Aging Overview

Aging gene

Gene name: BUB1
Aging type: Prevent
Aging characteristic:
Tissue type: --
Cell name: IMR-90
Gene ID: 699
Category: protein coding
Phenotype: Aging
Experimental category: L
PMID: 27731420
Experiment: SA-β-gal activity assay//Cell morphological analysis//Flow cytometry//Knockdown
Description: We found that knockdown of either genes resulted in significant increase of SA-βgal positive cells (p< 0.0001 for all cultures) when compared to EV (EV = 9.6% SD 1.9, shB2= 55.4 SD 7.1, shS2= 74.7% SD 2.86, SEN= 80.2% SD 3.42). Cells depleted of either gene also underwent drastic changes in morphology reminiscent of SEN, such as larger size and flatter morphology.When analyzed by FACS for a senescent-like phenotype (i.e. elevated size and/or AF)30, we observed significantly higher number of cells bearing senescent-like features in BUB1 and SMC1A-depleted cultures relative to EV (shB2: p=0.0013; shS2: p<0.0001), similar to what observed in SEN cultures (SEN: p<0.0001).


Regulatory relationship

Regulatory pathway: CDKN2A-RB1//P53-CDKN1A
R-AG-Pathway: --//--
Official symbol(s): Regulation of retinoblastoma protein//
Pathway experiment: IF
Pathway description: Cultures depleted of BUB1 and SMC1A were significantly enriched for the frequency of CDKN2A and for CDKN1A positive cells.


Aging network

Annotation:

The green line represents Upregulation.

The purple line represents Downregulation.

The orange line represents Activation.

The yellow line represents Inhibition.

The gray line represents Unclear.



Pathway view

About risk SNP and eQTL

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