TF information

TF name: HOXC9
TF family: Homeobox
Ensembl gene ID: ENSG00000180806
Ensembl protein ID: ENSP00000423861, ENSP00000302836
Entrez gene ID: 3225
Database name Link Database name Link
NCBI Gene: Genecards:
Uniprot: Wikipedia:
Cosmic 3D: Geneontology:
CCLE:

Frequency of HOXC9 in all biosamples
Sample ID Biosample type Tissue type Biosample name TF Frequency
Sample_01_001Cell lineProstate22Rv10.15254237288136
Sample_02_069Cell lineBrainSF2680.41221374045802
Sample_02_079Cell lineMammary GlandT-47D_10.44444444444444
Sample_02_114Cell lineMammary GlandCAL510.35175879396985
Sample_02_250TissueBraintumormodel36910.25
Sample_02_296Cell lineNeuroblastomaCLB-BER-Lud0.46595256312165
Sample_02_312Cell lineNeuroblastomaSK-N-BE_2-C1
Sample_02_394Cell lineMammary GlandT-47D_20.30769230769231
Sample_02_395Cell lineMammary GlandBT-5490.28447552447552
Sample_02_403Cell lineMammary GlandT-47D_untreat0.45454545454545
Sample_02_404Cell lineMammary GlandZR-75-1_20.25179856115108

HOXC9 distribution in samples’ most representative CRC
Sample ID Tissue type Biosample type Biosample name
Sample_02_069BrainCell lineSF268
Sample_02_296NeuroblastomaCell lineCLB-BER-Lud
Sample_02_312NeuroblastomaCell lineSK-N-BE_2-C
Sample_02_403Mammary GlandCell lineT-47D_untreat

HOXC9 distribution in all CRCs
Biosample type
Biosample name
Sample ID

Genomic distribution of SEs associated with HOXC9
Download

Mutation of HOXC9
Database name Link
gnomAD: gnomAD
ExAC: ExAC
ICGC:
Database name Link
Cosmic:
Cosmic cell lines:
Depmap:

TCGA somatic mutations and clinical variants of HOXC9

rsID Chr Start Stop Ref Alt Gene_region Gene_symble Effect TCGA_Occurrence
-chr125439437254394372GAexonicHOXC9nonsynonymous BLCA|1|396|0.00253
rs34136736chr125439419454394194CTexonicHOXC9synonymous COADREAD|1|489|0.00204,READ|1|122|0.00820
-chr125439630354396303GAexonicHOXC9nonsynonymous LUAD|1|543|0.00184
rs11829948chr125439433754394337CTexonicHOXC9nonsynonymous ACC|1|90|0.01111
-chr125439629954396299GAexonicHOXC9synonymous CESC|1|194|0.00515,LUSC|1|178|0.00562
-chr125439622054396220CTexonicHOXC9nonsynonymous GBM|1|290|0.00345,GBMLGG|1|820|0.00122
-chr125439407454394074TCexonicHOXC9synonymous HNSC|1|512|0.00195
-chr125439412454394124CTexonicHOXC9nonsynonymous UCEC|1|248|0.00403
-chr125439629754396297GAexonicHOXC9nonsynonymous HNSC|1|512|0.00195
-chr125439417254394172CTexonicHOXC9nonsynonymous ESCA|1|185|0.00541
-chr125439413754394137CTexonicHOXC9synonymous BRCA|1|982|0.00102,LUAD|1|543|0.00184
-chr125439644054396440CTexonicHOXC9synonymous SKCM|1|368|0.00272,STAD|1|395|0.00253,STES|1|395|0.00253
-chr125439428554394285TAexonicHOXC9nonsynonymous BLCA|1|396|0.00253
-chr125439637554396375CTexonicHOXC9nonsynonymous BLCA|1|396|0.00253,COAD|1|367|0.00272,COADREAD|1|489|0.00204
-chr125439403954394039CAexonicHOXC9nonsynonymous UCEC|1|248|0.00403
-chr125439417154394171GAexonicHOXC9nonsynonymous LUAD|1|543|0.00184
rs767515230chr125439622254396222GAexonicHOXC9nonsynonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr125439413954394139CTexonicHOXC9nonsynonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr125439637254396372GTexonicHOXC9stopgain ESCA|1|185|0.00541
-chr125439638654396386AGexonicHOXC9synonymous HNSC|1|512|0.00195
-chr125439423454394234GAexonicHOXC9nonsynonymous BLCA|1|396|0.00253
rs776032805chr125439640254396402CTexonicHOXC9stopgain COAD|1|367|0.00272,COADREAD|1|489|0.00204
-chr125439640254396402CGexonicHOXC9nonsynonymous BRCA|1|982|0.00102
-chr125439424354394243CTexonicHOXC9nonsynonymous LUAD|1|543|0.00184
rs764826136chr125439631154396311CTexonicHOXC9synonymous HNSC|1|512|0.00195
rs2241820chr125439449754394497CTexonicHOXC9synonymous KICH|1|66|0.01515,KIPAN|1|799|0.00125
-chr125439624054396240GAexonicHOXC9nonsynonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr125439424754394247ATexonicHOXC9nonsynonymous LUAD|1|543|0.00184
-chr125439624854396248CAexonicHOXC9synonymous HNSC|2|512|0.00391
-chr125439404454394044AGexonicHOXC9synonymous LIHC|1|373|0.00268
rs749476187chr125439626154396261CTexonicHOXC9nonsynonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204
-chr125439404154394041CTexonicHOXC9synonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr125439634754396347GAexonicHOXC9synonymous SKCM|1|368|0.00272
-chr125439414254394142CTexonicHOXC9nonsynonymous PAAD|1|185|0.00541
rs34079606chr125439428454394284CTexonicHOXC9synonymous ACC|1|90|0.01111
-chr125439444654394446-TexonicHOXC9frameshift SKCM|1|368|0.00272
-chr125439419154394191GAexonicHOXC9synonymous HNSC|1|512|0.00195
-chr125439450354394503GAexonicHOXC9synonymous ESCA|1|185|0.00541
-chr125439636254396362CGexonicHOXC9synonymous LUAD|1|543|0.00184
-chr125439400954394009GAexonicHOXC9nonsynonymous BLCA|1|396|0.00253
-chr125439641654396416GAexonicHOXC9nonsynonymous SKCM|1|368|0.00272
rs754597030chr125439628654396286CTexonicHOXC9nonsynonymous LUSC|1|178|0.00562
-chr125439621554396215CTexonicHOXC9synonymous GBMLGG|1|820|0.00122,LGG|1|530|0.00189

Disease information of HOXC9
TF_name Disease_name Disease_class Disease_semantic_type TF_disease_source
HOXC9 Colorectal Cancer C04;C06 Neoplastic Process UNIPROT

Pathway associated with HOXC9
pathway_ID pathway_name pathway_source gene_number edge_number

Go term information of HOXC9
GO_term_name GO_term_type TF_name
GO_EMBRYONIC_SKELETAL_SYSTEM_DEVELOPMENT BP HOXC9
GO_SKELETAL_SYSTEM_DEVELOPMENT BP HOXC9
GO_ANTERIOR_POSTERIOR_PATTERN_SPECIFICATION BP HOXC9
GO_SKELETAL_SYSTEM_MORPHOGENESIS BP HOXC9

Survival analysis of HOXC9



Calculate the hazards ratio based on Cox PH Model.
Add the 95% CI as dotted line.

Expression of HOXC9