TF information
| TF name: | HOXD9 |
| TF family: | Homeobox |
| Ensembl gene ID: | ENSG00000128709 |
| Ensembl protein ID: | ENSP00000249499 |
| Entrez gene ID: | 3235 |
| Database name | Link | Database name | Link |
| NCBI Gene: |  |
Genecards: |  |
| Uniprot: |  |
Wikipedia: |  |
| Cosmic 3D: |  |
Geneontology: |  |
| CCLE: |  |
Frequency of HOXD9 in all biosamples
| Sample ID | Biosample type | Tissue type | Biosample name | TF Frequency |
|---|---|---|---|---|
| Sample_02_114 | Cell line | Mammary Gland | CAL51 | 0.4070351758794 |
| Sample_02_298 | Cell line | Neuroblastoma | CLB-GA | 0.75342465753425 |
| Sample_02_299 | Cell line | Neuroblastoma | CLB-MA | 0.016786570743405 |
| Sample_02_300 | Cell line | Neuroblastoma | CLB-PE | 0.64102564102564 |
| Sample_02_311 | Cell line | Neuroblastoma | SK-N-AS | 0.77922077922078 |
| Sample_02_316 | Cell line | Neuroblastoma | CHP212 | 0.85164835164835 |
| Sample_02_318 | Cell line | Neuroblastoma | NB69 | 0.9453125 |
HOXD9 distribution in samples’ most representative CRC
| Sample ID | Tissue type | Biosample type | Biosample name |
|---|---|---|---|
| Sample_02_298 | Neuroblastoma | Cell line | CLB-GA |
| Sample_02_300 | Neuroblastoma | Cell line | CLB-PE |
| Sample_02_311 | Neuroblastoma | Cell line | SK-N-AS |
| Sample_02_316 | Neuroblastoma | Cell line | CHP212 |
| Sample_02_318 | Neuroblastoma | Cell line | NB69 |
HOXD9 distribution in all CRCs
Genomic distribution of SEs associated with HOXD9
Genomic distribution of SEs associated with TF
Figure legend:
Genomic distribution of SEs associated with TF: It can roughly understand the genomic regions of SEs associated with TF, and help to carry out the next analysis, such as knocking down the experiment.
What is important information?
The yellow box can be thought of as the common genomic regions that regulates the SEs associated with TF. For example, if a knockdown experiment is performed on this region, then theoretically, the expression of the TF will be greatly reduced.
| Database name | Link |
|---|---|
| Cosmic: |  |
| Cosmic cell lines: |  |
| Depmap: |  |
TCGA somatic mutations and clinical variants of HOXD9
| rsID | Chr | Start | Stop | Ref | Alt | Gene_region | Gene_symble | Effect | TCGA_Occurrence |
|---|---|---|---|---|---|---|---|---|---|
| - | chr2 | 176988888 | 176988888 | C | T | exonic | HOXD9 | synonymous | UCEC|1|248|0.00403 |
| - | chr2 | 176988685 | 176988685 | C | T | exonic | HOXD9 | nonsynonymous | BLCA|1|396|0.00253 |
| - | chr2 | 176988684 | 176988684 | C | T | exonic | HOXD9 | synonymous | UCEC|1|248|0.00403 |
| - | chr2 | 176988882 | 176988882 | G | T | exonic | HOXD9 | nonsynonymous | COADREAD|1|489|0.00204,READ|1|122|0.00820 |
| - | chr2 | 176987530 | 176987530 | T | A | exonic | HOXD9 | nonsynonymous | STAD|1|395|0.00253,STES|1|395|0.00253 |
| - | chr2 | 176988850 | 176988850 | C | A | exonic | HOXD9 | nonsynonymous | GBM|1|290|0.00345,GBMLGG|1|820|0.00122 |
| - | chr2 | 176987685 | 176987685 | C | T | exonic | HOXD9 | synonymous | STAD|1|395|0.00253,STES|1|395|0.00253 |
| - | chr2 | 176987785 | 176987785 | C | A | exonic | HOXD9 | nonsynonymous | LUAD|1|543|0.00184 |
| - | chr2 | 176987600 | 176987600 | C | T | exonic | HOXD9 | nonsynonymous | COAD|1|367|0.00272,COADREAD|1|489|0.00204 |
| - | chr2 | 176987568 | 176987568 | G | A | exonic | HOXD9 | synonymous | PAAD|1|185|0.00541 |
| - | chr2 | 176988747 | 176988747 | G | T | exonic | HOXD9 | nonsynonymous | COADREAD|1|489|0.00204,READ|1|122|0.00820 |
| rs35649704 | chr2 | 176988765 | 176988765 | C | T | exonic | HOXD9 | synonymous | DLBC|1|48|0.02083 |
| - | chr2 | 176987716 | 176987716 | G | A | exonic | HOXD9 | nonsynonymous | SKCM|1|368|0.00272 |
| - | chr2 | 176988776 | 176988776 | C | T | exonic | HOXD9 | nonsynonymous | HNSC|1|512|0.00195 |
| rs778452592 | chr2 | 176988257 | 176988257 | C | T | exonic | HOXD9 | nonsynonymous | SKCM|2|368|0.00543 |
| rs758440041 | chr2 | 176988158 | 176988158 | - | G | exonic | HOXD9 | frameshift | COAD|1|367|0.00272,COADREAD|2|489|0.00409,READ|1|122|0.00820 |
| - | chr2 | 176987556 | 176987556 | C | A | exonic | HOXD9 | stopgain | PRAD|1|499|0.00200 |
| rs200391181 | chr2 | 176988303 | 176988303 | A | G | exonic | HOXD9 | synonymous | STAD|1|395|0.00253,STES|1|395|0.00253 |
| - | chr2 | 176988751 | 176988751 | G | C | exonic | HOXD9 | nonsynonymous | CESC|1|194|0.00515 |
| - | chr2 | 176987764 | 176987764 | G | T | exonic | HOXD9 | nonsynonymous | STAD|1|395|0.00253,STES|1|395|0.00253 |
| rs751672056 | chr2 | 176988212 | 176988212 | C | T | exonic | HOXD9 | nonsynonymous | TGCT|1|155|0.00645 |
| - | chr2 | 176988234 | 176988234 | C | A | exonic | HOXD9 | nonsynonymous | LUAD|1|543|0.00184 |
| - | chr2 | 176988295 | 176988295 | C | T | exonic | HOXD9 | stopgain | COADREAD|1|489|0.00204,READ|1|122|0.00820 |
| - | chr2 | 176988678 | 176988678 | C | A | exonic | HOXD9 | nonsynonymous | LUAD|1|543|0.00184 |
| rs200417886 | chr2 | 176988290 | 176988290 | C | A | exonic | HOXD9 | nonsynonymous | CHOL|1|35|0.02857 |
| - | chr2 | 176987697 | 176987697 | T | - | exonic | HOXD9 | frameshift | STAD|1|395|0.00253,STES|1|395|0.00253 |
| - | chr2 | 176987564 | 176987564 | A | G | exonic | HOXD9 | nonsynonymous | STAD|1|395|0.00253,STES|1|395|0.00253 |
| - | chr2 | 176988179 | 176988179 | C | T | exonic | HOXD9 | nonsynonymous | STAD|1|395|0.00253,STES|1|395|0.00253 |
| - | chr2 | 176987592 | 176987592 | G | C | exonic | HOXD9 | nonsynonymous | LUSC|1|178|0.00562 |
| - | chr2 | 176988200 | 176988200 | G | T | exonic | HOXD9 | nonsynonymous | HNSC|1|512|0.00195 |
| - | chr2 | 176988855 | 176988855 | G | T | exonic | HOXD9 | nonsynonymous | CHOL|1|35|0.02857 |
| - | chr2 | 176988775 | 176988775 | A | G | exonic | HOXD9 | nonsynonymous | SKCM|1|368|0.00272 |
| - | chr2 | 176987559 | 176987559 | C | T | exonic | HOXD9 | synonymous | STAD|1|395|0.00253,STES|1|395|0.00253 |
| - | chr2 | 176987826 | 176987826 | C | T | exonic | HOXD9 | synonymous | UCS|1|57|0.01754 |
| - | chr2 | 176987711 | 176987711 | C | G | exonic | HOXD9 | nonsynonymous | LUSC|1|178|0.00562 |
| rs377282327 | chr2 | 176988216 | 176988216 | G | A | exonic | HOXD9 | synonymous | LUAD|1|543|0.00184 |
| - | chr2 | 176988265 | 176988265 | G | C | exonic | HOXD9 | nonsynonymous | LIHC|1|373|0.00268 |
| - | chr2 | 176988789 | 176988789 | C | T | exonic | HOXD9 | synonymous | LUAD|1|543|0.00184 |
| - | chr2 | 176988304 | 176988304 | C | A | exonic | HOXD9 | nonsynonymous | UCEC|1|248|0.00403 |
| - | chr2 | 176987735 | 176987735 | C | A | exonic | HOXD9 | nonsynonymous | LUAD|1|543|0.00184 |
| - | chr2 | 176988902 | 176988902 | G | T | exonic | HOXD9 | stoploss | LUAD|1|543|0.00184 |
| - | chr2 | 176988709 | 176988709 | C | T | exonic | HOXD9 | nonsynonymous | UCEC|1|248|0.00403 |
| TF_name | Disease_name | Disease_class | Disease_semantic_type | TF_disease_source |
|---|---|---|---|---|
| HOXD9 | Mucinous Adenocarcinoma | C04 | Neoplastic Process | CTD_human |
| HOXD9 | Colorectal Carcinoma | C04;C06 | Neoplastic Process | CTD_human |
| HOXD9 | Colorectal Neoplasms | C04;C06 | Neoplastic Process | CTD_human |
| HOXD9 | Neoplastic Processes | C04;C23 | Neoplastic Process | CTD_human |
| HOXD9 | ovarian neoplasm | C04;C13;C19 | Neoplastic Process | CTD_human |
| HOXD9 | Malignant neoplasm of ovary | C04;C13;C19 | Neoplastic Process | CTD_human |
| HOXD9 | Colorectal Cancer | C04;C06 | Neoplastic Process | CTD_human |
| pathway_ID | pathway_name | pathway_source | gene_number | edge_number |
|---|
| GO_term_name | GO_term_type | TF_name |
|---|---|---|
| GO_MUSCLE_TISSUE_DEVELOPMENT | BP | HOXD9 |
| GO_SINGLE_ORGANISM_BEHAVIOR | BP | HOXD9 |
| GO_HINDLIMB_MORPHOGENESIS | BP | HOXD9 |
| GO_EMBRYONIC_SKELETAL_SYSTEM_MORPHOGENESIS | BP | HOXD9 |
| GO_FORELIMB_MORPHOGENESIS | BP | HOXD9 |
| GO_PROXIMAL_DISTAL_PATTERN_FORMATION | BP | HOXD9 |
| GO_EMBRYONIC_FORELIMB_MORPHOGENESIS | BP | HOXD9 |
| GO_PERIPHERAL_NERVOUS_SYSTEM_NEURON_DIFFERENTIATION | BP | HOXD9 |
| GO_PERIPHERAL_NERVOUS_SYSTEM_DEVELOPMENT | BP | HOXD9 |