Sample ID: | Sample_02_183 |
Biosample type: | Cell line |
Tissue type: | Skin |
Biosample name: | SKMEL2 |
Data source: | NCBI GEO/SRA |
GSE ID: | GSE75352 |
Cancer type: | melanoma |
CRC number: | 39 |
TF number of all CRCs: | 21 |
TF list of all CRCs: | FOXD3, SMAD3, TEAD1, SOX10, SOX13, TFAP2C, TGIF1, ETV4, FOXD2, JUNB, RARA, USF2, LEF1, BHLHE40, CREB3L2, PKNOX2, ERF, MEF2C, SREBF2, ETV5, MITF |
CRC rank | TF list of CRCs | CRC score | TF number of CRC | Detail of CRC |
---|
TF name | Frequency of TFs | TF family | Ensembl ID |
---|---|---|---|
FOXD3 | 39 / 39 | Fork_head | ENSG00000187140 |
SMAD3 | 35 / 39 | MH1 | ENSG00000166949 |
TEAD1 | 35 / 39 | TEA | ENSG00000187079 |
SOX10 | 31 / 39 | HMG | ENSG00000100146 |
SOX13 | 30 / 39 | HMG | ENSG00000143842 |
TFAP2C | 30 / 39 | AP-2 | ENSG00000087510 |
TGIF1 | 23 / 39 | Homeobox | ENSG00000177426 |
ETV4 | 22 / 39 | ETS | ENSG00000175832 |
FOXD2 | 18 / 39 | Fork_head | ENSG00000186564 |
JUNB | 18 / 39 | TF_bZIP | ENSG00000171223 |
RARA | 18 / 39 | THR-like | ENSG00000131759 |
LEF1 | 16 / 39 | HMG | ENSG00000138795 |
USF2 | 16 / 39 | bHLH | ENSG00000105698 |
BHLHE40 | 12 / 39 | bHLH | ENSG00000134107 |
CREB3L2 | 10 / 39 | TF_bZIP | ENSG00000182158 |
ERF | 9 / 39 | ETS | ENSG00000105722 |
PKNOX2 | 9 / 39 | Homeobox | ENSG00000165495 |
MEF2C | 8 / 39 | SRF | ENSG00000081189 |
SREBF2 | 8 / 39 | bHLH | ENSG00000198911 |
ETV5 | 4 / 39 | ETS | ENSG00000244405 |
MITF | 3 / 39 | bHLH | ENSG00000187098 |
TF name | Indegree | Outdegree | Node connections |
---|---|---|---|
JUNB | 22 | 33 | 55 |
SMAD3 | 22 | 38 | 60 |
ERF | 23 | 28 | 51 |
MITF | 21 | 26 | 47 |
TEAD1 | 22 | 38 | 60 |
RARA | 20 | 38 | 58 |
SREBF2 | 15 | 38 | 53 |
BHLHE40 | 20 | 30 | 50 |
TFAP2C | 19 | 38 | 57 |
SOX13 | 20 | 38 | 58 |
USF2 | 19 | 36 | 55 |
FOXD2 | 20 | 33 | 53 |
FOXD3 | 22 | 37 | 59 |
LEF1 | 18 | 36 | 54 |
PKNOX2 | 19 | 34 | 53 |
ETV5 | 23 | 22 | 45 |
ETV4 | 19 | 37 | 56 |
CREB3L2 | 21 | 29 | 50 |
MEF2C | 15 | 36 | 51 |
SOX10 | 23 | 37 | 60 |
TGIF1 | 23 | 36 | 59 |