Sample ID | Biosample type | Tissue type | Biosample name | TF Frequency |
---|---|---|---|---|
Sample_02_298 | Cell line | Neuroblastoma | CLB-GA | 0.054794520547945 |
Sample_02_300 | Cell line | Neuroblastoma | CLB-PE | 0.1025641025641 |
Sample_02_302 | Cell line | Neuroblastoma | IMR32 | 0.17857142857143 |
Sample_02_319 | Cell line | Neuroblastoma | NB-EBc1 | 0.10982658959538 |
Sample ID | Tissue type | Biosample type | Biosample name |
---|
rsID | Chr | Start | Stop | Ref | Alt | Gene_region | Gene_symble | Effect | TCGA_Occurrence |
---|---|---|---|---|---|---|---|---|---|
- | chr4 | 113435915 | 113435915 | C | T | exonic | NEUROG2 | synonymous | COAD|1|367|0.00272,COADREAD|1|489|0.00204 |
- | chr4 | 113436581 | 113436581 | T | C | exonic | NEUROG2 | synonymous | HNSC|1|512|0.00195 |
rs372471017 | chr4 | 113435863 | 113435863 | C | T | exonic | NEUROG2 | nonsynonymous | STAD|2|395|0.00506,STES|2|395|0.00506 |
rs146017617 | chr4 | 113436014 | 113436014 | G | C | exonic | NEUROG2 | nonsynonymous | UCEC|1|248|0.00403 |
- | chr4 | 113436535 | 113436535 | G | A | exonic | NEUROG2 | synonymous | UCS|1|57|0.01754 |
- | chr4 | 113436339 | 113436339 | C | T | exonic | NEUROG2 | nonsynonymous | COAD|1|367|0.00272,COADREAD|1|489|0.00204 |
- | chr4 | 113436115 | 113436115 | G | C | exonic | NEUROG2 | nonsynonymous | LUSC|1|178|0.00562 |
- | chr4 | 113436263 | 113436263 | G | A | exonic | NEUROG2 | synonymous | STAD|1|395|0.00253,STES|1|395|0.00253 |
- | chr4 | 113436261 | 113436261 | C | T | exonic | NEUROG2 | nonsynonymous | STAD|1|395|0.00253,STES|1|395|0.00253 |
- | chr4 | 113436104 | 113436104 | G | A | exonic | NEUROG2 | synonymous | COAD|1|367|0.00272,COADREAD|1|489|0.00204 |
rs755271672 | chr4 | 113435835 | 113435835 | G | C | exonic | NEUROG2 | nonsynonymous | KIPAN|1|799|0.00125,KIRC|1|451|0.00222 |
- | chr4 | 113436695 | 113436695 | T | C | intronic | NEUROG2 | unknown | STAD|1|395|0.00253,STES|1|395|0.00253 |
- | chr4 | 113436006 | 113436006 | G | T | exonic | NEUROG2 | stopgain | CESC|1|194|0.00515 |
- | chr4 | 113436144 | 113436144 | G | A | exonic | NEUROG2 | nonsynonymous | LUAD|1|543|0.00184 |
- | chr4 | 113435952 | 113435952 | G | A | exonic | NEUROG2 | nonsynonymous | SKCM|1|368|0.00272 |
- | chr4 | 113436008 | 113436008 | G | A | exonic | NEUROG2 | synonymous | HNSC|1|512|0.00195 |
- | chr4 | 113436101 | 113436101 | G | C | exonic | NEUROG2 | synonymous | STAD|1|395|0.00253,STES|1|395|0.00253 |
- | chr4 | 113436004 | 113436004 | G | A | exonic | NEUROG2 | nonsynonymous | LUAD|1|543|0.00184,SKCM|1|368|0.00272 |
- | chr4 | 113436354 | 113436354 | G | A | exonic | NEUROG2 | nonsynonymous | BLCA|1|396|0.00253 |
- | chr4 | 113436007 | 113436007 | A | C | exonic | NEUROG2 | nonsynonymous | LIHC|1|373|0.00268 |
rs747836494 | chr4 | 113435994 | 113435994 | G | A | exonic | NEUROG2 | nonsynonymous | ESCA|1|185|0.00541 |
- | chr4 | 113436146 | 113436146 | C | T | exonic | NEUROG2 | stopgain | GBMLGG|1|820|0.00122,KIPAN|1|799|0.00125,KIRC|1|451|0.00222,LGG|1|530|0.00189 |
rs745619538 | chr4 | 113436164 | 113436164 | G | A | exonic | NEUROG2 | synonymous | COADREAD|1|489|0.00204,READ|1|122|0.00820 |
- | chr4 | 113436223 | 113436223 | C | A | exonic | NEUROG2 | stopgain | CESC|1|194|0.00515 |
- | chr4 | 113436383 | 113436383 | T | C | exonic | NEUROG2 | synonymous | STAD|1|395|0.00253,STES|1|395|0.00253 |
- | chr4 | 113436414 | 113436414 | C | T | exonic | NEUROG2 | nonsynonymous | SKCM|1|368|0.00272 |
rs901474 | chr4 | 113436044 | 113436044 | T | G | exonic | NEUROG2 | synonymous | KICH|1|66|0.01515,KIPAN|1|799|0.00125 |
- | chr4 | 113436154 | 113436154 | A | G | exonic | NEUROG2 | nonsynonymous | LUSC|1|178|0.00562 |
- | chr4 | 113436086 | 113436086 | C | A | exonic | NEUROG2 | synonymous | LUSC|1|178|0.00562 |
- | chr4 | 113436099 | 113436099 | C | - | exonic | NEUROG2 | frameshift | BRCA|1|982|0.00102 |
rs771673824 | chr4 | 113436575 | 113436575 | C | A | exonic | NEUROG2 | synonymous | LUAD|1|543|0.00184 |
- | chr4 | 113436310 | 113436310 | G | T | exonic | NEUROG2 | nonsynonymous | LUAD|4|543|0.00737 |
- | chr4 | 113436358 | 113436358 | G | A | exonic | NEUROG2 | nonsynonymous | SARC|1|247|0.00405 |
- | chr4 | 113436340 | 113436340 | G | T | exonic | NEUROG2 | synonymous | LUAD|1|543|0.00184 |
- | chr4 | 113436204 | 113436204 | G | A | exonic | NEUROG2 | nonsynonymous | STAD|1|395|0.00253,STES|1|395|0.00253 |
- | chr4 | 113435853 | 113435853 | C | T | exonic | NEUROG2 | nonsynonymous | GBMLGG|1|820|0.00122,LGG|1|530|0.00189,STAD|1|395|0.00253,STES|1|395|0.00253 |
- | chr4 | 113436203 | 113436203 | G | C | exonic | NEUROG2 | synonymous | LUAD|1|543|0.00184 |
- | chr4 | 113436287 | 113436287 | C | A | exonic | NEUROG2 | synonymous | LUAD|1|543|0.00184 |
- | chr4 | 113436264 | 113436264 | T | C | exonic | NEUROG2 | nonsynonymous | COAD|1|367|0.00272,COADREAD|1|489|0.00204 |
- | chr4 | 113436257 | 113436257 | C | T | exonic | NEUROG2 | nonsynonymous | GBM|1|290|0.00345,GBMLGG|1|820|0.00122 |
TF_name | Disease_name | Disease_class | Disease_semantic_type | TF_disease_source |
---|
pathway_ID | pathway_name | pathway_source | gene_number | edge_number |
---|---|---|---|---|
pathway0002746 | Hs_Dopaminergic_Neurogenesis_WP2855_87239 | wikipathways | 19 | 37 |
GO_term_name | GO_term_type | TF_name |
---|---|---|
GO_POSITIVE_REGULATION_OF_SEQUENCE_SPECIFIC_DNA_BINDING_TRANSCRIPTION_FACTOR_ACTIVITY | BP | NEUROG2 |
GO_E_BOX_BINDING | MF | NEUROG2 |