TF information

TF name: HOXC5
TF family: Homeobox
Ensembl gene ID: ENSG00000172789
Ensembl protein ID: ENSP00000309336
Entrez gene ID: 3222
Database name Link Database name Link
NCBI Gene: Genecards:
Uniprot: Wikipedia:
Cosmic 3D: Geneontology:
CCLE:

Frequency of HOXC5 in all biosamples
Sample ID Biosample type Tissue type Biosample name TF Frequency
Sample_02_069Cell lineBrainSF2680.17557251908397
Sample_02_296Cell lineNeuroblastomaCLB-BER-Lud0.55623565416985
Sample_02_312Cell lineNeuroblastomaSK-N-BE_2-C0.48404255319149

HOXC5 distribution in samples’ most representative CRC
Sample ID Tissue type Biosample type Biosample name
Sample_02_296NeuroblastomaCell lineCLB-BER-Lud

HOXC5 distribution in all CRCs
Biosample type
Biosample name
Sample ID

Genomic distribution of SEs associated with HOXC5
Download

Mutation of HOXC5
Database name Link
gnomAD: gnomAD
ExAC: ExAC
ICGC:
Database name Link
Cosmic:
Cosmic cell lines:
Depmap:

TCGA somatic mutations and clinical variants of HOXC5

rsID Chr Start Stop Ref Alt Gene_region Gene_symble Effect TCGA_Occurrence
-chr125442729954427299GAexonicHOXC5synonymous SKCM|1|368|0.00272
-chr125442712654427126CAexonicHOXC5nonsynonymous LUAD|1|543|0.00184
-chr125442704754427047CAexonicHOXC5synonymous UCEC|1|248|0.00403
rs752801299chr125442807054428070GAexonicHOXC5nonsynonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204
-chr125442811854428118GCexonicHOXC5nonsynonymous CESC|1|194|0.00515
-chr125442825554428255GAexonicHOXC5nonsynonymous CESC|1|194|0.00515
rs772421092chr125442712354427123CTexonicHOXC5nonsynonymous SKCM|1|368|0.00272
-chr125442728854427288CTexonicHOXC5nonsynonymous STAD|1|395|0.00253,STES|1|395|0.00253
rs777703309chr125442709954427099GAexonicHOXC5nonsynonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204
-chr125442693154426931TGexonicHOXC5nonsynonymous PAAD|1|185|0.00541
-chr125442819254428192TCexonicHOXC5synonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr125442816854428168GTexonicHOXC5nonsynonymous STAD|1|395|0.00253,STES|1|395|0.00253
rs779715231chr125442711554427115ACexonicHOXC5nonsynonymous GBM|1|290|0.00345,GBMLGG|1|820|0.00122,LUAD|1|543|0.00184
-chr125442822654428226AGexonicHOXC5nonsynonymous UCEC|1|248|0.00403
-chr125442701954427019ATexonicHOXC5nonsynonymous SKCM|1|368|0.00272
-chr125442826554428265GCexonicHOXC5nonsynonymous CESC|1|194|0.00515
-chr125442730354427303CAexonicHOXC5nonsynonymous LUSC|1|178|0.00562
-chr125442704554427045AGexonicHOXC5nonsynonymous LUSC|1|178|0.00562
-chr125442817154428171CTexonicHOXC5synonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr125442693354426933CAexonicHOXC5nonsynonymous UCEC|1|248|0.00403
-chr125442705454427054CTexonicHOXC5nonsynonymous SKCM|1|368|0.00272
-chr125442808154428081CAexonicHOXC5synonymous LUSC|1|178|0.00562
-chr125442819054428190AGexonicHOXC5nonsynonymous UCEC|1|248|0.00403
-chr125442695654426956CAexonicHOXC5nonsynonymous SARC|1|247|0.00405
-chr125442714154427141GTexonicHOXC5nonsynonymous BRCA|1|982|0.00102
-chr125442825954428259AGexonicHOXC5nonsynonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr125442717454427174GAexonicHOXC5nonsynonymous SKCM|1|368|0.00272
-chr125442812454428124GTexonicHOXC5stopgain UCEC|1|248|0.00403
-chr125442729154427291GAexonicHOXC5nonsynonymous GBMLGG|1|820|0.00122,LGG|1|530|0.00189
rs781526097chr125442815554428155GAexonicHOXC5nonsynonymous LUAD|1|543|0.00184
-chr125442813154428131ATexonicHOXC5nonsynonymous BLCA|2|396|0.00505
-chr125442710054427100CAexonicHOXC5nonsynonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204
-chr125442809854428098GAexonicHOXC5nonsynonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr125442700254427002GAexonicHOXC5synonymous LUSC|1|178|0.00562
-chr125442712454427124GCexonicHOXC5nonsynonymous BLCA|1|396|0.00253
-chr125442691354426913TCexonicHOXC5nonsynonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204
-chr125442699454426994GAexonicHOXC5nonsynonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr125442822454428224GAexonicHOXC5nonsynonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr125442726754427267GTexonicHOXC5stopgain SKCM|1|368|0.00272

Disease information of HOXC5
TF_name Disease_name Disease_class Disease_semantic_type TF_disease_source

Pathway associated with HOXC5
pathway_ID pathway_name pathway_source gene_number edge_number

Go term information of HOXC5
GO_term_name GO_term_type TF_name
GO_REGULATION_OF_TRANSCRIPTION_FROM_RNA_POLYMERASE_II_PROMOTER BP HOXC5

Survival analysis of HOXC5



Calculate the hazards ratio based on Cox PH Model.
Add the 95% CI as dotted line.

Expression of HOXC5