Sample overview of Gastric_Primary_Sample_T

Sample ID: Sample_02_205
Biosample type: Tissue
Tissue type: Stomach
Biosample name: Gastric_Primary_Sample_T
Data source: NCBI GEO/SRA
GSE ID: GSE75898
Cancer type: Gastric Cancer
CRC number: 135
TF number of all CRCs: 32
TF list of all CRCs: TCF7L2, ELF3, RREB1, FOXQ1, FOS, EHF, JUND, FOXP1, JUNB, SMAD3, PRDM1, KLF3, KLF5, FOSL2, ETS1, ELF1, SOX13, NFE2L2, MEF2D, BCL6, ETS2, ZNF217, GATA6, RARA, ARID5B, TEAD1, BHLHE40, HES1, CREB3L1, MNT, ZBTB7A, MECOM

The most representative CRC of Gastric_Primary_Sample_T
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Relationship plot of CRC model
TF number of this CRC: 14
CRC socre: 88.28571
TF list of the most representative CRC
TF name TF family Frequency of TFs
EHF ETS 99 / 135
ELF1 ETS 50 / 135
ELF3 ETS 119 / 135
ETS2 ETS 30 / 135
FOS TF_bZIP 102 / 135
FOSL2 TF_bZIP 55 / 135
FOXP1 Fork_head 92 / 135
FOXQ1 Fork_head 112 / 135
JUNB TF_bZIP 85 / 135
JUND TF_bZIP 94 / 135
PRDM1 zf-C2H2 66 / 135
RREB1 zf-C2H2 113 / 135
SMAD3 MH1 84 / 135
TCF7L2 HMG 135 / 135

All CRCs of Gastric_Primary_Sample_T
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CRC rank TF list of CRCs CRC score TF number of CRC Detail of CRC

Frequency of TFs that appear in CRCs
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TF name Frequency of TFs TF family Ensembl ID
TCF7L2 135 / 135 HMG ENSG00000148737
ELF3 119 / 135 ETS ENSG00000163435
RREB1 113 / 135 zf-C2H2 ENSG00000124782
FOXQ1 112 / 135 Fork_head ENSG00000164379
FOS 102 / 135 TF_bZIP ENSG00000170345
EHF 99 / 135 ETS ENSG00000135373
JUND 94 / 135 TF_bZIP ENSG00000130522
FOXP1 92 / 135 Fork_head ENSG00000114861
JUNB 85 / 135 TF_bZIP ENSG00000171223
SMAD3 84 / 135 MH1 ENSG00000166949
PRDM1 66 / 135 zf-C2H2 ENSG00000057657
KLF3 61 / 135 zf-C2H2 ENSG00000109787
KLF5 56 / 135 zf-C2H2 ENSG00000102554
ETS1 55 / 135 ETS ENSG00000134954
FOSL2 55 / 135 TF_bZIP ENSG00000075426
ELF1 50 / 135 ETS ENSG00000120690
NFE2L2 42 / 135 TF_bZIP ENSG00000116044
SOX13 42 / 135 HMG ENSG00000143842
MEF2D 41 / 135 SRF ENSG00000116604
BCL6 33 / 135 ZBTB ENSG00000113916
ETS2 30 / 135 ETS ENSG00000157557
ZNF217 26 / 135 zf-C2H2 ENSG00000171940
GATA6 26 / 135 zf-GATA ENSG00000141448
RARA 23 / 135 THR-like ENSG00000131759
TEAD1 22 / 135 TEA ENSG00000187079
ARID5B 22 / 135 ARID ENSG00000150347
BHLHE40 22 / 135 bHLH ENSG00000134107
HES1 18 / 135 bHLH ENSG00000114315
CREB3L1 17 / 135 TF_bZIP ENSG00000157613
MNT 16 / 135 bHLH ENSG00000070444
ZBTB7A 12 / 135 ZBTB ENSG00000178951
MECOM 10 / 135 zf-C2H2 ENSG00000085276

Indegree and outdegree of TFs
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TF name Indegree Outdegree Node connections
ZNF217 32 28 60
FOXP1 32 49 81
JUNB 33 45 78
JUND 31 48 79
SMAD3 33 46 79
BHLHE40 31 40 71
ELF1 29 48 77
TEAD1 24 49 73
ELF3 34 49 83
RREB1 34 48 82
RARA 25 49 74
MECOM 25 36 61
NFE2L2 29 47 76
SOX13 28 49 77
MNT 32 25 57
ETS2 35 34 69
KLF5 29 48 77
ETS1 28 49 77
FOSL2 35 41 76
KLF3 32 46 78
FOXQ1 35 46 81
ZBTB7A 35 31 66
FOS 35 46 81
EHF 32 49 81
GATA6 32 34 66
ARID5B 32 34 66
TCF7L2 34 49 83
CREB3L1 31 35 66
PRDM1 28 49 77
MEF2D 29 46 75
HES1 30 38 68
BCL6 26 49 75

Expression of TFs in all CRCs