TF information

TF name: HOXC6
TF family: Homeobox
Ensembl gene ID: ENSG00000197757
Ensembl protein ID: ENSP00000243108, ENSP00000377864
Entrez gene ID: 3223
Database name Link Database name Link
NCBI Gene: Genecards:
Uniprot: Wikipedia:
Cosmic 3D: Geneontology:
CCLE:

Frequency of HOXC6 in all biosamples
Sample ID Biosample type Tissue type Biosample name TF Frequency
Sample_01_001Cell lineProstate22Rv10.046004842615012
Sample_02_069Cell lineBrainSF2680.13740458015267
Sample_02_296Cell lineNeuroblastomaCLB-BER-Lud0.39403213465953
Sample_02_312Cell lineNeuroblastomaSK-N-BE_2-C0.67021276595745

HOXC6 distribution in samples’ most representative CRC
Sample ID Tissue type Biosample type Biosample name
Sample_02_312NeuroblastomaCell lineSK-N-BE_2-C

HOXC6 distribution in all CRCs
Biosample type
Biosample name
Sample ID

Genomic distribution of SEs associated with HOXC6
Download

Mutation of HOXC6
Database name Link
gnomAD: gnomAD
ExAC: ExAC
ICGC:
Database name Link
Cosmic:
Cosmic cell lines:
Depmap:

TCGA somatic mutations and clinical variants of HOXC6

rsID Chr Start Stop Ref Alt Gene_region Gene_symble Effect TCGA_Occurrence
-chr125442351954423519CAexonicHOXC6nonsynonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr125442269754422697CTexonicHOXC6nonsynonymous HNSC|1|512|0.00195
rs757138274chr125442235054422350CTexonicHOXC6synonymous KIPAN|1|799|0.00125,KIRP|1|282|0.00355
-chr125442358054423580CTexonicHOXC6nonsynonymous SKCM|1|368|0.00272
-chr125442348554423485GAexonicHOXC6synonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr125442253254422532CGexonicHOXC6nonsynonymous LUAD|1|543|0.00184
-chr125442237054422370CTexonicHOXC6nonsynonymous BRCA|2|982|0.00204
-chr125442262454422624GCexonicHOXC6nonsynonymous BLCA|1|396|0.00253
-chr125442356054423560CTexonicHOXC6synonymous BLCA|1|396|0.00253
-chr125442270754422709TGA-splicingHOXC6unknown BRCA|1|982|0.00102
-chr125442373954423739ACexonicHOXC6nonsynonymous LUAD|4|543|0.00737
-chr125442364454423644CTexonicHOXC6synonymous LUAD|1|543|0.00184
-chr125442253254422532CAexonicHOXC6nonsynonymous OV|1|469|0.00213
-chr125442344454423444GAexonicHOXC6nonsynonymous UCEC|1|248|0.00403
-chr125442234754422347CTexonicHOXC6synonymous BLCA|1|396|0.00253
-chr125442265454422654ACexonicHOXC6nonsynonymous UCEC|1|248|0.00403
-chr125442245754422457CGexonicHOXC6nonsynonymous BLCA|1|396|0.00253
-chr125442347754423477ACexonicHOXC6nonsynonymous OV|1|469|0.00213
rs529857999chr125442348854423488GAexonicHOXC6synonymous SKCM|1|368|0.00272
-chr125442267254422672TCexonicHOXC6nonsynonymous KIPAN|2|799|0.00250,KIRC|2|451|0.00443
-chr125442352454423524CTexonicHOXC6synonymous SKCM|1|368|0.00272
-chr125442248854422488CTexonicHOXC6synonymous UCEC|1|248|0.00403
rs61736613chr125442356654423566CTexonicHOXC6synonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr125442371254423712GTexonicHOXC6nonsynonymous LIHC|1|373|0.00268
-chr125442262454422624GAexonicHOXC6nonsynonymous HNSC|1|512|0.00195
-chr125442259654422596GTexonicHOXC6nonsynonymous UCEC|1|248|0.00403
-chr125442267654422676CGexonicHOXC6nonsynonymous SKCM|1|368|0.00272
-chr125442262254422622CAexonicHOXC6nonsynonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204
-chr125442356954423569GAexonicHOXC6synonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr125442238154422381CTexonicHOXC6nonsynonymous SKCM|1|368|0.00272
-chr125442347154423471CTexonicHOXC6nonsynonymous BRCA|1|982|0.00102
-chr125442265354422653GCexonicHOXC6nonsynonymous BLCA|1|396|0.00253
-chr125442356154423561GTexonicHOXC6nonsynonymous LIHC|1|373|0.00268
-chr125442251454422514AGexonicHOXC6nonsynonymous KIPAN|1|799|0.00125,KIRC|1|451|0.00222
rs145731630chr125442247954422479GAexonicHOXC6synonymous DLBC|1|48|0.02083
-chr125442267354422673AGexonicHOXC6nonsynonymous UCEC|1|248|0.00403
-chr125442255554422555CAexonicHOXC6nonsynonymous UCEC|1|248|0.00403
-chr125442246354422463CAexonicHOXC6nonsynonymous LUSC|1|178|0.00562
-chr125442263454422634GTexonicHOXC6nonsynonymous HNSC|1|512|0.00195
-chr125442260154422601CGexonicHOXC6stopgain CESC|1|194|0.00515
-chr125442267554422675CAexonicHOXC6nonsynonymous KIPAN|1|799|0.00125,KIRP|1|282|0.00355
-chr125442236654422366CTexonicHOXC6nonsynonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr125442359354423593CTexonicHOXC6synonymous BLCA|1|396|0.00253
-chr125442360854423608GTexonicHOXC6nonsynonymous LUSC|1|178|0.00562
-chr125442255954422559CTexonicHOXC6nonsynonymous HNSC|1|512|0.00195
rs765056816chr125442365854423658-GexonicHOXC6frameshift COAD|1|367|0.00272,COADREAD|1|489|0.00204

Disease information of HOXC6
TF_name Disease_name Disease_class Disease_semantic_type TF_disease_source

Pathway associated with HOXC6
pathway_ID pathway_name pathway_source gene_number edge_number

Go term information of HOXC6
GO_term_name GO_term_type TF_name

Survival analysis of HOXC6



Calculate the hazards ratio based on Cox PH Model.
Add the 95% CI as dotted line.

Expression of HOXC6