Cancer CRCdb

Sample ID	Biosample type	Tissue type	Biosample name	TF Frequency
Sample_01_001	Cell line	Prostate	22Rv1	0.060532687651332
Sample_01_022	Cell line	Prostate	C4-2B	0.19047619047619
Sample_02_096	Cell line	Mammary Gland	ZR-75-1_1	0.10869565217391
Sample_02_404	Cell line	Mammary Gland	ZR-75-1_2	0.41726618705036

Database name	Link
gnomAD:	gnomAD
ExAC:	ExAC
ICGC:

Database name	Link
Cosmic:
Cosmic cell lines:
Depmap:

TCGA somatic mutations and clinical variants of PATZ1

rsID	Chr	Start	Stop	Ref	Alt	Gene_region	Gene_symble	Effect	TCGA_Occurrence
rs749372022	chr22	31731752	31731752	C	T	exonic	PATZ1	nonsynonymous	PAAD\|1\|185\|0.00541
-	chr22	31741282	31741282	C	G	exonic	PATZ1	nonsynonymous	CESC\|2\|194\|0.01031
-	chr22	31741099	31741099	G	A	exonic	PATZ1	synonymous	BLCA\|1\|396\|0.00253
rs770233611	chr22	31731715	31731715	G	A	exonic	PATZ1	synonymous	UCEC\|1\|248\|0.00403
-	chr22	31741169	31741169	G	A	exonic	PATZ1	synonymous	SKCM\|1\|368\|0.00272
-	chr22	31741457	31741457	G	A	exonic	PATZ1	synonymous	BLCA\|1\|396\|0.00253
-	chr22	31740335	31740335	A	G	exonic	PATZ1	synonymous	SKCM\|1\|368\|0.00272
rs551643471	chr22	31723045	31723045	G	A	exonic	PATZ1	synonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
rs768984900	chr22	31731753	31731753	G	A	exonic	PATZ1	nonsynonymous	CHOL\|1\|35\|0.02857,OV\|1\|469\|0.00213
-	chr22	31740738	31740738	C	T	exonic	PATZ1	nonsynonymous	GBMLGG\|1\|820\|0.00122,LGG\|1\|530\|0.00189
-	chr22	31740604	31740604	G	C	exonic	PATZ1	nonsynonymous	BLCA\|1\|396\|0.00253
-	chr22	31741325	31741325	C	T	exonic	PATZ1	synonymous	COAD\|1\|367\|0.00272,COADREAD\|1\|489\|0.00204
-	chr22	31731681	31731681	G	A	exonic	PATZ1	stopgain	STAD\|3\|395\|0.00759,STES\|3\|395\|0.00759
-	chr22	31740542	31740542	G	T	exonic	PATZ1	nonsynonymous	ESCA\|1\|185\|0.00541
-	chr22	31722878	31722878	C	G	exonic	PATZ1	stoploss	LUSC\|1\|178\|0.00562
-	chr22	31737418	31737418	C	A	exonic	PATZ1	nonsynonymous	STAD\|2\|395\|0.00506,STES\|2\|395\|0.00506
-	chr22	31740815	31740815	G	A	exonic	PATZ1	synonymous	SKCM\|1\|368\|0.00272
-	chr22	31737630	31737630	G	A	exonic	PATZ1	nonsynonymous	SKCM\|1\|368\|0.00272
-	chr22	31731814	31731814	C	T	exonic	PATZ1	synonymous	BRCA\|1\|982\|0.00102
-	chr22	31724906	31724906	G	T	exonic	PATZ1	nonsynonymous	UCEC\|1\|248\|0.00403
-	chr22	31741055	31741055	-	G	exonic	PATZ1	frameshift	STAD\|2\|395\|0.00506,STES\|2\|395\|0.00506
-	chr22	31740992	31740992	G	A	exonic	PATZ1	synonymous	LUAD\|1\|543\|0.00184
-	chr22	31722996	31722996	G	A	exonic	PATZ1	nonsynonymous	LUSC\|1\|178\|0.00562
-	chr22	31741420	31741420	C	T	exonic	PATZ1	nonsynonymous	ACC\|1\|90\|0.01111
-	chr22	31740408	31740408	C	T	exonic	PATZ1	nonsynonymous	SKCM\|1\|368\|0.00272
-	chr22	31731705	31731705	T	C	exonic	PATZ1	nonsynonymous	UCEC\|1\|248\|0.00403
-	chr22	31737553	31737553	G	A	exonic	PATZ1	synonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr22	31737606	31737606	A	G	exonic	PATZ1	nonsynonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr22	31740796	31740796	G	A	exonic	PATZ1	stopgain	HNSC\|1\|512\|0.00195
rs763469287	chr22	31722935	31722935	G	A	exonic	PATZ1	nonsynonymous	COAD\|1\|367\|0.00272,COADREAD\|1\|489\|0.00204
-	chr22	31724792	31724792	G	A	exonic	PATZ1	stopgain	LIHC\|1\|373\|0.00268
-	chr22	31740598	31740598	G	C	exonic	PATZ1	nonsynonymous	UCEC\|1\|248\|0.00403
-	chr22	31731813	31731813	G	A	exonic	PATZ1	nonsynonymous	PRAD\|1\|499\|0.00200,STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr22	31741246	31741246	C	A	exonic	PATZ1	nonsynonymous	UCEC\|1\|248\|0.00403
-	chr22	31740706	31740706	C	A	exonic	PATZ1	nonsynonymous	COAD\|1\|367\|0.00272,COADREAD\|1\|489\|0.00204
-	chr22	31738885	31738885	G	A	exonic	PATZ1	stopgain	BLCA\|1\|396\|0.00253
-	chr22	31738934	31738934	C	G	exonic	PATZ1	nonsynonymous	SKCM\|1\|368\|0.00272
-	chr22	31723029	31723029	C	-	exonic	PATZ1	frameshift	LIHC\|1\|373\|0.00268
-	chr22	31723130	31723131	TT	-	exonic	PATZ1	frameshift	ESCA\|1\|185\|0.00541
-	chr22	31722972	31722972	C	G	exonic	PATZ1	nonsynonymous	LUAD\|4\|543\|0.00737
rs139600326	chr22	31723054	31723054	G	A	exonic	PATZ1	synonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
rs140597902	chr22	31741262	31741262	G	A	exonic	PATZ1	synonymous	COAD\|1\|367\|0.00272,COADREAD\|1\|489\|0.00204
rs759161425	chr22	31740842	31740842	G	A	exonic	PATZ1	synonymous	SKCM\|2\|368\|0.00543
rs373917062	chr22	31737575	31737575	G	A	exonic	PATZ1	nonsynonymous	COAD\|1\|367\|0.00272,COADREAD\|1\|489\|0.00204
-	chr22	31741129	31741129	C	A	exonic	PATZ1	stopgain	CESC\|1\|194\|0.00515
-	chr22	31724799	31724799	T	C	exonic	PATZ1	nonsynonymous	UCEC\|1\|248\|0.00403
-	chr22	31722909	31722909	C	G	exonic	PATZ1	nonsynonymous	BLCA\|1\|396\|0.00253
-	chr22	31737633	31737633	C	T	exonic	PATZ1	nonsynonymous	HNSC\|1\|512\|0.00195
-	chr22	31723052	31723052	C	T	exonic	PATZ1	nonsynonymous	SARC\|1\|247\|0.00405
-	chr22	31731850	31731850	C	G	splicing	PATZ1	splicing	BLCA\|1\|396\|0.00253
-	chr22	31741322	31741322	G	A	exonic	PATZ1	synonymous	LUSC\|1\|178\|0.00562
rs766392086	chr22	31723224	31723224	C	T	exonic	PATZ1	nonsynonymous	PRAD\|1\|499\|0.00200
rs765835799	chr22	31737641	31737641	G	A	exonic	PATZ1	nonsynonymous	ESCA\|1\|185\|0.00541
-	chr22	31740715	31740715	G	T	exonic	PATZ1	nonsynonymous	SARC\|1\|247\|0.00405
-	chr22	31741165	31741165	A	T	exonic	PATZ1	nonsynonymous	LUAD\|2\|543\|0.00368
-	chr22	31741150	31741150	A	T	exonic	PATZ1	nonsynonymous	ESCA\|1\|185\|0.00541
-	chr22	31741114	31741114	A	G	exonic	PATZ1	nonsynonymous	KICH\|1\|66\|0.01515,KIPAN\|1\|799\|0.00125
-	chr22	31740475	31740475	G	A	exonic	PATZ1	nonsynonymous	PAAD\|1\|185\|0.00541
-	chr22	31731763	31731763	C	T	exonic	PATZ1	synonymous	HNSC\|1\|512\|0.00195
-	chr22	31741473	31741473	C	A	exonic	PATZ1	nonsynonymous	ACC\|1\|90\|0.01111
-	chr22	31723166	31723166	A	G	exonic	PATZ1	nonsynonymous	COADREAD\|1\|489\|0.00204,READ\|1\|122\|0.00820
-	chr22	31740573	31740573	G	C	exonic	PATZ1	nonsynonymous	CESC\|1\|194\|0.00515
-	chr22	31740795	31740795	C	T	exonic	PATZ1	nonsynonymous	BLCA\|1\|396\|0.00253,LUSC\|1\|178\|0.00562
-	chr22	31741335	31741335	G	A	exonic	PATZ1	nonsynonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr22	31740356	31740356	C	T	exonic	PATZ1	synonymous	UCEC\|1\|248\|0.00403
-	chr22	31723239	31723239	G	A	exonic	PATZ1	nonsynonymous	LUAD\|1\|543\|0.00184
rs757918024	chr22	31741545	31741545	T	C	exonic	PATZ1	nonsynonymous	LUAD\|1\|543\|0.00184
-	chr22	31724828	31724828	C	G	exonic	PATZ1	nonsynonymous	ESCA\|1\|185\|0.00541
-	chr22	31741294	31741294	C	G	exonic	PATZ1	nonsynonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr22	31737399	31737399	C	T	exonic	PATZ1	nonsynonymous	BLCA\|1\|396\|0.00253
rs377660548	chr22	31741062	31741062	C	T	exonic	PATZ1	nonsynonymous	HNSC\|1\|512\|0.00195
-	chr22	31722980	31722980	G	T	exonic	PATZ1	nonsynonymous	BLCA\|1\|396\|0.00253
-	chr22	31722980	31722980	G	A	exonic	PATZ1	nonsynonymous	SKCM\|2\|368\|0.00543
-	chr22	31741063	31741063	G	A	exonic	PATZ1	nonsynonymous	SKCM\|1\|368\|0.00272
-	chr22	31738942	31738942	C	T	exonic	PATZ1	nonsynonymous	SKCM\|1\|368\|0.00272
-	chr22	31738908	31738908	G	A	exonic	PATZ1	nonsynonymous	BLCA\|1\|396\|0.00253
-	chr22	31722987	31722987	T	A	exonic	PATZ1	nonsynonymous	LUAD\|1\|543\|0.00184
-	chr22	31740562	31740562	C	T	exonic	PATZ1	nonsynonymous	SARC\|1\|247\|0.00405
-	chr22	31723201	31723201	C	T	exonic	PATZ1	synonymous	BLCA\|1\|396\|0.00253
-	chr22	31741056	31741056	G	-	exonic	PATZ1	frameshift	COAD\|2\|367\|0.00545,COADREAD\|2\|489\|0.00409
rs751106943	chr22	31740473	31740473	C	T	exonic	PATZ1	synonymous	ACC\|1\|90\|0.01111,PAAD\|2\|185\|0.01081
-	chr22	31724897	31724897	G	C	exonic	PATZ1	synonymous	LUSC\|1\|178\|0.00562
-	chr22	31737642	31737642	G	A	exonic	PATZ1	nonsynonymous	BLCA\|1\|396\|0.00253
-	chr22	31740386	31740386	-	T	exonic	PATZ1	frameshift	CESC\|1\|194\|0.00515
-	chr22	31741479	31741479	C	T	exonic	PATZ1	nonsynonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr22	31741081	31741081	C	G	exonic	PATZ1	nonsynonymous	LUAD\|1\|543\|0.00184
-	chr22	31741321	31741321	C	A	exonic	PATZ1	nonsynonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr22	31740382	31740382	G	A	exonic	PATZ1	nonsynonymous	PAAD\|1\|185\|0.00541
-	chr22	31741398	31741398	T	C	exonic	PATZ1	nonsynonymous	UCEC\|1\|248\|0.00403
-	chr22	31723094	31723094	G	C	exonic	PATZ1	nonsynonymous	UCEC\|1\|248\|0.00403
-	chr22	31741483	31741483	T	A	exonic	PATZ1	nonsynonymous	KIPAN\|1\|799\|0.00125,KIRC\|1\|451\|0.00222
-	chr22	31741415	31741415	C	T	exonic	PATZ1	synonymous	DLBC\|1\|48\|0.02083
-	chr22	31741404	31741404	C	T	exonic	PATZ1	nonsynonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253

TF name:	PATZ1
TF family:	ZBTB
Ensembl gene ID:	ENSG00000100105
Ensembl protein ID:	ENSP00000337520, ENSP00000337520, ENSP00000215919, ENSP00000215919, ENSP00000266269, ENSP00000266269, ENSP00000384173
Entrez gene ID:	23598

Database name	Link	Database name	Link
NCBI Gene:		Genecards:
Uniprot:		Wikipedia:
Cosmic 3D:		Geneontology:
CCLE:

pathway_ID	pathway_name	pathway_source	gene_number	edge_number
pathway0000492	Coregulation of Androgen receptor activity	pid	61	268
pathway0002863	Hs_Androgen_receptor_signaling_pathway_WP138_79958	wikipathways	27	107

GO_term_name	GO_term_type	TF_name
GO_NEGATIVE_REGULATION_OF_GENE_EXPRESSION	BP	PATZ1
GO_POSITIVE_REGULATION_OF_BIOSYNTHETIC_PROCESS	BP	PATZ1

TF information

TCGA somatic mutations and clinical variants of PATZ1

Survival analysis of PATZ1

Expression of PATZ1