Sample ID | Biosample type | Tissue type | Biosample name | TF Frequency |
---|---|---|---|---|
Sample_02_079 | Cell line | Mammary Gland | T-47D_1 | 0.33333333333333 |
Sample_02_095 | Cell line | Mammary Gland | MDA-MB-468 | 0.11945525291829 |
Sample_02_268 | Cell line | Kidney | A-498 | 0.011260845486432 |
Sample_02_354 | Cell line | Colon | Colo205 | 0.022522522522523 |
Sample_02_358 | Cell line | Colon | LS180 | 0.13428120063191 |
Sample_02_403 | Cell line | Mammary Gland | T-47D_untreat | 0.30681818181818 |
Sample ID | Tissue type | Biosample type | Biosample name |
---|---|---|---|
Sample_02_079 | Mammary Gland | Cell line | T-47D_1 |
rsID | Chr | Start | Stop | Ref | Alt | Gene_region | Gene_symble | Effect | TCGA_Occurrence |
---|---|---|---|---|---|---|---|---|---|
rs772560593 | chr11 | 129246109 | 129246109 | C | T | exonic | BARX2 | nonsynonymous | SKCM|1|368|0.00272 |
rs139211336 | chr11 | 129321276 | 129321276 | G | A | exonic | BARX2 | synonymous | GBMLGG|1|820|0.00122,LGG|1|530|0.00189 |
- | chr11 | 129246035 | 129246035 | C | A | exonic | BARX2 | synonymous | LUAD|1|543|0.00184 |
- | chr11 | 129321090 | 129321090 | C | T | exonic | BARX2 | synonymous | SKCM|1|368|0.00272 |
rs769021373 | chr11 | 129321073 | 129321073 | C | T | exonic | BARX2 | nonsynonymous | SKCM|1|368|0.00272 |
- | chr11 | 129306656 | 129306656 | C | T | exonic | BARX2 | synonymous | SKCM|1|368|0.00272 |
- | chr11 | 129306719 | 129306719 | C | T | exonic | BARX2 | synonymous | SKCM|1|368|0.00272 |
- | chr11 | 129246025 | 129246025 | C | T | exonic | BARX2 | nonsynonymous | SKCM|1|368|0.00272 |
- | chr11 | 129306867 | 129306867 | C | T | exonic | BARX2 | nonsynonymous | SKCM|1|368|0.00272 |
- | chr11 | 129306903 | 129306903 | G | A | exonic | BARX2 | nonsynonymous | SKCM|1|368|0.00272 |
- | chr11 | 129312648 | 129312648 | G | T | intronic | BARX2 | unknown | ESCA|1|185|0.00541 |
- | chr11 | 129312769 | 129312769 | G | T | exonic | BARX2 | nonsynonymous | SKCM|1|368|0.00272 |
- | chr11 | 129246050 | 129246050 | G | T | exonic | BARX2 | nonsynonymous | UCEC|1|248|0.00403 |
- | chr11 | 129246048 | 129246048 | G | A | exonic | BARX2 | nonsynonymous | BLCA|1|396|0.00253 |
rs551250441 | chr11 | 129306679 | 129306679 | C | T | exonic | BARX2 | nonsynonymous | BRCA|1|982|0.00102 |
- | chr11 | 129306804 | 129306804 | - | T | exonic | BARX2 | frameshift | HNSC|1|512|0.00195 |
- | chr11 | 129306802 | 129306802 | C | A | exonic | BARX2 | nonsynonymous | LIHC|1|373|0.00268 |
- | chr11 | 129306795 | 129306795 | G | A | exonic | BARX2 | nonsynonymous | SKCM|1|368|0.00272 |
- | chr11 | 129306670 | 129306670 | C | T | exonic | BARX2 | nonsynonymous | BRCA|1|982|0.00102 |
- | chr11 | 129306882 | 129306882 | G | T | exonic | BARX2 | stopgain | BRCA|1|982|0.00102 |
- | chr11 | 129306860 | 129306860 | C | A | exonic | BARX2 | synonymous | LUAD|1|543|0.00184 |
- | chr11 | 129246032 | 129246032 | G | T | exonic | BARX2 | nonsynonymous | COAD|1|367|0.00272,COADREAD|1|489|0.00204 |
- | chr11 | 129321257 | 129321257 | A | C | exonic | BARX2 | nonsynonymous | STAD|1|395|0.00253,STES|1|395|0.00253 |
- | chr11 | 129321181 | 129321181 | G | A | exonic | BARX2 | nonsynonymous | COAD|1|367|0.00272,COADREAD|1|489|0.00204 |
- | chr11 | 129306871 | 129306871 | C | T | exonic | BARX2 | nonsynonymous | HNSC|1|512|0.00195 |
- | chr11 | 129306661 | 129306661 | G | C | exonic | BARX2 | nonsynonymous | LUAD|1|543|0.00184 |
- | chr11 | 129245986 | 129245986 | G | T | exonic | BARX2 | nonsynonymous | UCEC|1|248|0.00403 |
rs781012197 | chr11 | 129306839 | 129306839 | G | A | exonic | BARX2 | synonymous | GBM|1|290|0.00345,GBMLGG|1|820|0.00122 |
- | chr11 | 129321287 | 129321287 | C | T | exonic | BARX2 | nonsynonymous | SKCM|2|368|0.00543 |
rs370726265 | chr11 | 129306838 | 129306838 | C | T | exonic | BARX2 | nonsynonymous | STAD|1|395|0.00253,STES|1|395|0.00253 |
- | chr11 | 129246117 | 129246117 | G | A | exonic | BARX2 | nonsynonymous | SKCM|1|368|0.00272 |
- | chr11 | 129312796 | 129312796 | G | A | exonic | BARX2 | synonymous | UCEC|1|248|0.00403 |
rs767048719 | chr11 | 129312620 | 129312620 | C | T | intronic | BARX2 | unknown | CESC|1|194|0.00515 |
- | chr11 | 129321068 | 129321068 | A | C | exonic | BARX2 | nonsynonymous | STAD|2|395|0.00506,STES|2|395|0.00506 |
- | chr11 | 129321169 | 129321169 | C | T | exonic | BARX2 | stopgain | PAAD|1|185|0.00541 |
rs755171720 | chr11 | 129321211 | 129321211 | C | T | exonic | BARX2 | nonsynonymous | UCEC|1|248|0.00403 |
- | chr11 | 129306851 | 129306851 | G | A | exonic | BARX2 | synonymous | SKCM|1|368|0.00272 |
- | chr11 | 129312807 | 129312807 | A | G | exonic | BARX2 | nonsynonymous | PRAD|1|499|0.00200 |
- | chr11 | 129246011 | 129246011 | C | T | exonic | BARX2 | synonymous | LUAD|1|543|0.00184 |
- | chr11 | 129321220 | 129321220 | C | T | exonic | BARX2 | nonsynonymous | LUSC|1|178|0.00562 |
- | chr11 | 129321174 | 129321174 | G | A | exonic | BARX2 | synonymous | COAD|1|367|0.00272,COADREAD|1|489|0.00204 |
- | chr11 | 129306905 | 129306905 | G | A | exonic | BARX2 | synonymous | SKCM|1|368|0.00272 |
- | chr11 | 129306709 | 129306709 | C | T | exonic | BARX2 | nonsynonymous | SKCM|1|368|0.00272 |
- | chr11 | 129306882 | 129306882 | G | A | exonic | BARX2 | nonsynonymous | UCEC|1|248|0.00403 |
rs867138901 | chr11 | 129306798 | 129306798 | G | A | exonic | BARX2 | nonsynonymous | CESC|1|194|0.00515 |
- | chr11 | 129321282 | 129321282 | C | A | exonic | BARX2 | synonymous | LUSC|1|178|0.00562 |
rs778608962 | chr11 | 129306768 | 129306768 | G | A | exonic | BARX2 | nonsynonymous | SKCM|1|368|0.00272 |
- | chr11 | 129306729 | 129306729 | C | T | exonic | BARX2 | nonsynonymous | SKCM|1|368|0.00272 |
- | chr11 | 129246012 | 129246012 | G | A | exonic | BARX2 | nonsynonymous | BLCA|1|396|0.00253 |
rs202180662 | chr11 | 129321249 | 129321249 | G | A | exonic | BARX2 | synonymous | UCEC|1|248|0.00403 |
- | chr11 | 129246058 | 129246058 | C | T | exonic | BARX2 | nonsynonymous | UCS|1|57|0.01754 |
- | chr11 | 129306793 | 129306793 | G | A | exonic | BARX2 | nonsynonymous | SKCM|1|368|0.00272 |
- | chr11 | 129306863 | 129306863 | G | A | exonic | BARX2 | synonymous | SKCM|1|368|0.00272 |
- | chr11 | 129306822 | 129306822 | G | A | exonic | BARX2 | nonsynonymous | SKCM|1|368|0.00272 |
- | chr11 | 129321161 | 129321161 | A | G | exonic | BARX2 | nonsynonymous | PAAD|1|185|0.00541 |
- | chr11 | 129246023 | 129246023 | C | G | exonic | BARX2 | synonymous | BLCA|2|396|0.00505 |
- | chr11 | 129245990 | 129245990 | G | A | exonic | BARX2 | synonymous | HNSC|1|512|0.00195 |
- | chr11 | 129321108 | 129321108 | G | A | exonic | BARX2 | synonymous | COADREAD|1|489|0.00204,READ|1|122|0.00820 |
- | chr11 | 129306816 | 129306816 | G | A | exonic | BARX2 | nonsynonymous | SKCM|1|368|0.00272,UCEC|1|248|0.00403 |
- | chr11 | 129306807 | 129306807 | G | C | exonic | BARX2 | nonsynonymous | SKCM|1|368|0.00272 |
rs3827487 | chr11 | 129312660 | 129312660 | C | T | intronic | BARX2 | unknown | BRCA|1|982|0.00102 |
- | chr11 | 129321185 | 129321185 | T | A | exonic | BARX2 | nonsynonymous | KIPAN|1|799|0.00125,KIRP|1|282|0.00355 |
rs750893952 | chr11 | 129306826 | 129306826 | C | T | exonic | BARX2 | nonsynonymous | SKCM|1|368|0.00272 |
- | chr11 | 129306730 | 129306730 | C | G | exonic | BARX2 | nonsynonymous | ESCA|1|185|0.00541 |
- | chr11 | 129321248 | 129321248 | C | A | exonic | BARX2 | nonsynonymous | LUSC|1|178|0.00562 |
- | chr11 | 129306690 | 129306690 | C | A | exonic | BARX2 | nonsynonymous | ACC|1|90|0.01111 |
rs149011396 | chr11 | 129306737 | 129306737 | C | T | exonic | BARX2 | synonymous | SKCM|2|368|0.00543 |
TF_name | Disease_name | Disease_class | Disease_semantic_type | TF_disease_source |
---|
pathway_ID | pathway_name | pathway_source | gene_number | edge_number |
---|
GO_term_name | GO_term_type | TF_name |
---|---|---|
GO_CELL_AGGREGATION | BP | BARX2 |
GO_ORGAN_MORPHOGENESIS | BP | BARX2 |
GO_CONNECTIVE_TISSUE_DEVELOPMENT | BP | BARX2 |
GO_MUSCLE_CELL_DIFFERENTIATION | BP | BARX2 |
GO_SKELETAL_SYSTEM_MORPHOGENESIS | BP | BARX2 |
GO_TRANSCRIPTION_FACTOR_COMPLEX | CC | BARX2 |
GO_NUCLEIC_ACID_BINDING_TRANSCRIPTION_FACTOR_ACTIVITY | MF | BARX2 |