr2 | 176995416 | 176995416 | - | C | exonic | HOXD8 | frameshift | LUAD|1|543|0.00184,STAD|3|395|0.00759,STES|3|395|0.00759 |
- | chr2 | 176996330 | 176996330 | T | G | exonic | HOXD8 | nonsynonymous | PRAD|1|499|0.00200 |
- | chr2 | 176996164 | 176996164 | - | CCTAGCCCT | exonic | HOXD8 | stopgain | KIPAN|1|799|0.00125,KIRP|1|282|0.00355 |
TF_name | Disease_name | Disease_class | Disease_semantic_type | TF_disease_source |
---|
pathway_ID | pathway_name | pathway_source | gene_number | edge_number |
---|
GO_term_name | GO_term_type | TF_name |
---|---|---|
GO_EMBRYONIC_AXIS_SPECIFICATION | BP | HOXD8 |
GO_EMBRYONIC_PATTERN_SPECIFICATION | BP | HOXD8 |
GO_SEGMENTATION | BP | HOXD8 |
GO_BLASTODERM_SEGMENTATION | BP | HOXD8 |
GO_TRIPARTITE_REGIONAL_SUBDIVISION | BP | HOXD8 |
GO_ANTERIOR_POSTERIOR_AXIS_SPECIFICATION | BP | HOXD8 |