TF information
| TF name: | NFYA |
| TF family: | NF-YA |
| Ensembl gene ID: | ENSG00000001167 |
| Ensembl protein ID: | ENSP00000229418, ENSP00000345702 |
| Entrez gene ID: | 4800 |
| Database name | Link | Database name | Link |
| NCBI Gene: |  |
Genecards: |  |
| Uniprot: |  |
Wikipedia: |  |
| Cosmic 3D: |  |
Geneontology: |  |
| CCLE: |  |
Frequency of NFYA in all biosamples
| Sample ID | Biosample type | Tissue type | Biosample name | TF Frequency |
|---|---|---|---|---|
| Sample_02_219 | Cell line | Mammary Gland | MDA-MB-231 | 0.1078431372549 |
| Sample_02_310 | Cell line | Neuroblastoma | SJNB8 | 0.062909567496723 |
| Sample_02_354 | Cell line | Colon | Colo205 | 0.09009009009009 |
NFYA distribution in samples’ most representative CRC
| Sample ID | Tissue type | Biosample type | Biosample name |
|---|---|---|---|
| Sample_02_219 | Mammary Gland | Cell line | MDA-MB-231 |
| Sample_02_354 | Colon | Cell line | Colo205 |
NFYA distribution in all CRCs
Genomic distribution of SEs associated with NFYA
Genomic distribution of SEs associated with TF
Figure legend:
Genomic distribution of SEs associated with TF: It can roughly understand the genomic regions of SEs associated with TF, and help to carry out the next analysis, such as knocking down the experiment.
What is important information?
The yellow box can be thought of as the common genomic regions that regulates the SEs associated with TF. For example, if a knockdown experiment is performed on this region, then theoretically, the expression of the TF will be greatly reduced.
| Database name | Link |
|---|---|
| Cosmic: |  |
| Cosmic cell lines: |  |
| Depmap: |  |
TCGA somatic mutations and clinical variants of NFYA
| rsID | Chr | Start | Stop | Ref | Alt | Gene_region | Gene_symble | Effect | TCGA_Occurrence |
|---|---|---|---|---|---|---|---|---|---|
| - | chr6 | 41060658 | 41060658 | C | A | exonic | NFYA | nonsynonymous | COAD|1|367|0.00272,COADREAD|1|489|0.00204 |
| - | chr6 | 41051876 | 41051876 | G | A | exonic | NFYA | nonsynonymous | KIPAN|1|799|0.00125,KIRP|1|282|0.00355 |
| - | chr6 | 41060818 | 41060818 | G | T | exonic | NFYA | nonsynonymous | UCEC|1|248|0.00403 |
| rs576540807 | chr6 | 41060812 | 41060812 | A | G | exonic | NFYA | synonymous | LUAD|1|543|0.00184 |
| - | chr6 | 41065138 | 41065138 | C | A | exonic | NFYA | synonymous | UCEC|1|248|0.00403 |
| - | chr6 | 41062195 | 41062195 | C | T | exonic | NFYA | stopgain | PRAD|1|499|0.00200 |
| rs747719395 | chr6 | 41060757 | 41060757 | G | A | exonic | NFYA | nonsynonymous | UCEC|1|248|0.00403 |
| - | chr6 | 41060751 | 41060751 | A | G | exonic | NFYA | nonsynonymous | DLBC|1|48|0.02083 |
| - | chr6 | 41065119 | 41065119 | A | C | exonic | NFYA | nonsynonymous | UCEC|1|248|0.00403 |
| - | chr6 | 41059354 | 41059354 | C | G | exonic | NFYA | nonsynonymous | COADREAD|1|489|0.00204,READ|1|122|0.00820 |
| - | chr6 | 41051837 | 41051837 | C | T | exonic | NFYA | nonsynonymous | BLCA|1|396|0.00253 |
| - | chr6 | 41062196 | 41062196 | G | A | exonic | NFYA | nonsynonymous | UCEC|2|248|0.00806 |
| - | chr6 | 41057378 | 41057378 | G | A | exonic | NFYA | nonsynonymous | LUSC|1|178|0.00562 |
| - | chr6 | 41060767 | 41060767 | G | C | exonic | NFYA | nonsynonymous | CESC|1|194|0.00515 |
| - | chr6 | 41059422 | 41059422 | G | A | exonic | NFYA | nonsynonymous | KIPAN|1|799|0.00125,KIRP|1|282|0.00355 |
| rs372824683 | chr6 | 41060780 | 41060780 | C | T | exonic | NFYA | stopgain | UCEC|1|248|0.00403 |
| - | chr6 | 41062197 | 41062197 | A | T | exonic | NFYA | synonymous | COAD|1|367|0.00272,COADREAD|1|489|0.00204 |
| - | chr6 | 41060791 | 41060791 | A | G | exonic | NFYA | synonymous | ACC|1|90|0.01111 |
| - | chr6 | 41065114 | 41065114 | G | A | exonic | NFYA | nonsynonymous | CESC|1|194|0.00515 |
| - | chr6 | 41051827 | 41051827 | C | A | exonic | NFYA | nonsynonymous | COAD|1|367|0.00272,COADREAD|1|489|0.00204 |
| - | chr6 | 41060708 | 41060708 | G | A | exonic | NFYA | nonsynonymous | CESC|1|194|0.00515 |
| - | chr6 | 41058044 | 41058044 | G | T | exonic | NFYA | nonsynonymous | LUAD|1|543|0.00184 |
| - | chr6 | 41057404 | 41057404 | C | T | exonic | NFYA | synonymous | BLCA|1|396|0.00253 |
| rs377013862 | chr6 | 41065110 | 41065110 | C | T | exonic | NFYA | synonymous | HNSC|1|512|0.00195 |
| rs774868192 | chr6 | 41062174 | 41062174 | C | T | exonic | NFYA | nonsynonymous | UCEC|1|248|0.00403 |
| - | chr6 | 41057388 | 41057388 | G | T | exonic | NFYA | nonsynonymous | COADREAD|1|489|0.00204,READ|1|122|0.00820 |
| - | chr6 | 41062141 | 41062141 | C | T | exonic | NFYA | synonymous | LUAD|1|543|0.00184 |
| - | chr6 | 41059406 | 41059406 | - | TGGTCAA | exonic | NFYA | frameshift | GBMLGG|1|820|0.00122,LGG|1|530|0.00189 |
| - | chr6 | 41051789 | 41051789 | A | T | exonic | NFYA | nonsynonymous | SKCM|1|368|0.00272 |
| - | chr6 | 41057426 | 41057426 | G | A | exonic | NFYA | nonsynonymous | COAD|1|367|0.00272,COADREAD|1|489|0.00204 |
| - | chr6 | 41057410 | 41057410 | C | G | exonic | NFYA | nonsynonymous | ACC|1|90|0.01111 |
| - | chr6 | 41062180 | 41062180 | C | T | exonic | NFYA | nonsynonymous | UCEC|1|248|0.00403 |
| - | chr6 | 41059368 | 41059368 | C | T | exonic | NFYA | stopgain | BLCA|1|396|0.00253 |
| - | chr6 | 41048549 | 41048549 | G | T | splicing | NFYA | splicing | UCEC|1|248|0.00403 |
| - | chr6 | 41051832 | 41051832 | C | G | exonic | NFYA | nonsynonymous | LIHC|1|373|0.00268 |
| - | chr6 | 41046900 | 41046900 | G | T | exonic | NFYA | nonsynonymous | KIPAN|1|799|0.00125,KIRP|1|282|0.00355 |
| - | chr6 | 41057337 | 41057337 | G | A | exonic | NFYA | nonsynonymous | GBMLGG|1|820|0.00122,LGG|1|530|0.00189 |
| - | chr6 | 41059431 | 41059431 | A | G | exonic | NFYA | nonsynonymous | SKCM|1|368|0.00272 |
| rs771405179 | chr6 | 41048594 | 41048594 | G | A | exonic | NFYA | synonymous | LIHC|1|373|0.00268 |
| - | chr6 | 41065105 | 41065105 | - | A | exonic | NFYA | frameshift | LIHC|1|373|0.00268 |
| - | chr6 | 41059278 | 41059278 | - | T | exonic | NFYA | frameshift | ESCA|1|185|0.00541 |
| TF_name | Disease_name | Disease_class | Disease_semantic_type | TF_disease_source |
|---|---|---|---|---|
| NFYA | Lung Neoplasms | C04;C08 | Neoplastic Process | CTD_human |
| NFYA | Malignant neoplasm of lung | C04;C08 | Neoplastic Process | CTD_human |
| pathway_ID | pathway_name | pathway_source | gene_number | edge_number |
|---|---|---|---|---|
| pathway0000069 | Activation of gene expression by SREBF (SREBP) | reactome | 42 | 266 |
| pathway0000230 | ATF4 activates genes | reactome | 25 | 112 |
| pathway0000231 | ATF6-alpha activates chaperone genes | reactome | 10 | 27 |
| pathway0002391 | Validated targets of C-MYC transcriptional repression | pid | 63 | 385 |
| pathway0002601 | Antigen processing and presentation | kegg | 75 | 466 |
| GO_term_name | GO_term_type | TF_name |
|---|---|---|
| GO_TRANSCRIPTION_FACTOR_COMPLEX | CC | NFYA |
| GO_CORE_PROMOTER_BINDING | MF | NFYA |
| GO_TRANSCRIPTION_COFACTOR_BINDING | MF | NFYA |
| GO_CORE_PROMOTER_SEQUENCE_SPECIFIC_DNA_BINDING | MF | NFYA |