Cancer CRCdb

TF information

TF name:	GLI2
TF family:	zf-C2H2
Ensembl gene ID:	ENSG00000074047
Ensembl protein ID:	ENSP00000354586, ENSP00000390436
Entrez gene ID:	2736

Database name	Link	Database name	Link
NCBI Gene:		Genecards:
Uniprot:		Wikipedia:
Cosmic 3D:		Geneontology:
CCLE:

Frequency of GLI2 in all biosamples

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Sample ID	Biosample type	Tissue type	Biosample name	TF Frequency
Sample_02_296	Cell line	Neuroblastoma	CLB-BER-Lud	0.32823259372609
Sample_02_300	Cell line	Neuroblastoma	CLB-PE	0.61538461538462
Sample_02_309	Cell line	Neuroblastoma	SJNB6	0.075829383886256
Sample_02_313	Cell line	Neuroblastoma	SK-N-DZ	0.15057915057915

GLI2 distribution in samples’ most representative CRC

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Sample ID	Tissue type	Biosample type	Biosample name
Sample_02_296	Neuroblastoma	Cell line	CLB-BER-Lud
Sample_02_300	Neuroblastoma	Cell line	CLB-PE

GLI2 distribution in all CRCs

Genomic distribution of SEs associated with GLI2

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Mutation of GLI2

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Database name	Link
gnomAD:	gnomAD
ExAC:	ExAC
ICGC:

Database name	Link
Cosmic:
Cosmic cell lines:
Depmap:

TCGA somatic mutations and clinical variants of GLI2

rsID	Chr	Start	Stop	Ref	Alt	Gene_region	Gene_symble	Effect	TCGA_Occurrence
-	chr2	121684974	121684974	A	G	exonic	GLI2	synonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr2	121747727	121747727	G	C	exonic	GLI2	nonsynonymous	HNSC\|1\|512\|0.00195
rs531807595	chr2	121685032	121685032	G	A	exonic	GLI2	nonsynonymous	GBMLGG\|1\|820\|0.00122,LGG\|1\|530\|0.00189
-	chr2	121554929	121554929	G	T	exonic	GLI2	nonsynonymous	LIHC\|1\|373\|0.00268
rs150170739	chr2	121736059	121736059	G	A	exonic	GLI2	nonsynonymous	PAAD\|1\|185\|0.00541,STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr2	121747300	121747300	C	A	exonic	GLI2	stopgain	COADREAD\|1\|489\|0.00204,READ\|1\|122\|0.00820
-	chr2	121740302	121740302	G	A	exonic	GLI2	nonsynonymous	BRCA\|1\|982\|0.00102
rs755043644	chr2	121726332	121726332	G	A	exonic	GLI2	nonsynonymous	PRAD\|1\|499\|0.00200
-	chr2	121743921	121743921	C	T	exonic	GLI2	nonsynonymous	SKCM\|1\|368\|0.00272
rs774865060	chr2	121726308	121726308	C	T	exonic	GLI2	nonsynonymous	BLCA\|1\|396\|0.00253
-	chr2	121748150	121748150	C	T	exonic	GLI2	nonsynonymous	UCEC\|1\|248\|0.00403
-	chr2	121726377	121726377	A	G	exonic	GLI2	nonsynonymous	SKCM\|1\|368\|0.00272
-	chr2	121745795	121745795	G	A	exonic	GLI2	nonsynonymous	SKCM\|1\|368\|0.00272
-	chr2	121728087	121728087	A	C	exonic	GLI2	nonsynonymous	BRCA\|1\|982\|0.00102
-	chr2	121740372	121740372	T	C	exonic	GLI2	synonymous	HNSC\|1\|512\|0.00195
-	chr2	121748070	121748070	G	T	exonic	GLI2	nonsynonymous	GBM\|1\|290\|0.00345,GBMLGG\|1\|820\|0.00122
-	chr2	121746728	121746728	G	A	exonic	GLI2	nonsynonymous	SKCM\|1\|368\|0.00272
-	chr2	121728002	121728002	C	T	exonic	GLI2	synonymous	SKCM\|1\|368\|0.00272
-	chr2	121742273	121742273	T	C	exonic	GLI2	nonsynonymous	ESCA\|2\|185\|0.01081
rs147224778	chr2	121684976	121684976	C	T	exonic	GLI2	nonsynonymous	COAD\|1\|367\|0.00272,COADREAD\|1\|489\|0.00204,OV\|1\|469\|0.00213
-	chr2	121747077	121747077	G	A	exonic	GLI2	nonsynonymous	LIHC\|1\|373\|0.00268
rs200723250	chr2	121554889	121554889	C	T	UTR5	GLI2	unknown	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr2	121726346	121726346	T	C	exonic	GLI2	nonsynonymous	COADREAD\|1\|489\|0.00204,READ\|1\|122\|0.00820
rs755546542	chr2	121708921	121708921	C	T	exonic	GLI2	synonymous	BLCA\|1\|396\|0.00253
-	chr2	121685040	121685040	C	G	exonic	GLI2	nonsynonymous	BRCA\|1\|982\|0.00102
-	chr2	121745876	121745876	G	A	exonic	GLI2	nonsynonymous	SARC\|1\|247\|0.00405
rs779228206	chr2	121554883	121554883	G	A	UTR5	GLI2	unknown	SKCM\|1\|368\|0.00272
-	chr2	121736128	121736128	G	A	exonic	GLI2	nonsynonymous	SKCM\|1\|368\|0.00272
-	chr2	121748220	121748220	A	T	exonic	GLI2	nonsynonymous	PRAD\|1\|499\|0.00200
-	chr2	121746844	121746844	C	T	exonic	GLI2	synonymous	PRAD\|1\|499\|0.00200
-	chr2	121746944	121746944	G	A	exonic	GLI2	nonsynonymous	HNSC\|1\|512\|0.00195
-	chr2	121745883	121745883	T	C	exonic	GLI2	nonsynonymous	LIHC\|1\|373\|0.00268
-	chr2	121684992	121684992	C	T	exonic	GLI2	synonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr2	121747231	121747231	T	C	exonic	GLI2	synonymous	BLCA\|1\|396\|0.00253
-	chr2	121742133	121742133	C	T	exonic	GLI2	synonymous	HNSC\|1\|512\|0.00195
-	chr2	121712840	121712840	G	A	exonic	GLI2	synonymous	SKCM\|1\|368\|0.00272
-	chr2	121726342	121726342	G	A	exonic	GLI2	synonymous	GBM\|1\|290\|0.00345,GBMLGG\|1\|820\|0.00122
-	chr2	121746688	121746688	G	T	exonic	GLI2	synonymous	LUAD\|1\|543\|0.00184
-	chr2	121747900	121747900	G	C	exonic	GLI2	synonymous	BRCA\|1\|982\|0.00102
rs771675078	chr2	121726307	121726307	C	T	exonic	GLI2	nonsynonymous	SKCM\|1\|368\|0.00272
-	chr2	121708840	121708840	C	T	exonic	GLI2	synonymous	KIPAN\|1\|799\|0.00125,KIRC\|1\|451\|0.00222
-	chr2	121747417	121747417	G	A	exonic	GLI2	synonymous	LUAD\|1\|543\|0.00184
rs144803259	chr2	121748158	121748158	C	T	exonic	GLI2	synonymous	SKCM\|1\|368\|0.00272
-	chr2	121726311	121726311	G	A	exonic	GLI2	nonsynonymous	COADREAD\|1\|489\|0.00204,READ\|1\|122\|0.00820
rs762343399	chr2	121746042	121746042	C	T	exonic	GLI2	nonsynonymous	SKCM\|1\|368\|0.00272
-	chr2	121712946	121712946	A	G	exonic	GLI2	nonsynonymous	UCEC\|1\|248\|0.00403
-	chr2	121740416	121740416	C	T	exonic	GLI2	nonsynonymous	PAAD\|1\|185\|0.00541
-	chr2	121744178	121744178	C	A	exonic	GLI2	nonsynonymous	ESCA\|1\|185\|0.00541
rs191591728	chr2	121744183	121744183	G	A	exonic	GLI2	synonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr2	121685024	121685026	CTG	-	exonic	GLI2	nonframeshift	KIPAN\|1\|799\|0.00125,KIRC\|1\|451\|0.00222
rs771760319	chr2	121746888	121746888	C	T	exonic	GLI2	nonsynonymous	COAD\|1\|367\|0.00272,COADREAD\|1\|489\|0.00204
-	chr2	121748125	121748125	C	T	exonic	GLI2	synonymous	SKCM\|1\|368\|0.00272
-	chr2	121742087	121742087	A	G	exonic	GLI2	nonsynonymous	UCEC\|1\|248\|0.00403
-	chr2	121726466	121726466	G	-	exonic	GLI2	frameshift	LUAD\|2\|543\|0.00368
-	chr2	121708839	121708839	G	A	exonic	GLI2	nonsynonymous	OV\|1\|469\|0.00213
-	chr2	121747404	121747404	C	T	exonic	GLI2	nonsynonymous	SKCM\|1\|368\|0.00272
-	chr2	121746728	121746728	G	C	exonic	GLI2	nonsynonymous	ESCA\|1\|185\|0.00541
-	chr2	121555001	121555001	G	T	exonic	GLI2	nonsynonymous	BLCA\|1\|396\|0.00253
-	chr2	121747003	121747003	G	C	exonic	GLI2	synonymous	BLCA\|1\|396\|0.00253
rs149502176	chr2	121712960	121712960	C	A	exonic	GLI2	synonymous	GBMLGG\|1\|820\|0.00122,LGG\|1\|530\|0.00189
-	chr2	121746991	121746991	T	A	exonic	GLI2	synonymous	SKCM\|1\|368\|0.00272
-	chr2	121746685	121746685	C	T	exonic	GLI2	synonymous	PRAD\|1\|499\|0.00200
-	chr2	121747297	121747297	C	T	exonic	GLI2	synonymous	BLCA\|1\|396\|0.00253
-	chr2	121728096	121728096	G	T	exonic	GLI2	nonsynonymous	OV\|1\|469\|0.00213
rs387907277	chr2	121742248	121742248	G	A	exonic	GLI2	nonsynonymous	LUAD\|1\|543\|0.00184
-	chr2	121746916	121746916	G	A	exonic	GLI2	nonsynonymous	GBMLGG\|1\|820\|0.00122,LGG\|1\|530\|0.00189
-	chr2	121747440	121747440	C	T	exonic	GLI2	nonsynonymous	SKCM\|1\|368\|0.00272
-	chr2	121746932	121746932	G	C	exonic	GLI2	nonsynonymous	CESC\|1\|194\|0.00515
rs755093850	chr2	121746597	121746597	C	T	exonic	GLI2	nonsynonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr2	121746742	121746742	G	C	exonic	GLI2	nonsynonymous	LUAD\|1\|543\|0.00184
-	chr2	121746829	121746829	G	A	exonic	GLI2	synonymous	COAD\|1\|367\|0.00272,COADREAD\|1\|489\|0.00204
-	chr2	121747197	121747197	G	A	exonic	GLI2	nonsynonymous	GBM\|1\|290\|0.00345,GBMLGG\|1\|820\|0.00122
-	chr2	121744000	121744000	C	A	exonic	GLI2	synonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr2	121740439	121740439	C	G	exonic	GLI2	nonsynonymous	BLCA\|1\|396\|0.00253
rs769533860	chr2	121746727	121746727	C	T	exonic	GLI2	synonymous	BLCA\|1\|396\|0.00253
-	chr2	121708991	121708991	T	A	exonic	GLI2	nonsynonymous	LUAD\|1\|543\|0.00184
-	chr2	121748187	121748187	G	A	exonic	GLI2	nonsynonymous	SKCM\|1\|368\|0.00272
rs755563767	chr2	121748027	121748027	G	A	exonic	GLI2	nonsynonymous	BRCA\|1\|982\|0.00102
-	chr2	121726472	121726472	C	T	exonic	GLI2	synonymous	BLCA\|1\|396\|0.00253
-	chr2	121745926	121745926	G	A	exonic	GLI2	synonymous	SKCM\|2\|368\|0.00543
-	chr2	121732650	121732650	A	G	exonic	GLI2	nonsynonymous	HNSC\|1\|512\|0.00195
-	chr2	121726354	121726354	C	T	exonic	GLI2	synonymous	SKCM\|1\|368\|0.00272
-	chr2	121748015	121748015	C	A	exonic	GLI2	nonsynonymous	HNSC\|1\|512\|0.00195
rs369761915	chr2	121728104	121728104	G	A	exonic	GLI2	synonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr2	121726325	121726325	C	A	exonic	GLI2	nonsynonymous	LUAD\|1\|543\|0.00184
rs374155310	chr2	121729595	121729595	G	A	exonic	GLI2	nonsynonymous	HNSC\|1\|512\|0.00195
rs571821926	chr2	121746625	121746625	C	T	exonic	GLI2	synonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr2	121744079	121744079	C	T	exonic	GLI2	nonsynonymous	STAD\|2\|395\|0.00506,STES\|2\|395\|0.00506
-	chr2	121747847	121747847	A	G	exonic	GLI2	nonsynonymous	HNSC\|1\|512\|0.00195
rs768259857	chr2	121732661	121732661	C	T	exonic	GLI2	synonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
rs370251398	chr2	121736058	121736058	C	T	exonic	GLI2	nonsynonymous	LUAD\|1\|543\|0.00184
-	chr2	121748112	121748112	C	T	exonic	GLI2	nonsynonymous	SKCM\|1\|368\|0.00272
-	chr2	121747069	121747069	-	A	exonic	GLI2	frameshift	BRCA\|1\|982\|0.00102
-	chr2	121736037	121736037	G	T	exonic	GLI2	stopgain	SKCM\|1\|368\|0.00272
-	chr2	121740317	121740317	C	T	exonic	GLI2	nonsynonymous	SKCM\|1\|368\|0.00272
-	chr2	121747418	121747418	G	T	exonic	GLI2	nonsynonymous	LUAD\|1\|543\|0.00184
rs565831399	chr2	121748045	121748045	G	A	exonic	GLI2	nonsynonymous	COAD\|1\|367\|0.00272,COADREAD\|1\|489\|0.00204
-	chr2	121747935	121747935	G	T	exonic	GLI2	nonsynonymous	OV\|1\|469\|0.00213
-	chr2	121746554	121746554	G	A	exonic	GLI2	nonsynonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr2	121747930	121747930	G	A	exonic	GLI2	synonymous	SKCM\|2\|368\|0.00543
rs766855872	chr2	121743937	121743937	C	T	exonic	GLI2	synonymous	PAAD\|1\|185\|0.00541
-	chr2	121747145	121747145	G	A	exonic	GLI2	nonsynonymous	SKCM\|1\|368\|0.00272
-	chr2	121726405	121726405	C	G	exonic	GLI2	synonymous	LUAD\|3\|543\|0.00552
-	chr2	121747721	121747721	G	A	exonic	GLI2	nonsynonymous	SKCM\|3\|368\|0.00815
-	chr2	121747860	121747860	A	G	exonic	GLI2	nonsynonymous	COAD\|1\|367\|0.00272,COADREAD\|1\|489\|0.00204
rs138680216	chr2	121729540	121729540	C	T	exonic	GLI2	synonymous	COADREAD\|1\|489\|0.00204,READ\|1\|122\|0.00820,UCEC\|1\|248\|0.00403
-	chr2	121732644	121732644	G	T	exonic	GLI2	nonsynonymous	HNSC\|1\|512\|0.00195
-	chr2	121745822	121745822	G	A	exonic	GLI2	nonsynonymous	LIHC\|1\|373\|0.00268,SKCM\|1\|368\|0.00272
rs766031476	chr2	121747030	121747030	T	C	exonic	GLI2	synonymous	LUAD\|1\|543\|0.00184
-	chr2	121740331	121740331	C	T	exonic	GLI2	synonymous	SKCM\|1\|368\|0.00272
-	chr2	121747436	121747436	C	G	exonic	GLI2	nonsynonymous	LUAD\|1\|543\|0.00184
rs147419287	chr2	121712926	121712926	C	T	exonic	GLI2	nonsynonymous	COAD\|1\|367\|0.00272,COADREAD\|1\|489\|0.00204
-	chr2	121729594	121729594	C	T	exonic	GLI2	synonymous	COAD\|1\|367\|0.00272,COADREAD\|1\|489\|0.00204
rs113407742	chr2	121742161	121742161	C	T	exonic	GLI2	nonsynonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr2	121684975	121684975	C	T	exonic	GLI2	nonsynonymous	COAD\|3\|367\|0.00817,COADREAD\|3\|489\|0.00613
rs150858529	chr2	121743981	121743981	C	T	exonic	GLI2	nonsynonymous	BRCA\|1\|982\|0.00102
-	chr2	121747326	121747326	A	G	exonic	GLI2	nonsynonymous	BLCA\|1\|396\|0.00253
-	chr2	121685003	121685003	G	A	exonic	GLI2	nonsynonymous	COAD\|1\|367\|0.00272,COADREAD\|1\|489\|0.00204
-	chr2	121747365	121747365	C	A	exonic	GLI2	nonsynonymous	LUAD\|1\|543\|0.00184
-	chr2	121743920	121743920	C	T	exonic	GLI2	nonsynonymous	SKCM\|1\|368\|0.00272
-	chr2	121736119	121736119	A	G	exonic	GLI2	nonsynonymous	UCS\|1\|57\|0.01754
rs139840265	chr2	121748014	121748014	C	T	exonic	GLI2	synonymous	SKCM\|1\|368\|0.00272
-	chr2	121747939	121747939	C	G	exonic	GLI2	nonsynonymous	BRCA\|1\|982\|0.00102
-	chr2	121726451	121726451	G	A	exonic	GLI2	nonsynonymous	ESCA\|1\|185\|0.00541
rs145169912	chr2	121554926	121554926	C	T	exonic	GLI2	synonymous	UCEC\|1\|248\|0.00403
-	chr2	121746705	121746705	C	T	exonic	GLI2	nonsynonymous	BLCA\|1\|396\|0.00253,STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr2	121746948	121746948	C	-	exonic	GLI2	frameshift	LUAD\|1\|543\|0.00184
rs140392004	chr2	121747054	121747054	G	T	exonic	GLI2	synonymous	GBMLGG\|1\|820\|0.00122,LGG\|1\|530\|0.00189
-	chr2	121742067	121742067	C	T	exonic	GLI2	synonymous	SKCM\|1\|368\|0.00272
-	chr2	121709000	121709000	A	G	exonic	GLI2	nonsynonymous	OV\|1\|469\|0.00213
-	chr2	121745959	121745959	C	T	exonic	GLI2	synonymous	SKCM\|1\|368\|0.00272
-	chr2	121747653	121747653	C	T	exonic	GLI2	nonsynonymous	UCEC\|1\|248\|0.00403
-	chr2	121712909	121712909	C	G	exonic	GLI2	synonymous	BRCA\|1\|982\|0.00102
rs749402521	chr2	121747782	121747782	C	T	exonic	GLI2	nonsynonymous	HNSC\|1\|512\|0.00195
-	chr2	121555036	121555036	C	T	exonic	GLI2	nonsynonymous	LUAD\|1\|543\|0.00184
rs773204708	chr2	121742290	121742290	G	A	exonic	GLI2	nonsynonymous	OV\|1\|469\|0.00213
rs376388820	chr2	121747796	121747796	G	A	exonic	GLI2	nonsynonymous	ACC\|1\|90\|0.01111
-	chr2	121747847	121747847	A	T	exonic	GLI2	nonsynonymous	LIHC\|1\|373\|0.00268
-	chr2	121747283	121747283	C	T	exonic	GLI2	stopgain	BLCA\|1\|396\|0.00253
rs140601980	chr2	121746894	121746894	C	G	exonic	GLI2	nonsynonymous	ESCA\|1\|185\|0.00541
rs748046557	chr2	121745903	121745903	C	T	exonic	GLI2	nonsynonymous	UCS\|1\|57\|0.01754
rs140565050	chr2	121747795	121747795	C	T	exonic	GLI2	synonymous	OV\|1\|469\|0.00213,UCEC\|1\|248\|0.00403
-	chr2	121740398	121740398	A	C	exonic	GLI2	nonsynonymous	CESC\|1\|194\|0.00515
rs200831069	chr2	121745792	121745792	C	T	exonic	GLI2	synonymous	SKCM\|1\|368\|0.00272
rs267598856	chr2	121747809	121747809	C	T	exonic	GLI2	nonsynonymous	UCEC\|1\|248\|0.00403
-	chr2	121728127	121728127	A	G	exonic	GLI2	nonsynonymous	HNSC\|1\|512\|0.00195
-	chr2	121747427	121747427	C	G	exonic	GLI2	nonsynonymous	HNSC\|1\|512\|0.00195
-	chr2	121747767	121747767	C	T	exonic	GLI2	nonsynonymous	KIPAN\|1\|799\|0.00125,KIRC\|1\|451\|0.00222,STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr2	121747580	121747580	G	A	exonic	GLI2	nonsynonymous	LUAD\|1\|543\|0.00184
-	chr2	121743854	121743854	C	A	exonic	GLI2	nonsynonymous	LUAD\|1\|543\|0.00184
rs199931941	chr2	121729565	121729565	G	A	exonic	GLI2	nonsynonymous	BRCA\|1\|982\|0.00102
rs141574408	chr2	121712924	121712924	C	T	exonic	GLI2	synonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr2	121726310	121726310	C	T	exonic	GLI2	nonsynonymous	LIHC\|1\|373\|0.00268
rs138556334	chr2	121726385	121726385	C	T	exonic	GLI2	nonsynonymous	LUAD\|1\|543\|0.00184
rs13427953	chr2	121732662	121732662	G	A	exonic	GLI2	nonsynonymous	SKCM\|1\|368\|0.00272
-	chr2	121740439	121740439	C	T	exonic	GLI2	nonsynonymous	SKCM\|1\|368\|0.00272,STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr2	121747574	121747574	G	A	exonic	GLI2	nonsynonymous	BLCA\|1\|396\|0.00253
rs748827715	chr2	121708927	121708927	C	G	exonic	GLI2	stopgain	BLCA\|1\|396\|0.00253
-	chr2	121746901	121746901	G	A	exonic	GLI2	synonymous	SKCM\|1\|368\|0.00272
-	chr2	121742294	121742294	G	C	exonic	GLI2	nonsynonymous	LUAD\|1\|543\|0.00184
rs183782085	chr2	121743900	121743900	C	T	exonic	GLI2	nonsynonymous	UCEC\|1\|248\|0.00403
-	chr2	121747363	121747363	C	G	exonic	GLI2	nonsynonymous	BLCA\|1\|396\|0.00253
rs781740772	chr2	121708924	121708924	G	A	exonic	GLI2	synonymous	UCEC\|1\|248\|0.00403
-	chr2	121747649	121747649	C	G	exonic	GLI2	nonsynonymous	LUSC\|1\|178\|0.00562
-	chr2	121748105	121748105	C	T	exonic	GLI2	stopgain	LUAD\|1\|543\|0.00184
-	chr2	121708942	121708942	G	-	exonic	GLI2	frameshift	BLCA\|1\|396\|0.00253
-	chr2	121726386	121726386	G	A	exonic	GLI2	nonsynonymous	CESC\|1\|194\|0.00515
-	chr2	121746587	121746587	G	A	exonic	GLI2	nonsynonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr2	121747166	121747166	C	T	exonic	GLI2	stopgain	COAD\|1\|367\|0.00272,COADREAD\|1\|489\|0.00204
-	chr2	121746841	121746841	G	A	exonic	GLI2	synonymous	SKCM\|1\|368\|0.00272
-	chr2	121747764	121747764	G	T	exonic	GLI2	nonsynonymous	LIHC\|1\|373\|0.00268
-	chr2	121747078	121747078	G	T	exonic	GLI2	synonymous	LUAD\|1\|543\|0.00184
-	chr2	121554994	121554994	C	G	exonic	GLI2	nonsynonymous	BLCA\|1\|396\|0.00253
-	chr2	121736090	121736090	C	A	exonic	GLI2	synonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr2	121748012	121748012	C	T	exonic	GLI2	nonsynonymous	SKCM\|1\|368\|0.00272
-	chr2	121554972	121554972	C	T	exonic	GLI2	nonsynonymous	SKCM\|1\|368\|0.00272
-	chr2	121744159	121744159	G	A	exonic	GLI2	synonymous	SKCM\|1\|368\|0.00272
-	chr2	121746735	121746735	C	G	exonic	GLI2	nonsynonymous	LUSC\|1\|178\|0.00562
rs202203798	chr2	121748185	121748185	C	T	exonic	GLI2	synonymous	SKCM\|1\|368\|0.00272
-	chr2	121712859	121712859	C	T	exonic	GLI2	nonsynonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
rs773976966	chr2	121744055	121744055	C	T	exonic	GLI2	nonsynonymous	ACC\|1\|90\|0.01111,PAAD\|1\|185\|0.00541
rs138987487	chr2	121748118	121748118	G	A	exonic	GLI2	nonsynonymous	THCA\|2\|504\|0.00397
-	chr2	121555009	121555009	C	T	exonic	GLI2	nonsynonymous	UCEC\|1\|248\|0.00403
rs540240518	chr2	121708835	121708835	G	A	exonic	GLI2	nonsynonymous	PRAD\|2\|499\|0.00401,THCA\|2\|504\|0.00397
-	chr2	121746958	121746958	C	G	exonic	GLI2	synonymous	KIPAN\|1\|799\|0.00125,KIRP\|1\|282\|0.00355
-	chr2	121746766	121746766	C	A	exonic	GLI2	synonymous	COAD\|1\|367\|0.00272,COADREAD\|1\|489\|0.00204
rs369649251	chr2	121708959	121708959	C	A	exonic	GLI2	nonsynonymous	CESC\|1\|194\|0.00515
-	chr2	121732608	121732608	G	T	exonic	GLI2	stopgain	CHOL\|1\|35\|0.02857
-	chr2	121708823	121708823	C	T	exonic	GLI2	nonsynonymous	SKCM\|2\|368\|0.00543
-	chr2	121708821	121708821	C	A	exonic	GLI2	nonsynonymous	LUAD\|1\|543\|0.00184
-	chr2	121748159	121748159	C	T	exonic	GLI2	nonsynonymous	SKCM\|1\|368\|0.00272
-	chr2	121555001	121555001	G	C	exonic	GLI2	nonsynonymous	LUAD\|1\|543\|0.00184
-	chr2	121685033	121685033	G	A	exonic	GLI2	nonsynonymous	SKCM\|1\|368\|0.00272
rs768192957	chr2	121726367	121726367	G	A	exonic	GLI2	nonsynonymous	LIHC\|1\|373\|0.00268
rs200471311	chr2	121684977	121684977	G	A	exonic	GLI2	synonymous	COAD\|2\|367\|0.00545,COADREAD\|2\|489\|0.00409
-	chr2	121746816	121746816	G	T	exonic	GLI2	nonsynonymous	LUAD\|1\|543\|0.00184
-	chr2	121708838	121708838	A	G	exonic	GLI2	nonsynonymous	COAD\|2\|367\|0.00545,COADREAD\|2\|489\|0.00409
rs867533231	chr2	121747898	121747898	C	T	exonic	GLI2	nonsynonymous	HNSC\|1\|512\|0.00195
rs200080112	chr2	121747635	121747635	G	A	exonic	GLI2	nonsynonymous	LUAD\|1\|543\|0.00184
-	chr2	121746949	121746949	C	T	exonic	GLI2	synonymous	PRAD\|1\|499\|0.00200
-	chr2	121726426	121726426	C	G	exonic	GLI2	nonsynonymous	BRCA\|1\|982\|0.00102
-	chr2	121732522	121732522	C	T	exonic	GLI2	nonsynonymous	SKCM\|1\|368\|0.00272
rs200999705	chr2	121746950	121746950	G	A	exonic	GLI2	nonsynonymous	HNSC\|1\|512\|0.00195
-	chr2	121685022	121685022	T	A	exonic	GLI2	nonsynonymous	SKCM\|1\|368\|0.00272
rs544791528	chr2	121740294	121740294	C	T	exonic	GLI2	synonymous	COAD\|2\|367\|0.00545,COADREAD\|2\|489\|0.00409,UCEC\|1\|248\|0.00403
-	chr2	121744096	121744096	G	-	exonic	GLI2	frameshift	GBM\|1\|290\|0.00345,GBMLGG\|1\|820\|0.00122
-	chr2	121746146	121746146	C	T	exonic	GLI2	stopgain	LIHC\|1\|373\|0.00268
-	chr2	121685040	121685040	C	A	exonic	GLI2	nonsynonymous	LUSC\|1\|178\|0.00562
-	chr2	121744029	121744029	C	T	exonic	GLI2	nonsynonymous	UCEC\|1\|248\|0.00403
-	chr2	121742197	121742197	G	A	exonic	GLI2	nonsynonymous	BLCA\|1\|396\|0.00253
-	chr2	121745998	121745998	C	T	exonic	GLI2	synonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
rs760234579	chr2	121743988	121743988	G	A	exonic	GLI2	synonymous	SKCM\|1\|368\|0.00272
-	chr2	121743964	121743964	G	T	exonic	GLI2	synonymous	LIHC\|1\|373\|0.00268
-	chr2	121726336	121726336	G	T	exonic	GLI2	nonsynonymous	GBMLGG\|1\|820\|0.00122,LGG\|1\|530\|0.00189
rs769916555	chr2	121748215	121748215	C	T	exonic	GLI2	synonymous	HNSC\|1\|512\|0.00195
-	chr2	121748151	121748151	C	G	exonic	GLI2	nonsynonymous	KIPAN\|1\|799\|0.00125,KIRC\|1\|451\|0.00222
rs145779352	chr2	121726296	121726296	G	A	exonic	GLI2	nonsynonymous	BLCA\|2\|396\|0.00505
rs200901345	chr2	121726411	121726411	G	T	exonic	GLI2	synonymous	LUAD\|1\|543\|0.00184
rs200034506	chr2	121747071	121747071	G	A	exonic	GLI2	nonsynonymous	BRCA\|1\|982\|0.00102
-	chr2	121732616	121732616	C	T	exonic	GLI2	synonymous	LUAD\|1\|543\|0.00184
-	chr2	121748242	121748242	G	A	exonic	GLI2	nonsynonymous	SKCM\|1\|368\|0.00272
-	chr2	121747600	121747600	G	T	exonic	GLI2	nonsynonymous	LUAD\|1\|543\|0.00184
rs776509889	chr2	121742187	121742187	G	A	exonic	GLI2	synonymous	PAAD\|1\|185\|0.00541
-	chr2	121726437	121726437	G	A	exonic	GLI2	nonsynonymous	COAD\|1\|367\|0.00272,COADREAD\|1\|489\|0.00204
-	chr2	121744054	121744054	G	A	exonic	GLI2	synonymous	BLCA\|1\|396\|0.00253
-	chr2	121744024	121744024	G	C	exonic	GLI2	synonymous	LUAD\|1\|543\|0.00184
-	chr2	121748027	121748030	GATG	-	exonic	GLI2	frameshift	HNSC\|1\|512\|0.00195
rs13008360	chr2	121742307	121742307	C	T	exonic	GLI2	synonymous	DLBC\|1\|48\|0.02083
rs768557650	chr2	121742146	121742146	G	A	exonic	GLI2	nonsynonymous	BLCA\|1\|396\|0.00253,COAD\|1\|367\|0.00272,COADREAD\|1\|489\|0.00204,SKCM\|1\|368\|0.00272,STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
rs751614251	chr2	121726331	121726331	C	T	exonic	GLI2	nonsynonymous	COAD\|1\|367\|0.00272,COADREAD\|1\|489\|0.00204
-	chr2	121747560	121747560	G	T	exonic	GLI2	nonsynonymous	LUAD\|2\|543\|0.00368
rs114259687	chr2	121743883	121743883	G	A	exonic	GLI2	synonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr2	121740367	121740367	C	T	exonic	GLI2	nonsynonymous	UCEC\|1\|248\|0.00403
-	chr2	121728133	121728133	C	T	exonic	GLI2	nonsynonymous	LUAD\|1\|543\|0.00184
-	chr2	121747852	121747852	C	T	exonic	GLI2	synonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
rs372206751	chr2	121744156	121744156	G	A	exonic	GLI2	synonymous	COAD\|1\|367\|0.00272,COADREAD\|1\|489\|0.00204
-	chr2	121742109	121742109	G	A	exonic	GLI2	synonymous	SKCM\|1\|368\|0.00272
rs777362312	chr2	121743872	121743872	G	A	exonic	GLI2	nonsynonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
rs769099247	chr2	121747129	121747129	C	T	exonic	GLI2	synonymous	SKCM\|1\|368\|0.00272
rs369835105	chr2	121744182	121744182	C	T	exonic	GLI2	nonsynonymous	CESC\|2\|194\|0.01031
-	chr2	121726395	121726395	G	A	exonic	GLI2	nonsynonymous	PAAD\|1\|185\|0.00541
-	chr2	121708834	121708834	C	G	exonic	GLI2	nonsynonymous	BRCA\|1\|982\|0.00102
-	chr2	121708875	121708875	C	-	exonic	GLI2	frameshift	BRCA\|1\|982\|0.00102
-	chr2	121684976	121684976	C	A	exonic	GLI2	nonsynonymous	COAD\|3\|367\|0.00817,COADREAD\|3\|489\|0.00613
-	chr2	121708906	121708906	C	T	exonic	GLI2	synonymous	LUSC\|1\|178\|0.00562
-	chr2	121747481	121747481	T	A	exonic	GLI2	nonsynonymous	LIHC\|1\|373\|0.00268
rs756394134	chr2	121746682	121746682	C	T	exonic	GLI2	synonymous	COAD\|1\|367\|0.00272,COADREAD\|1\|489\|0.00204
rs121917708	chr2	121736076	121736076	C	T	exonic	GLI2	nonsynonymous	LIHC\|1\|373\|0.00268
-	chr2	121742291	121742291	T	C	exonic	GLI2	nonsynonymous	COADREAD\|1\|489\|0.00204,READ\|1\|122\|0.00820
-	chr2	121740365	121740365	A	C	exonic	GLI2	nonsynonymous	COADREAD\|1\|489\|0.00204,READ\|1\|122\|0.00820
-	chr2	121732626	121732626	A	C	exonic	GLI2	nonsynonymous	OV\|1\|469\|0.00213
-	chr2	121728140	121728140	C	T	exonic	GLI2	synonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr2	121742237	121742237	C	T	exonic	GLI2	nonsynonymous	SKCM\|1\|368\|0.00272
-	chr2	121747275	121747275	C	T	exonic	GLI2	nonsynonymous	SKCM\|1\|368\|0.00272
rs529357824	chr2	121742241	121742241	G	A	exonic	GLI2	synonymous	SKCM\|1\|368\|0.00272
-	chr2	121742150	121742150	C	-	exonic	GLI2	frameshift	LUAD\|1\|543\|0.00184
rs748827715	chr2	121708927	121708927	C	T	exonic	GLI2	synonymous	BRCA\|1\|982\|0.00102,UCEC\|1\|248\|0.00403
-	chr2	121745912	121745912	A	G	exonic	GLI2	nonsynonymous	THYM\|1\|123\|0.00813
-	chr2	121747471	121747471	C	G	exonic	GLI2	nonsynonymous	COAD\|1\|367\|0.00272,COADREAD\|1\|489\|0.00204
-	chr2	121747495	121747495	G	C	exonic	GLI2	nonsynonymous	DLBC\|1\|48\|0.02083
-	chr2	121684941	121684941	G	A	exonic	GLI2	synonymous	COAD\|1\|367\|0.00272,COADREAD\|1\|489\|0.00204
-	chr2	121745787	121745787	C	T	exonic	GLI2	nonsynonymous	SKCM\|1\|368\|0.00272
-	chr2	121748132	121748132	C	T	exonic	GLI2	stopgain	UVM\|1\|80\|0.01250
-	chr2	121736047	121736047	A	G	exonic	GLI2	nonsynonymous	COADREAD\|1\|489\|0.00204,READ\|1\|122\|0.00820
-	chr2	121708914	121708914	C	-	exonic	GLI2	frameshift	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
rs143139718	chr2	121708892	121708892	C	T	exonic	GLI2	nonsynonymous	SKCM\|1\|368\|0.00272
-	chr2	121732624	121732624	A	-	exonic	GLI2	frameshift	OV\|1\|469\|0.00213
rs370677655	chr2	121729541	121729541	G	A	exonic	GLI2	nonsynonymous	THCA\|1\|504\|0.00198
-	chr2	121736031	121736031	C	T	exonic	GLI2	nonsynonymous	SKCM\|1\|368\|0.00272
-	chr2	121708820	121708820	C	-	exonic	GLI2	frameshift	DLBC\|1\|48\|0.02083
rs745550412	chr2	121748046	121748046	G	A	exonic	GLI2	nonsynonymous	OV\|1\|469\|0.00213
rs367813164	chr2	121748026	121748026	C	T	exonic	GLI2	synonymous	COAD\|1\|367\|0.00272,COADREAD\|1\|489\|0.00204
-	chr2	121732619	121732619	C	T	exonic	GLI2	synonymous	UCEC\|1\|248\|0.00403
-	chr2	121747346	121747346	A	G	exonic	GLI2	nonsynonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr2	121554950	121554950	G	T	exonic	GLI2	synonymous	LUAD\|1\|543\|0.00184
rs780961532	chr2	121712857	121712857	G	A	exonic	GLI2	nonsynonymous	SKCM\|1\|368\|0.00272
-	chr2	121744020	121744020	C	T	exonic	GLI2	nonsynonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr2	121742113	121742113	C	A	exonic	GLI2	nonsynonymous	LUSC\|1\|178\|0.00562
-	chr2	121708923	121708923	C	A	exonic	GLI2	nonsynonymous	LUAD\|1\|543\|0.00184
-	chr2	121743959	121743959	C	-	exonic	GLI2	frameshift	HNSC\|1\|512\|0.00195
rs762818312	chr2	121746665	121746665	G	A	exonic	GLI2	nonsynonymous	SKCM\|3\|368\|0.00815
-	chr2	121747438	121747438	C	T	exonic	GLI2	synonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr2	121740413	121740413	C	T	exonic	GLI2	nonsynonymous	BLCA\|2\|396\|0.00505
-	chr2	121684939	121684939	C	T	exonic	GLI2	nonsynonymous	UCEC\|1\|248\|0.00403
-	chr2	121740432	121740432	C	G	exonic	GLI2	nonsynonymous	HNSC\|1\|512\|0.00195
rs370333257	chr2	121726317	121726317	C	T	exonic	GLI2	nonsynonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr2	121684944	121684944	G	A	exonic	GLI2	synonymous	GBMLGG\|1\|820\|0.00122,LGG\|1\|530\|0.00189
-	chr2	121736046	121736046	G	C	exonic	GLI2	nonsynonymous	OV\|1\|469\|0.00213
rs145778937	chr2	121555028	121555028	G	A	exonic	GLI2	synonymous	UCEC\|1\|248\|0.00403
-	chr2	121747944	121747944	C	T	exonic	GLI2	nonsynonymous	SKCM\|1\|368\|0.00272
-	chr2	121747788	121747788	C	T	exonic	GLI2	nonsynonymous	BRCA\|1\|982\|0.00102
-	chr2	121747944	121747944	C	A	exonic	GLI2	nonsynonymous	CESC\|1\|194\|0.00515
-	chr2	121742107	121742107	C	T	exonic	GLI2	nonsynonymous	PAAD\|1\|185\|0.00541
-	chr2	121555035	121555035	G	A	exonic	GLI2	nonsynonymous	HNSC\|1\|512\|0.00195
-	chr2	121732502	121732502	C	A	exonic	GLI2	synonymous	UCS\|1\|57\|0.01754
-	chr2	121745873	121745873	G	A	exonic	GLI2	nonsynonymous	SKCM\|1\|368\|0.00272
-	chr2	121732575	121732575	G	T	exonic	GLI2	nonsynonymous	SKCM\|1\|368\|0.00272
-	chr2	121747040	121747040	C	A	exonic	GLI2	nonsynonymous	LUAD\|1\|543\|0.00184
rs770059172	chr2	121746917	121746917	C	T	exonic	GLI2	nonsynonymous	GBMLGG\|1\|820\|0.00122,LGG\|1\|530\|0.00189
-	chr2	121740422	121740422	G	A	exonic	GLI2	nonsynonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr2	121746677	121746677	C	T	exonic	GLI2	nonsynonymous	SKCM\|1\|368\|0.00272
rs141573066	chr2	121748117	121748117	C	T	exonic	GLI2	nonsynonymous	COAD\|1\|367\|0.00272,COADREAD\|1\|489\|0.00204
rs373445921	chr2	121747789	121747789	G	A	exonic	GLI2	synonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr2	121747777	121747777	C	T	exonic	GLI2	synonymous	SKCM\|1\|368\|0.00272
-	chr2	121708851	121708851	C	T	exonic	GLI2	nonsynonymous	SKCM\|1\|368\|0.00272
-	chr2	121747109	121747109	C	T	exonic	GLI2	nonsynonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
rs61732852	chr2	121742124	121742124	G	A	exonic	GLI2	synonymous	DLBC\|2\|48\|0.04167
-	chr2	121747580	121747580	G	T	exonic	GLI2	nonsynonymous	LUAD\|1\|543\|0.00184
-	chr2	121746010	121746010	C	T	exonic	GLI2	synonymous	SKCM\|1\|368\|0.00272
-	chr2	121708950	121708950	A	T	exonic	GLI2	nonsynonymous	LUAD\|1\|543\|0.00184
rs201287742	chr2	121712927	121712927	G	A	exonic	GLI2	synonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr2	121744126	121744126	C	T	exonic	GLI2	synonymous	SKCM\|1\|368\|0.00272
-	chr2	121732608	121732608	G	C	exonic	GLI2	nonsynonymous	BLCA\|1\|396\|0.00253
rs202141899	chr2	121712934	121712934	G	A	exonic	GLI2	nonsynonymous	SKCM\|1\|368\|0.00272
rs752860949	chr2	121744085	121744085	G	A	exonic	GLI2	nonsynonymous	LUSC\|1\|178\|0.00562
-	chr2	121747932	121747932	A	G	exonic	GLI2	nonsynonymous	COAD\|1\|367\|0.00272,COADREAD\|1\|489\|0.00204
-	chr2	121726459	121726459	T	C	exonic	GLI2	synonymous	SKCM\|1\|368\|0.00272
rs749578390	chr2	121746631	121746631	G	A	exonic	GLI2	synonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr2	121742131	121742131	G	T	exonic	GLI2	nonsynonymous	KIPAN\|1\|799\|0.00125,KIRC\|1\|451\|0.00222
rs752220206	chr2	121747564	121747564	G	A	exonic	GLI2	synonymous	BLCA\|1\|396\|0.00253
rs764657013	chr2	121745958	121745958	C	T	exonic	GLI2	nonsynonymous	SKCM\|1\|368\|0.00272
-	chr2	121747867	121747867	C	T	exonic	GLI2	synonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
rs751984787	chr2	121736099	121736099	G	A	exonic	GLI2	synonymous	PAAD\|1\|185\|0.00541
-	chr2	121747836	121747836	G	A	exonic	GLI2	nonsynonymous	SKCM\|1\|368\|0.00272
rs531891558	chr2	121743871	121743871	C	T	exonic	GLI2	synonymous	LUAD\|1\|543\|0.00184
rs143388073	chr2	121747768	121747768	G	A	exonic	GLI2	synonymous	PAAD\|1\|185\|0.00541
rs140711756	chr2	121708912	121708912	C	T	exonic	GLI2	synonymous	DLBC\|1\|48\|0.02083
rs773996121	chr2	121747955	121747955	C	T	exonic	GLI2	nonsynonymous	COAD\|1\|367\|0.00272,COADREAD\|1\|489\|0.00204
rs557121635	chr2	121746706	121746706	G	A	exonic	GLI2	synonymous	COADREAD\|1\|489\|0.00204,READ\|1\|122\|0.00820
-	chr2	121745856	121745856	C	T	exonic	GLI2	nonsynonymous	SKCM\|1\|368\|0.00272

Disease information of GLI2

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TF_name	Disease_name	Disease_class	Disease_semantic_type	TF_disease_source
GLI2	Alcoholic Intoxication, Chronic	C25;F03	Mental or Behavioral Dysfunction	PSYGENET
GLI2	Basal Cell Nevus Syndrome	C04;C05;C07;C16	Neoplastic Process	CTD_human
GLI2	Malignant neoplasm of skin	C04;C17	Neoplastic Process	CTD_human
GLI2	Basal cell carcinoma	C04	Neoplastic Process	CTD_human
GLI2	Acute Promyelocytic Leukemia	C04	Neoplastic Process	CTD_human
GLI2	Osteogenesis Imperfecta	C05;C16;C17	Congenital Abnormality; Disease or Syndrome	GENOMICS_ENGLAND
GLI2	Disorders of Sex Development	C12;C13;C16;C19	Congenital Abnormality	GENOMICS_ENGLAND
GLI2	Skin Neoplasms	C04;C17	Neoplastic Process	CTD_human
GLI2	Arhinencephaly	C05;C10;C16	Congenital Abnormality	CTD_human
GLI2	Holoprosencephaly	C05;C10;C16	Congenital Abnormality	CTD_human;GENOMICS_ENGLAND
GLI2	Polydactyly	C05;C16	Congenital Abnormality	GENOMICS_ENGLAND
GLI2	Gastrointestinal Stromal Tumors	C04;C06	Neoplastic Process	CTD_human
GLI2	Idiopathic hypogonadotropic hypogonadism	C19	Disease or Syndrome	GENOMICS_ENGLAND
GLI2	Lobar Holoprosencephaly	C05;C10;C16	Congenital Abnormality	CTD_human;ORPHANET
GLI2	Alobar Holoprosencephaly	C05;C10;C16	Congenital Abnormality	CTD_human;ORPHANET
GLI2	Semilobar Holoprosencephaly	C05;C10;C16	Congenital Abnormality	CTD_human;ORPHANET
GLI2	Pigmented Basal Cell Carcinoma	C04	Neoplastic Process	CTD_human
GLI2	PITUITARY ANOMALIES WITH HOLOPROSENCEPHALY-LIKE FEATURES (disorder)	C05;C10;C16;C19	Disease or Syndrome	CTD_human;UNIPROT
GLI2	Facial Dysmorphism with Multiple Malformations	C05;C10;C16;C23	Disease or Syndrome	CTD_human
GLI2	Pituitary Hormone Deficiency, Combined, 1	C16;C19;C23	Disease or Syndrome	ORPHANET
GLI2	Gastrointestinal Stromal Sarcoma	C04;C06	Neoplastic Process	CTD_human
GLI2	Intellectual Disability	C10;C23;F01;F03	Mental or Behavioral Dysfunction	GENOMICS_ENGLAND
GLI2	CULLER-JONES SYNDROME		Disease or Syndrome	CTD_human;ORPHANET;UNIPROT

Pathway associated with GLI2

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pathway_ID	pathway_name	pathway_source	gene_number	edge_number
pathway0000428	Ci/Gli processing signaling ( Hedgehog signaling pathway )	inoh	17	76
pathway0000579	Degradation of GLI2 by the proteasome	reactome	59	1505
pathway0000907	GLI proteins bind promoters of Hh responsive genes to promote transcription	reactome	7	15
pathway0000992	Hedgehog off state	reactome	43	309
pathway0000993	Hedgehog on state	reactome	72	1642
pathway0000994	Hedgehog	netpath	39	177
pathway0000996	Hedgehog signaling events mediated by Gli proteins	pid	49	297
pathway0002041	Signaling events mediated by the Hedgehog family	pid	24	77
pathway0002475	Signaling without Hh ( Hedgehog signaling pathway )	inoh	7	20
pathway0002590	Hedgehog signaling pathway	kegg	53	285
pathway0002656	Pathways in cancer	kegg	321	8293
pathway0002664	Basal cell carcinoma	kegg	51	551

Go term information of GLI2

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GO_term_name	GO_term_type	TF_name
GO_EMBRYO_DEVELOPMENT_ENDING_IN_BIRTH_OR_EGG_HATCHING	BP	GLI2
GO_MAMMARY_GLAND_MORPHOGENESIS	BP	GLI2
GO_CELLULAR_RESPONSE_TO_VIRUS	BP	GLI2
GO_GLAND_MORPHOGENESIS	BP	GLI2
GO_POSITIVE_REGULATION_OF_HEMOPOIESIS	BP	GLI2
GO_PROSTATE_GLAND_MORPHOGENESIS	BP	GLI2
GO_EMBRYONIC_DIGIT_MORPHOGENESIS	BP	GLI2
GO_MAMMARY_GLAND_EPITHELIUM_DEVELOPMENT	BP	GLI2
GO_TISSUE_MORPHOGENESIS	BP	GLI2
GO_CEREBELLAR_CORTEX_MORPHOGENESIS	BP	GLI2
GO_PITUITARY_GLAND_DEVELOPMENT	BP	GLI2
GO_SKELETAL_SYSTEM_DEVELOPMENT	BP	GLI2
GO_POSITIVE_REGULATION_OF_THYMOCYTE_AGGREGATION	BP	GLI2
GO_VENTRAL_SPINAL_CORD_INTERNEURON_SPECIFICATION	BP	GLI2
GO_MORPHOGENESIS_OF_EMBRYONIC_EPITHELIUM	BP	GLI2
GO_CELL_DIFFERENTIATION_IN_SPINAL_CORD	BP	GLI2
GO_DORSAL_VENTRAL_PATTERN_FORMATION	BP	GLI2
GO_SPINAL_CORD_MOTOR_NEURON_DIFFERENTIATION	BP	GLI2
GO_VENTRAL_SPINAL_CORD_DEVELOPMENT	BP	GLI2
GO_DIGESTIVE_SYSTEM_DEVELOPMENT	BP	GLI2
GO_EPIDERMAL_CELL_DIFFERENTIATION	BP	GLI2
GO_ORGAN_FORMATION	BP	GLI2
GO_PROXIMAL_DISTAL_PATTERN_FORMATION	BP	GLI2
GO_POSITIVE_REGULATION_OF_LEUKOCYTE_DIFFERENTIATION	BP	GLI2
GO_ANATOMICAL_STRUCTURE_REGRESSION	BP	GLI2
GO_SPINAL_CORD_MOTOR_NEURON_CELL_FATE_SPECIFICATION	BP	GLI2
GO_REGULATION_OF_THYMOCYTE_AGGREGATION	BP	GLI2
GO_MORPHOGENESIS_OF_AN_EPITHELIAL_FOLD	BP	GLI2
GO_IN_UTERO_EMBRYONIC_DEVELOPMENT	BP	GLI2
GO_CEREBELLAR_CORTEX_DEVELOPMENT	BP	GLI2
GO_ANTERIOR_POSTERIOR_PATTERN_SPECIFICATION	BP	GLI2
GO_EMBRYONIC_ORGAN_MORPHOGENESIS	BP	GLI2
GO_EMBRYONIC_DIGESTIVE_TRACT_DEVELOPMENT	BP	GLI2
GO_CHONDROCYTE_DIFFERENTIATION	BP	GLI2
GO_NEURON_FATE_SPECIFICATION	BP	GLI2
GO_DIGESTIVE_TRACT_MORPHOGENESIS	BP	GLI2
GO_RESPONSE_TO_ORGANIC_CYCLIC_COMPOUND	BP	GLI2
GO_REGULATION_OF_CHONDROCYTE_DIFFERENTIATION	BP	GLI2
GO_POSITIVE_REGULATION_OF_NEURAL_PRECURSOR_CELL_PROLIFERATION	BP	GLI2
GO_SPINAL_CORD_PATTERNING	BP	GLI2
GO_NEGATIVE_REGULATION_OF_CARTILAGE_DEVELOPMENT	BP	GLI2
GO_REGULATION_OF_LYMPHOCYTE_DIFFERENTIATION	BP	GLI2
GO_VENTRAL_SPINAL_CORD_INTERNEURON_DIFFERENTIATION	BP	GLI2
GO_CENTRAL_NERVOUS_SYSTEM_PROJECTION_NEURON_AXONOGENESIS	BP	GLI2
GO_DORSAL_VENTRAL_NEURAL_TUBE_PATTERNING	BP	GLI2
GO_NEGATIVE_REGULATION_OF_CELL_DEATH	BP	GLI2
GO_REGULATION_OF_SMOOTHENED_SIGNALING_PATHWAY	BP	GLI2
GO_DIENCEPHALON_DEVELOPMENT	BP	GLI2
GO_CELL_FATE_COMMITMENT	BP	GLI2
GO_COCHLEA_DEVELOPMENT	BP	GLI2
GO_HINDBRAIN_MORPHOGENESIS	BP	GLI2
GO_SMOOTHENED_SIGNALING_PATHWAY	BP	GLI2
GO_DEVELOPMENTAL_PROCESS_INVOLVED_IN_REPRODUCTION	BP	GLI2
GO_CONNECTIVE_TISSUE_DEVELOPMENT	BP	GLI2
GO_ODONTOGENESIS_OF_DENTIN_CONTAINING_TOOTH	BP	GLI2
GO_COCHLEA_MORPHOGENESIS	BP	GLI2
GO_RESPIRATORY_SYSTEM_DEVELOPMENT	BP	GLI2
GO_OSTEOBLAST_DEVELOPMENT	BP	GLI2
GO_NEURON_FATE_COMMITMENT	BP	GLI2
GO_CELL_MORPHOGENESIS_INVOLVED_IN_NEURON_DIFFERENTIATION	BP	GLI2
GO_CELL_FATE_SPECIFICATION	BP	GLI2
GO_CENTRAL_NERVOUS_SYSTEM_NEURON_DEVELOPMENT	BP	GLI2
GO_PROSTATE_GLAND_DEVELOPMENT	BP	GLI2
GO_NOTOCHORD_DEVELOPMENT	BP	GLI2
GO_BRANCHING_MORPHOGENESIS_OF_AN_EPITHELIAL_TUBE	BP	GLI2
GO_REGULATION_OF_NEURAL_PRECURSOR_CELL_PROLIFERATION	BP	GLI2
GO_MAMMARY_GLAND_DUCT_MORPHOGENESIS	BP	GLI2
GO_NEURAL_TUBE_PATTERNING	BP	GLI2
GO_NEGATIVE_REGULATION_OF_CHONDROCYTE_DIFFERENTIATION	BP	GLI2
GO_DEVELOPMENTAL_GROWTH	BP	GLI2
GO_CENTRAL_NERVOUS_SYSTEM_NEURON_AXONOGENESIS	BP	GLI2
GO_INNER_EAR_MORPHOGENESIS	BP	GLI2
GO_NUCLEAR_SPECK	CC	GLI2
GO_CILIARY_TIP	CC	GLI2
GO_CILIARY_PART	CC	GLI2
GO_CILIARY_BASE	CC	GLI2
GO_TRANSCRIPTIONAL_ACTIVATOR_ACTIVITY_RNA_POLYMERASE_II_TRANSCRIPTION_REGULATORY_REGION_SEQUENCE_SPECIFIC_BINDING	MF	GLI2
GO_TRANSITION_METAL_ION_BINDING	MF	GLI2

Survival analysis of GLI2

Methods

Overall Survival

Disease Free Survival (RFS)

Group Cutoff

Median

Quartile

Custom

Cutoff-High(%)

Hazards Ratio (HR) Calculate the hazards ratio based on Cox PH Model.

95% Confidence Interval Add the 95% CI as dotted line.

Axis Units

Expression of GLI2

Pan cancer (TCGA) Cell line (ENCODE) In vitro differentiated cell (ENCODE) Primary cell (ENCODE) Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)