Sample ID | Biosample type | Tissue type | Biosample name | TF Frequency |
---|---|---|---|---|
Sample_02_007 | Other | Cervical | cervical-cancer_vector | 0.28145695364238 |
Sample_02_069 | Cell line | Brain | SF268 | 0.74809160305344 |
Sample_02_114 | Cell line | Mammary Gland | CAL51 | 0.64824120603015 |
Sample ID | Tissue type | Biosample type | Biosample name |
---|---|---|---|
Sample_02_069 | Brain | Cell line | SF268 |
rsID | Chr | Start | Stop | Ref | Alt | Gene_region | Gene_symble | Effect | TCGA_Occurrence |
---|---|---|---|---|---|---|---|---|---|
- | chr12 | 54333276 | 54333276 | G | A | exonic | HOXC13 | nonsynonymous | STAD|1|395|0.00253,STES|1|395|0.00253 |
- | chr12 | 54333266 | 54333266 | G | A | exonic | HOXC13 | synonymous | STAD|1|395|0.00253,STES|1|395|0.00253 |
- | chr12 | 54338837 | 54338837 | C | T | exonic | HOXC13 | nonsynonymous | COAD|1|367|0.00272,COADREAD|1|489|0.00204,STAD|1|395|0.00253,STES|1|395|0.00253 |
- | chr12 | 54333305 | 54333305 | C | G | exonic | HOXC13 | nonsynonymous | BLCA|1|396|0.00253 |
- | chr12 | 54333242 | 54333242 | G | A | exonic | HOXC13 | synonymous | CESC|1|194|0.00515 |
- | chr12 | 54338960 | 54338960 | A | G | exonic | HOXC13 | nonsynonymous | SKCM|1|368|0.00272 |
- | chr12 | 54338903 | 54338903 | A | T | exonic | HOXC13 | nonsynonymous | LUAD|1|543|0.00184 |
rs747385249 | chr12 | 54338951 | 54338951 | C | T | exonic | HOXC13 | nonsynonymous | STAD|1|395|0.00253,STES|1|395|0.00253 |
- | chr12 | 54332733 | 54332733 | - | TA | exonic | HOXC13 | frameshift | UCEC|1|248|0.00403 |
- | chr12 | 54333267 | 54333267 | G | T | exonic | HOXC13 | nonsynonymous | LUAD|1|543|0.00184 |
- | chr12 | 54338815 | 54338815 | C | A | exonic | HOXC13 | nonsynonymous | LUAD|1|543|0.00184 |
- | chr12 | 54339026 | 54339026 | C | T | exonic | HOXC13 | nonsynonymous | DLBC|1|48|0.02083 |
- | chr12 | 54338804 | 54338804 | G | A | exonic | HOXC13 | nonsynonymous | HNSC|1|512|0.00195 |
- | chr12 | 54333195 | 54333195 | G | A | exonic | HOXC13 | nonsynonymous | SKCM|1|368|0.00272 |
- | chr12 | 54332758 | 54332758 | C | T | exonic | HOXC13 | nonsynonymous | GBM|1|290|0.00345,GBMLGG|1|820|0.00122 |
rs755605936 | chr12 | 54338833 | 54338833 | G | A | exonic | HOXC13 | synonymous | GBMLGG|1|820|0.00122,LGG|1|530|0.00189 |
- | chr12 | 54338879 | 54338879 | G | A | exonic | HOXC13 | nonsynonymous | SKCM|1|368|0.00272 |
- | chr12 | 54338822 | 54338822 | C | A | exonic | HOXC13 | nonsynonymous | OV|1|469|0.00213 |
rs746424242 | chr12 | 54338978 | 54338978 | C | T | exonic | HOXC13 | nonsynonymous | STAD|1|395|0.00253,STES|1|395|0.00253 |
- | chr12 | 54338891 | 54338891 | A | C | exonic | HOXC13 | nonsynonymous | COAD|1|367|0.00272,COADREAD|1|489|0.00204 |
- | chr12 | 54338891 | 54338891 | A | G | exonic | HOXC13 | nonsynonymous | LUAD|4|543|0.00737 |
- | chr12 | 54338828 | 54338828 | C | T | exonic | HOXC13 | nonsynonymous | HNSC|1|512|0.00195 |
rs778942107 | chr12 | 54333278 | 54333278 | G | A | exonic | HOXC13 | synonymous | BLCA|1|396|0.00253 |
- | chr12 | 54338925 | 54338925 | T | C | exonic | HOXC13 | nonsynonymous | LIHC|1|373|0.00268 |
rs201149022 | chr12 | 54339018 | 54339018 | C | T | exonic | HOXC13 | nonsynonymous | COADREAD|1|489|0.00204,READ|1|122|0.00820,UCEC|1|248|0.00403 |
- | chr12 | 54333359 | 54333359 | G | C | exonic | HOXC13 | nonsynonymous | UCS|1|57|0.01754 |
- | chr12 | 54338957 | 54338957 | G | T | exonic | HOXC13 | nonsynonymous | COAD|1|367|0.00272,COADREAD|1|489|0.00204 |
- | chr12 | 54338930 | 54338930 | G | A | exonic | HOXC13 | nonsynonymous | BLCA|1|396|0.00253 |
rs761646324 | chr12 | 54338919 | 54338919 | G | A | exonic | HOXC13 | nonsynonymous | BLCA|1|396|0.00253 |
- | chr12 | 54338863 | 54338863 | G | A | exonic | HOXC13 | synonymous | BLCA|2|396|0.00505 |
- | chr12 | 54338956 | 54338956 | G | C | exonic | HOXC13 | nonsynonymous | HNSC|1|512|0.00195 |
- | chr12 | 54333153 | 54333153 | G | A | exonic | HOXC13 | nonsynonymous | LUAD|1|543|0.00184 |
- | chr12 | 54333126 | 54333126 | G | A | exonic | HOXC13 | nonsynonymous | KICH|1|66|0.01515,KIPAN|1|799|0.00125 |
- | chr12 | 54333307 | 54333307 | A | G | exonic | HOXC13 | nonsynonymous | DLBC|1|48|0.02083 |
rs764018957 | chr12 | 54338822 | 54338822 | C | T | exonic | HOXC13 | nonsynonymous | UCEC|1|248|0.00403 |
- | chr12 | 54338921 | 54338921 | C | G | exonic | HOXC13 | nonsynonymous | LUAD|1|543|0.00184 |
- | chr12 | 54338823 | 54338823 | G | A | exonic | HOXC13 | nonsynonymous | ESCA|1|185|0.00541 |
rs757223922 | chr12 | 54333154 | 54333154 | A | G | exonic | HOXC13 | nonsynonymous | LUAD|1|543|0.00184 |
rs762288044 | chr12 | 54333329 | 54333329 | C | T | exonic | HOXC13 | synonymous | LUAD|1|543|0.00184 |
- | chr12 | 54333415 | 54333415 | C | A | exonic | HOXC13 | nonsynonymous | BRCA|2|982|0.00204 |
- | chr12 | 54333171 | 54333171 | C | T | exonic | HOXC13 | nonsynonymous | PAAD|1|185|0.00541 |
- | chr12 | 54339019 | 54339019 | G | A | exonic | HOXC13 | synonymous | COAD|1|367|0.00272,COADREAD|1|489|0.00204 |
- | chr12 | 54339012 | 54339012 | C | T | exonic | HOXC13 | nonsynonymous | BLCA|1|396|0.00253 |
- | chr12 | 54338866 | 54338866 | G | T | exonic | HOXC13 | nonsynonymous | GBMLGG|1|820|0.00122,LGG|1|530|0.00189 |
- | chr12 | 54338839 | 54338839 | C | T | exonic | HOXC13 | synonymous | STAD|1|395|0.00253,STES|1|395|0.00253 |
- | chr12 | 54333053 | 54333053 | C | T | exonic | HOXC13 | synonymous | TGCT|1|155|0.00645 |
- | chr12 | 54333237 | 54333237 | C | T | exonic | HOXC13 | stopgain | SARC|1|247|0.00405 |
- | chr12 | 54332775 | 54332775 | G | A | exonic | HOXC13 | nonsynonymous | HNSC|1|512|0.00195 |
- | chr12 | 54333057 | 54333057 | - | A | exonic | HOXC13 | stopgain | LUAD|1|543|0.00184 |
- | chr12 | 54333151 | 54333151 | C | T | exonic | HOXC13 | nonsynonymous | CESC|1|194|0.00515 |
- | chr12 | 54338877 | 54338877 | A | C | exonic | HOXC13 | nonsynonymous | COAD|1|367|0.00272,COADREAD|1|489|0.00204 |
TF_name | Disease_name | Disease_class | Disease_semantic_type | TF_disease_source |
---|---|---|---|---|
HOXC13 | Ectodermal Dysplasia, Pure Hair-Nail Type | C16;C17 | Disease or Syndrome | CTD_human;ORPHANET |
HOXC13 | ECTODERMAL DYSPLASIA 9, HAIR/NAIL TYPE | Disease or Syndrome | CTD_human;UNIPROT | |
HOXC13 | Intellectual Disability | C10;C23;F01;F03 | Mental or Behavioral Dysfunction | GENOMICS_ENGLAND |
pathway_ID | pathway_name | pathway_source | gene_number | edge_number |
---|
GO_term_name | GO_term_type | TF_name |
---|---|---|
GO_TONGUE_DEVELOPMENT | BP | HOXC13 |
GO_SKIN_EPIDERMIS_DEVELOPMENT | BP | HOXC13 |
GO_TRANSCRIPTION_FACTOR_ACTIVITY_RNA_POLYMERASE_II_CORE_PROMOTER_PROXIMAL_REGION_SEQUENCE_SPECIFIC_BINDING | MF | HOXC13 |
GO_CHROMATIN_BINDING | MF | HOXC13 |