TF information
| TF name: | NR2F6 |
| TF family: | RXR-like |
| Ensembl gene ID: | ENSG00000160113 |
| Ensembl protein ID: | ENSP00000291442, ENSP00000471686 |
| Entrez gene ID: | 2063 |
| Database name | Link | Database name | Link |
| NCBI Gene: |  |
Genecards: |  |
| Uniprot: |  |
Wikipedia: |  |
| Cosmic 3D: |  |
Geneontology: |  |
| CCLE: |  |
Frequency of NR2F6 in all biosamples
| Sample ID | Biosample type | Tissue type | Biosample name | TF Frequency |
|---|---|---|---|---|
| Sample_02_095 | Cell line | Mammary Gland | MDA-MB-468 | 0.089494163424125 |
| Sample_02_280 | Cell line | Mammary Gland | SUM159_DMSO_24h | 0.9 |
| Sample_02_285 | Cell line | Liver | HuH7_untreat | 0.1602787456446 |
| Sample_02_322 | Cell line | Colon | Caco-2 | 0.1628532974428 |
| Sample_02_358 | Cell line | Colon | LS180 | 0.1129541864139 |
NR2F6 distribution in samples’ most representative CRC
| Sample ID | Tissue type | Biosample type | Biosample name |
|---|---|---|---|
| Sample_02_280 | Mammary Gland | Cell line | SUM159_DMSO_24h |
NR2F6 distribution in all CRCs
Genomic distribution of SEs associated with NR2F6
Genomic distribution of SEs associated with TF
Figure legend:
Genomic distribution of SEs associated with TF: It can roughly understand the genomic regions of SEs associated with TF, and help to carry out the next analysis, such as knocking down the experiment.
What is important information?
The yellow box can be thought of as the common genomic regions that regulates the SEs associated with TF. For example, if a knockdown experiment is performed on this region, then theoretically, the expression of the TF will be greatly reduced.
| Database name | Link |
|---|---|
| Cosmic: |  |
| Cosmic cell lines: |  |
| Depmap: |  |
TCGA somatic mutations and clinical variants of NR2F6
| rsID | Chr | Start | Stop | Ref | Alt | Gene_region | Gene_symble | Effect | TCGA_Occurrence |
|---|---|---|---|---|---|---|---|---|---|
| - | chr19 | 17355849 | 17355849 | C | T | exonic | NR2F6 | nonsynonymous | COAD|1|367|0.00272,COADREAD|1|489|0.00204 |
| - | chr19 | 17343290 | 17343290 | C | T | exonic | NR2F6 | synonymous | COAD|1|367|0.00272,COADREAD|1|489|0.00204 |
| - | chr19 | 17351502 | 17351502 | G | A | exonic | NR2F6 | synonymous | SKCM|1|368|0.00272 |
| - | chr19 | 17355924 | 17355924 | G | A | exonic | NR2F6 | nonsynonymous | STAD|1|395|0.00253,STES|1|395|0.00253 |
| - | chr19 | 17346400 | 17346400 | C | T | exonic | NR2F6 | nonsynonymous | STAD|2|395|0.00506,STES|2|395|0.00506 |
| rs370347405 | chr19 | 17343175 | 17343175 | C | T | exonic | NR2F6 | nonsynonymous | STAD|1|395|0.00253,STES|1|395|0.00253 |
| - | chr19 | 17346354 | 17346354 | G | A | exonic | NR2F6 | synonymous | KIPAN|1|799|0.00125,KIRC|1|451|0.00222 |
| rs372090950 | chr19 | 17343237 | 17343237 | G | A | exonic | NR2F6 | nonsynonymous | STAD|1|395|0.00253,STES|1|395|0.00253 |
| - | chr19 | 17355841 | 17355841 | C | G | exonic | NR2F6 | synonymous | BRCA|1|982|0.00102,CESC|1|194|0.00515 |
| - | chr19 | 17351572 | 17351572 | G | T | exonic | NR2F6 | nonsynonymous | UCEC|1|248|0.00403 |
| - | chr19 | 17343368 | 17343368 | G | A | exonic | NR2F6 | synonymous | ACC|1|90|0.01111 |
| - | chr19 | 17343188 | 17343188 | G | A | exonic | NR2F6 | synonymous | UCEC|1|248|0.00403 |
| - | chr19 | 17343227 | 17343227 | C | A | exonic | NR2F6 | nonsynonymous | COADREAD|1|489|0.00204,READ|1|122|0.00820 |
| - | chr19 | 17343253 | 17343253 | G | A | exonic | NR2F6 | nonsynonymous | STAD|1|395|0.00253,STES|1|395|0.00253,UCEC|1|248|0.00403 |
| - | chr19 | 17343275 | 17343275 | G | A | exonic | NR2F6 | synonymous | BLCA|1|396|0.00253 |
| rs369918989 | chr19 | 17343353 | 17343353 | C | T | exonic | NR2F6 | synonymous | STAD|1|395|0.00253,STES|1|395|0.00253 |
| - | chr19 | 17343214 | 17343214 | C | T | exonic | NR2F6 | nonsynonymous | UCEC|1|248|0.00403 |
| rs757103571 | chr19 | 17351572 | 17351572 | G | A | exonic | NR2F6 | nonsynonymous | SKCM|1|368|0.00272 |
| - | chr19 | 17346329 | 17346329 | C | T | exonic | NR2F6 | nonsynonymous | ESCA|1|185|0.00541 |
| rs761684813 | chr19 | 17343433 | 17343433 | C | T | exonic | NR2F6 | nonsynonymous | PAAD|1|185|0.00541 |
| - | chr19 | 17351535 | 17351535 | G | C | exonic | NR2F6 | nonsynonymous | LIHC|1|373|0.00268 |
| - | chr19 | 17346351 | 17346351 | C | T | exonic | NR2F6 | synonymous | LUAD|1|543|0.00184 |
| rs146497684 | chr19 | 17346441 | 17346441 | A | T | exonic | NR2F6 | synonymous | ACC|1|90|0.01111 |
| rs752642391 | chr19 | 17343236 | 17343236 | C | T | exonic | NR2F6 | synonymous | PRAD|1|499|0.00200 |
| - | chr19 | 17346315 | 17346315 | G | T | exonic | NR2F6 | nonsynonymous | BLCA|1|396|0.00253 |
| - | chr19 | 17351553 | 17351553 | G | A | exonic | NR2F6 | synonymous | BLCA|1|396|0.00253 |
| - | chr19 | 17343235 | 17343235 | G | A | exonic | NR2F6 | nonsynonymous | KIPAN|1|799|0.00125,KIRP|1|282|0.00355 |
| - | chr19 | 17355849 | 17355849 | C | G | exonic | NR2F6 | nonsynonymous | LUSC|1|178|0.00562 |
| - | chr19 | 17343232 | 17343232 | T | C | exonic | NR2F6 | nonsynonymous | LUAD|1|543|0.00184 |
| - | chr19 | 17343360 | 17343360 | A | G | exonic | NR2F6 | nonsynonymous | HNSC|1|512|0.00195 |
| rs200476767 | chr19 | 17351567 | 17351567 | G | A | exonic | NR2F6 | nonsynonymous | UCEC|1|248|0.00403 |
| - | chr19 | 17343311 | 17343311 | C | T | exonic | NR2F6 | synonymous | PRAD|1|499|0.00200 |
| TF_name | Disease_name | Disease_class | Disease_semantic_type | TF_disease_source |
|---|---|---|---|---|
| NR2F6 | Malignant neoplasm of breast | C04;C17 | Neoplastic Process | CTD_human |
| NR2F6 | Endometriosis | C13 | Disease or Syndrome | CTD_human |
| NR2F6 | Endometrioma | C13 | Neoplastic Process | CTD_human |
| NR2F6 | Breast Carcinoma | C04;C17 | Neoplastic Process | CTD_human |
| NR2F6 | Mammary Neoplasms, Human | C04;C17 | Neoplastic Process | CTD_human |
| NR2F6 | Mammary Neoplasms | C04;C17 | Neoplastic Process | CTD_human |
| pathway_ID | pathway_name | pathway_source | gene_number | edge_number |
|---|---|---|---|---|
| pathway0001534 | Nuclear Receptor transcription pathway | reactome | 51 | 284 |
| GO_term_name | GO_term_type | TF_name |
|---|---|---|
| GO_SENSORY_PERCEPTION_OF_TEMPERATURE_STIMULUS | BP | NR2F6 |
| GO_PHOTOPERIODISM | BP | NR2F6 |
| GO_ENTRAINMENT_OF_CIRCADIAN_CLOCK_BY_PHOTOPERIOD | BP | NR2F6 |
| GO_HORMONE_MEDIATED_SIGNALING_PATHWAY | BP | NR2F6 |
| GO_DETECTION_OF_TEMPERATURE_STIMULUS | BP | NR2F6 |
| GO_ENTRAINMENT_OF_CIRCADIAN_CLOCK | BP | NR2F6 |
| GO_DETECTION_OF_ABIOTIC_STIMULUS | BP | NR2F6 |
| GO_DETECTION_OF_TEMPERATURE_STIMULUS_INVOLVED_IN_SENSORY_PERCEPTION | BP | NR2F6 |
| GO_ENHANCER_BINDING | MF | NR2F6 |
| GO_TRANSCRIPTION_FACTOR_ACTIVITY_DIRECT_LIGAND_REGULATED_SEQUENCE_SPECIFIC_DNA_BINDING | MF | NR2F6 |
| GO_STEROID_HORMONE_RECEPTOR_ACTIVITY | MF | NR2F6 |
| GO_RNA_POLYMERASE_II_DISTAL_ENHANCER_SEQUENCE_SPECIFIC_DNA_BINDING | MF | NR2F6 |