Sample ID | Biosample type | Tissue type | Biosample name | TF Frequency |
---|---|---|---|---|
Sample_02_296 | Cell line | Neuroblastoma | CLB-BER-Lud | 0.12165263963275 |
Sample_02_299 | Cell line | Neuroblastoma | CLB-MA | 0.045563549160671 |
Sample_02_304 | Cell line | Neuroblastoma | N206 | 0.16983695652174 |
Sample_02_309 | Cell line | Neuroblastoma | SJNB6 | 0.085308056872038 |
Sample_02_310 | Cell line | Neuroblastoma | SJNB8 | 0.064220183486239 |
Sample_02_313 | Cell line | Neuroblastoma | SK-N-DZ | 0.13899613899614 |
Sample_02_319 | Cell line | Neuroblastoma | NB-EBc1 | 0.086705202312139 |
Sample_02_359 | Cell line | Colon | Colo741 | 0.25 |
Sample_02_403 | Cell line | Mammary Gland | T-47D_untreat | 0.38636363636364 |
Sample ID | Tissue type | Biosample type | Biosample name |
---|---|---|---|
Sample_02_304 | Neuroblastoma | Cell line | N206 |
rsID | Chr | Start | Stop | Ref | Alt | Gene_region | Gene_symble | Effect | TCGA_Occurrence |
---|---|---|---|---|---|---|---|---|---|
- | chr20 | 306756 | 306756 | C | G | exonic | SOX12 | nonsynonymous | PRAD|1|499|0.00200 |
- | chr20 | 306672 | 306679 | CCCCGAGC | - | exonic | SOX12 | frameshift | KIPAN|1|799|0.00125,KIRP|1|282|0.00355 |
rs867428648 | chr20 | 306903 | 306903 | G | A | exonic | SOX12 | nonsynonymous | COAD|1|367|0.00272,COADREAD|1|489|0.00204 |
- | chr20 | 306862 | 306862 | C | T | exonic | SOX12 | synonymous | THCA|1|504|0.00198 |
- | chr20 | 307492 | 307492 | C | G | exonic | SOX12 | nonsynonymous | BLCA|1|396|0.00253 |
- | chr20 | 306653 | 306653 | G | T | exonic | SOX12 | stopgain | BLCA|1|396|0.00253 |
- | chr20 | 307440 | 307440 | G | A | exonic | SOX12 | nonsynonymous | HNSC|1|512|0.00195 |
- | chr20 | 307342 | 307342 | - | C | exonic | SOX12 | frameshift | ESCA|1|185|0.00541 |
- | chr20 | 306839 | 306839 | C | T | exonic | SOX12 | nonsynonymous | BLCA|1|396|0.00253 |
- | chr20 | 307448 | 307448 | G | A | exonic | SOX12 | nonsynonymous | BLCA|1|396|0.00253,LUAD|1|543|0.00184 |
- | chr20 | 307338 | 307338 | G | A | exonic | SOX12 | nonsynonymous | SARC|1|247|0.00405 |
- | chr20 | 306702 | 306702 | A | G | exonic | SOX12 | nonsynonymous | COADREAD|1|489|0.00204,READ|1|122|0.00820 |
- | chr20 | 306806 | 306806 | C | T | exonic | SOX12 | synonymous | COAD|1|367|0.00272,COADREAD|1|489|0.00204 |
- | chr20 | 306784 | 306784 | G | C | exonic | SOX12 | nonsynonymous | CESC|1|194|0.00515 |
- | chr20 | 307342 | 307342 | G | T | exonic | SOX12 | synonymous | BRCA|1|982|0.00102 |
rs73071018 | chr20 | 306733 | 306733 | G | A | exonic | SOX12 | synonymous | DLBC|1|48|0.02083 |
- | chr20 | 306916 | 306916 | G | A | exonic | SOX12 | synonymous | SKCM|1|368|0.00272 |
- | chr20 | 306825 | 306825 | A | T | exonic | SOX12 | nonsynonymous | BLCA|1|396|0.00253 |
rs532036846 | chr20 | 307249 | 307249 | G | A | exonic | SOX12 | synonymous | KICH|1|66|0.01515,KIPAN|1|799|0.00125 |
rs760848645 | chr20 | 307372 | 307372 | C | T | exonic | SOX12 | synonymous | SARC|1|247|0.00405 |
- | chr20 | 306791 | 306791 | G | A | exonic | SOX12 | nonsynonymous | LIHC|1|373|0.00268 |
TF_name | Disease_name | Disease_class | Disease_semantic_type | TF_disease_source |
---|
pathway_ID | pathway_name | pathway_source | gene_number | edge_number |
---|
GO_term_name | GO_term_type | TF_name |
---|---|---|
GO_SPINAL_CORD_DEVELOPMENT | BP | SOX12 |
GO_TRANSCRIPTIONAL_REPRESSOR_ACTIVITY_RNA_POLYMERASE_II_TRANSCRIPTION_FACTOR_BINDING | MF | SOX12 |
GO_TRANSCRIPTIONAL_ACTIVATOR_ACTIVITY_RNA_POLYMERASE_II_CORE_PROMOTER_PROXIMAL_REGION_SEQUENCE_SPECIFIC_BINDING | MF | SOX12 |
GO_RNA_POLYMERASE_II_TRANSCRIPTION_COACTIVATOR_ACTIVITY | MF | SOX12 |