Sample ID | Biosample type | Tissue type | Biosample name | TF Frequency |
---|---|---|---|---|
Sample_01_001 | Cell line | Prostate | 22Rv1 | 0.12106537530266 |
Sample_02_079 | Cell line | Mammary Gland | T-47D_1 | 0.44444444444444 |
Sample_02_114 | Cell line | Mammary Gland | CAL51 | 0.36683417085427 |
Sample_02_166 | Cell line | Mammary Gland | HCC1954_Parental | 0.152 |
Sample_02_250 | Tissue | Brain | tumormodel3691 | 0.09375 |
Sample_02_267 | Cell line | Kidney | 786-O | 0.2 |
Sample_02_268 | Cell line | Kidney | A-498 | 0.014399113900683 |
Sample_02_316 | Cell line | Neuroblastoma | CHP212 | 0.087912087912088 |
Sample_02_394 | Cell line | Mammary Gland | T-47D_2 | 0.30769230769231 |
Sample_02_395 | Cell line | Mammary Gland | BT-549 | 0.067132867132867 |
Sample_02_403 | Cell line | Mammary Gland | T-47D_untreat | 0.29545454545455 |
Sample_02_406 | Cell line | Mammary Gland | ZR-75-30_parental | 0.08695652173913 |
Sample_02_430 | Cell line | Kidney | 12364284 | 0.125 |
Sample ID | Tissue type | Biosample type | Biosample name |
---|---|---|---|
Sample_02_079 | Mammary Gland | Cell line | T-47D_1 |
rsID | Chr | Start | Stop | Ref | Alt | Gene_region | Gene_symble | Effect | TCGA_Occurrence |
---|---|---|---|---|---|---|---|---|---|
rs764013512 | chr17 | 46622002 | 46622002 | G | - | exonic | HOXB2 | frameshift | COAD|1|367|0.00272,COADREAD|1|489|0.00204,STAD|1|395|0.00253,STES|1|395|0.00253 |
- | chr17 | 46620496 | 46620496 | A | G | exonic | HOXB2 | synonymous | GBMLGG|1|820|0.00122,LGG|1|530|0.00189,LUAD|3|543|0.00552,PAAD|1|185|0.00541,PRAD|2|499|0.00401,UVM|1|80|0.01250 |
rs374804676 | chr17 | 46620486 | 46620486 | C | T | exonic | HOXB2 | nonsynonymous | SKCM|2|368|0.00543 |
- | chr17 | 46620492 | 46620492 | A | - | exonic | HOXB2 | frameshift | PAAD|2|185|0.01081 |
- | chr17 | 46621062 | 46621062 | G | A | exonic | HOXB2 | nonsynonymous | STAD|1|395|0.00253,STES|1|395|0.00253 |
rs780127325 | chr17 | 46622181 | 46622181 | T | C | exonic | HOXB2 | synonymous | COAD|1|367|0.00272,COADREAD|1|489|0.00204 |
- | chr17 | 46621972 | 46621972 | T | C | exonic | HOXB2 | nonsynonymous | SKCM|1|368|0.00272 |
- | chr17 | 46622097 | 46622097 | G | A | exonic | HOXB2 | synonymous | HNSC|1|512|0.00195 |
- | chr17 | 46621910 | 46621910 | G | A | exonic | HOXB2 | nonsynonymous | HNSC|1|512|0.00195 |
- | chr17 | 46622221 | 46622221 | A | G | exonic | HOXB2 | nonsynonymous | COAD|1|367|0.00272,COADREAD|1|489|0.00204 |
- | chr17 | 46620533 | 46620533 | G | T | exonic | HOXB2 | nonsynonymous | SKCM|1|368|0.00272 |
- | chr17 | 46621989 | 46621989 | G | A | exonic | HOXB2 | synonymous | SKCM|1|368|0.00272 |
- | chr17 | 46621020 | 46621020 | C | T | exonic | HOXB2 | nonsynonymous | BLCA|1|396|0.00253 |
- | chr17 | 46622246 | 46622246 | - | A | exonic | HOXB2 | frameshift | BRCA|1|982|0.00102 |
- | chr17 | 46620574 | 46620574 | G | T | exonic | HOXB2 | nonsynonymous | STAD|1|395|0.00253,STES|1|395|0.00253 |
- | chr17 | 46622203 | 46622203 | G | T | exonic | HOXB2 | nonsynonymous | LUAD|1|543|0.00184 |
rs765776487 | chr17 | 46620969 | 46620969 | C | T | exonic | HOXB2 | nonsynonymous | STAD|1|395|0.00253,STES|1|395|0.00253 |
- | chr17 | 46621976 | 46621976 | C | A | exonic | HOXB2 | stopgain | ESCA|1|185|0.00541 |
- | chr17 | 46622258 | 46622258 | C | A | exonic | HOXB2 | stopgain | CESC|1|194|0.00515 |
- | chr17 | 46620947 | 46620947 | C | A | exonic | HOXB2 | nonsynonymous | SKCM|1|368|0.00272 |
- | chr17 | 46622226 | 46622226 | C | A | exonic | HOXB2 | synonymous | LUSC|1|178|0.00562 |
- | chr17 | 46620658 | 46620658 | C | T | exonic | HOXB2 | synonymous | HNSC|2|512|0.00391 |
- | chr17 | 46620515 | 46620515 | G | C | exonic | HOXB2 | nonsynonymous | STAD|1|395|0.00253,STES|1|395|0.00253 |
- | chr17 | 46620387 | 46620387 | C | A | UTR3 | HOXB2 | unknown | CESC|1|194|0.00515 |
rs758702144 | chr17 | 46620878 | 46620878 | G | A | exonic | HOXB2 | nonsynonymous | COAD|1|367|0.00272,COADREAD|1|489|0.00204 |
- | chr17 | 46622272 | 46622272 | A | G | exonic | HOXB2 | nonsynonymous | LIHC|1|373|0.00268 |
- | chr17 | 46620596 | 46620596 | G | T | exonic | HOXB2 | nonsynonymous | LIHC|1|373|0.00268 |
- | chr17 | 46620638 | 46620638 | C | T | exonic | HOXB2 | nonsynonymous | SKCM|1|368|0.00272 |
rs776826176 | chr17 | 46620505 | 46620505 | G | A | exonic | HOXB2 | synonymous | SKCM|1|368|0.00272 |
- | chr17 | 46620913 | 46620913 | C | T | exonic | HOXB2 | nonsynonymous | BLCA|1|396|0.00253 |
- | chr17 | 46622059 | 46622059 | G | A | exonic | HOXB2 | nonsynonymous | BRCA|1|982|0.00102 |
- | chr17 | 46620542 | 46620542 | C | T | exonic | HOXB2 | nonsynonymous | SKCM|1|368|0.00272 |
rs761024113 | chr17 | 46622001 | 46622001 | - | G | exonic | HOXB2 | frameshift | COADREAD|1|489|0.00204,READ|1|122|0.00820,STAD|1|395|0.00253,STES|1|395|0.00253 |
- | chr17 | 46622015 | 46622015 | G | A | exonic | HOXB2 | nonsynonymous | SKCM|1|368|0.00272 |
- | chr17 | 46620510 | 46620510 | C | A | exonic | HOXB2 | nonsynonymous | LIHC|1|373|0.00268 |
- | chr17 | 46620904 | 46620904 | C | A | exonic | HOXB2 | nonsynonymous | BRCA|1|982|0.00102 |
- | chr17 | 46621965 | 46621965 | G | A | exonic | HOXB2 | synonymous | STAD|1|395|0.00253,STES|1|395|0.00253 |
- | chr17 | 46622246 | 46622246 | C | T | exonic | HOXB2 | nonsynonymous | BLCA|1|396|0.00253 |
- | chr17 | 46620730 | 46620730 | G | C | exonic | HOXB2 | nonsynonymous | LIHC|1|373|0.00268 |
- | chr17 | 46620917 | 46620917 | C | T | exonic | HOXB2 | nonsynonymous | STAD|2|395|0.00506,STES|2|395|0.00506 |
- | chr17 | 46622154 | 46622154 | C | G | exonic | HOXB2 | synonymous | PRAD|1|499|0.00200 |
- | chr17 | 46620663 | 46620663 | G | A | exonic | HOXB2 | nonsynonymous | BLCA|1|396|0.00253 |
- | chr17 | 46622170 | 46622170 | G | A | exonic | HOXB2 | nonsynonymous | HNSC|1|512|0.00195 |
- | chr17 | 46620942 | 46620942 | C | - | exonic | HOXB2 | frameshift | LIHC|1|373|0.00268 |
- | chr17 | 46622245 | 46622245 | C | T | exonic | HOXB2 | nonsynonymous | ESCA|2|185|0.01081 |
- | chr17 | 46620856 | 46620856 | C | T | exonic | HOXB2 | synonymous | PRAD|1|499|0.00200 |
- | chr17 | 46622154 | 46622154 | C | T | exonic | HOXB2 | synonymous | BLCA|1|396|0.00253 |
- | chr17 | 46621003 | 46621003 | C | G | exonic | HOXB2 | nonsynonymous | LUAD|2|543|0.00368 |
- | chr17 | 46622131 | 46622132 | GG | - | exonic | HOXB2 | frameshift | PAAD|15|185|0.08108,TGCT|1|155|0.00645 |
- | chr17 | 46622224 | 46622224 | G | A | exonic | HOXB2 | nonsynonymous | CESC|1|194|0.00515 |
rs752163608 | chr17 | 46622233 | 46622233 | C | T | exonic | HOXB2 | nonsynonymous | LUAD|1|543|0.00184 |
- | chr17 | 46620631 | 46620631 | C | T | exonic | HOXB2 | synonymous | UCEC|1|248|0.00403 |
- | chr17 | 46620951 | 46620951 | C | G | exonic | HOXB2 | nonsynonymous | LUAD|1|543|0.00184 |
- | chr17 | 46620955 | 46620955 | G | A | exonic | HOXB2 | synonymous | LUAD|1|543|0.00184 |
- | chr17 | 46622084 | 46622084 | G | A | exonic | HOXB2 | stopgain | KIPAN|1|799|0.00125,KIRP|1|282|0.00355 |
- | chr17 | 46620887 | 46620887 | C | A | exonic | HOXB2 | nonsynonymous | BRCA|1|982|0.00102 |
TF_name | Disease_name | Disease_class | Disease_semantic_type | TF_disease_source |
---|
pathway_ID | pathway_name | pathway_source | gene_number | edge_number |
---|
GO_term_name | GO_term_type | TF_name |
---|---|---|
GO_EPITHELIUM_DEVELOPMENT | BP | HOXB2 |
GO_CIRCULATORY_SYSTEM_PROCESS | BP | HOXB2 |
GO_CRANIAL_NERVE_MORPHOGENESIS | BP | HOXB2 |
GO_CRANIAL_NERVE_DEVELOPMENT | BP | HOXB2 |
GO_ANATOMICAL_STRUCTURE_ARRANGEMENT | BP | HOXB2 |
GO_NEURAL_NUCLEUS_DEVELOPMENT | BP | HOXB2 |
GO_EMBRYONIC_ORGAN_MORPHOGENESIS | BP | HOXB2 |
GO_MORPHOGENESIS_OF_AN_EPITHELIAL_SHEET | BP | HOXB2 |
GO_AUTONOMIC_NERVOUS_SYSTEM_DEVELOPMENT | BP | HOXB2 |
GO_PATTERN_SPECIFICATION_PROCESS | BP | HOXB2 |
GO_PARASYMPATHETIC_NERVOUS_SYSTEM_DEVELOPMENT | BP | HOXB2 |