TF information

TF name: HOXC8
TF family: Homeobox
Ensembl gene ID: ENSG00000037965
Ensembl protein ID: ENSP00000040584
Entrez gene ID: 3224
Database name Link Database name Link
NCBI Gene: Genecards:
Uniprot: Wikipedia:
Cosmic 3D: Geneontology:
CCLE:

Frequency of HOXC8 in all biosamples
Sample ID Biosample type Tissue type Biosample name TF Frequency
Sample_02_069Cell lineBrainSF2680.21374045801527
Sample_02_182Cell lineHuman melanomaLOX-IMVI0.10344827586207
Sample_02_228Cell lineOesophagusKYSE5100.020503261882572
Sample_02_258OtherLungNCI-H1299_EGFP-NEO_reporter_cells_DMSO0.095555555555556
Sample_02_296Cell lineNeuroblastomaCLB-BER-Lud0.5256312165264
Sample_02_312Cell lineNeuroblastomaSK-N-BE_2-C0.5531914893617
Sample_02_359Cell lineColonColo7410.096385542168675
Sample_02_395Cell lineMammary GlandBT-5490.15356643356643

HOXC8 distribution in samples’ most representative CRC
Sample ID Tissue type Biosample type Biosample name
Sample_02_296NeuroblastomaCell lineCLB-BER-Lud
Sample_02_312NeuroblastomaCell lineSK-N-BE_2-C

HOXC8 distribution in all CRCs
Biosample type
Biosample name
Sample ID

Genomic distribution of SEs associated with HOXC8
Download

Mutation of HOXC8
Database name Link
gnomAD: gnomAD
ExAC: ExAC
ICGC:
Database name Link
Cosmic:
Cosmic cell lines:
Depmap:

TCGA somatic mutations and clinical variants of HOXC8

rsID Chr Start Stop Ref Alt Gene_region Gene_symble Effect TCGA_Occurrence
-chr125440311854403118ATexonicHOXC8nonsynonymous LUAD|1|543|0.00184
-chr125440322154403221CTexonicHOXC8synonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr125440317054403170GCexonicHOXC8nonsynonymous BLCA|1|396|0.00253
-chr125440492954404929GCexonicHOXC8nonsynonymous BLCA|1|396|0.00253
-chr125440332254403328CCTCCAA-exonicHOXC8frameshift KIPAN|1|799|0.00125,KIRC|1|451|0.00222
-chr125440332554403325C-exonicHOXC8frameshift LUAD|1|543|0.00184
rs749816109chr125440334254403342GAexonicHOXC8nonsynonymous BLCA|1|396|0.00253
-chr125440349154403491GAexonicHOXC8stopgain CESC|1|194|0.00515
-chr125440494354404943CGexonicHOXC8synonymous COADREAD|1|489|0.00204,READ|1|122|0.00820
-chr125440514854405148GAexonicHOXC8nonsynonymous SKCM|2|368|0.00543
rs777616754chr125440333554403335TCexonicHOXC8synonymous LIHC|1|373|0.00268,LUAD|1|543|0.00184
-chr125440496354404963GCexonicHOXC8nonsynonymous LIHC|1|373|0.00268
-chr125440350454403504GAexonicHOXC8nonsynonymous UCEC|1|248|0.00403
rs777416892chr125440339554403395GAexonicHOXC8synonymous BLCA|1|396|0.00253
rs142847294chr125440311354403113CTexonicHOXC8synonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr125440501554405015GAexonicHOXC8synonymous CESC|1|194|0.00515
-chr125440510154405101TGexonicHOXC8nonsynonymous BRCA|1|982|0.00102
rs765067304chr125440346654403466CTexonicHOXC8nonsynonymous HNSC|1|512|0.00195
rs779333432chr125440350354403503CAexonicHOXC8nonsynonymous LUSC|1|178|0.00562
-chr125440330754403307GTexonicHOXC8nonsynonymous HNSC|1|512|0.00195
-chr125440341654403416CAexonicHOXC8synonymous BRCA|1|982|0.00102,COAD|1|367|0.00272,COADREAD|1|489|0.00204
-chr125440333254403332CAexonicHOXC8nonsynonymous UCEC|1|248|0.00403
-chr125440316154403161CAexonicHOXC8nonsynonymous KIPAN|1|799|0.00125,KIRC|1|451|0.00222
-chr125440321454403214TAexonicHOXC8nonsynonymous KIPAN|1|799|0.00125,KIRP|1|282|0.00355
-chr125440324554403245CGexonicHOXC8nonsynonymous BLCA|1|396|0.00253
-chr125440338654403386GAexonicHOXC8synonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr125440506754405067GAexonicHOXC8nonsynonymous BLCA|1|396|0.00253
-chr125440505254405052AGexonicHOXC8nonsynonymous LIHC|1|373|0.00268
-chr125440329854403298GTexonicHOXC8nonsynonymous SARC|1|247|0.00405
-chr125440326954403269CAexonicHOXC8synonymous PRAD|1|499|0.00200
-chr125440501754405017ATexonicHOXC8nonsynonymous LUAD|1|543|0.00184
-chr125440487754404877G-exonicHOXC8frameshift COAD|2|367|0.00545,COADREAD|2|489|0.00409
-chr125440515754405157ACexonicHOXC8nonsynonymous OV|1|469|0.00213
-chr125440335054403350C-exonicHOXC8frameshift KIPAN|1|799|0.00125,KIRC|1|451|0.00222
-chr125440489454404894GAexonicHOXC8nonsynonymous SKCM|1|368|0.00272
-chr125440491654404916GAexonicHOXC8synonymous CESC|1|194|0.00515
-chr125440497754404977GAexonicHOXC8nonsynonymous BLCA|1|396|0.00253
-chr125440506754405067GTexonicHOXC8nonsynonymous LIHC|1|373|0.00268

Disease information of HOXC8
TF_name Disease_name Disease_class Disease_semantic_type TF_disease_source

Pathway associated with HOXC8
pathway_ID pathway_name pathway_source gene_number edge_number

Go term information of HOXC8
GO_term_name GO_term_type TF_name

Survival analysis of HOXC8



Calculate the hazards ratio based on Cox PH Model.
Add the 95% CI as dotted line.

Expression of HOXC8