Aging Overview

Aging gene

Gene name: KDM4A
Aging type: Prevent
Aging characteristic:
Tissue type: --
Cell name: IMR-90
Gene ID: 9682
Category: protein coding
Phenotype: Aging
Experimental category: L
PMID: 23168260
Experiment: SA-β-gal activity assay//Knockdown
Description: Compared to cells transfected with siGFP, cells depleted of JMJD2A exhibited a flattened vacuolated morphology accompanied by a positive staining to the senescence-associated β-galactosidase assay(SA-β-gal).However, the knockdown of JMJD2A led to the accumulation of PML nuclear bodies,another well- characterized senescence marker.


Regulatory relationship

Target gene: CHD5
Official symbol(s): CHD5
R-AG-Target gene: Inhibition
Subcategory: Unclear
Target gene experiment: CHIP//qRT-PCR//Knockdown
Target gene description: Among the two putative JMJD2A-binding sites identified by ChIP-on-chip on the CHD5 promoter, only the site located at +741 was enriched by ChIP-qPCR.JMJD2A depletion also led to a concomitant increase of CHD5 mRNA and protein.We detected an increase of H3K9(me3) levels at the CHD5 promoter after depletion of JMJD2A .

Regulatory pathway: P53
R-AG-Pathway: Downregulation
Official symbol(s): TP53
Pathway experiment: SA-β-gal activity assay//Knockdown
Pathway description: Transfection of siRNAs targeting JMJD2A triggered senescence in p16-depleted cells but not in p53-depleted cells, suggesting that the senescence response triggered by decreased JMJD2A levels relies primarily on the p53 pathway. Ectopic expression of JMJD2A caused a significant decrease of both p53 and p21 in Ras-expressing cells.


Aging network

Annotation:

The green line represents Upregulation.

The purple line represents Downregulation.

The orange line represents Activation.

The yellow line represents Inhibition.

The gray line represents Unclear.



Pathway view

About risk SNP and eQTL

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