Sample ID | Biosample type | Tissue type | Biosample name | TF Frequency |
---|---|---|---|---|
Sample_02_069 | Cell line | Brain | SF268 | 0.24427480916031 |
Sample_02_241 | Cell line | Colon | V456 | 0.022573363431151 |
Sample ID | Tissue type | Biosample type | Biosample name |
---|---|---|---|
Sample_02_241 | Colon | Cell line | V456 |
rsID | Chr | Start | Stop | Ref | Alt | Gene_region | Gene_symble | Effect | TCGA_Occurrence |
---|---|---|---|---|---|---|---|---|---|
rs757987864 | chr2 | 237075028 | 237075028 | C | T | exonic | GBX2 | synonymous | BLCA|2|396|0.00505,LUAD|1|543|0.00184 |
- | chr2 | 237074751 | 237074751 | T | C | exonic | GBX2 | nonsynonymous | UCEC|1|248|0.00403 |
- | chr2 | 237074648 | 237074648 | C | T | exonic | GBX2 | nonsynonymous | COADREAD|1|489|0.00204,READ|1|122|0.00820,STAD|1|395|0.00253,STES|1|395|0.00253 |
- | chr2 | 237074561 | 237074561 | G | T | exonic | GBX2 | nonsynonymous | LUAD|1|543|0.00184 |
- | chr2 | 237074930 | 237074930 | C | A | exonic | GBX2 | nonsynonymous | STAD|1|395|0.00253,STES|1|395|0.00253 |
rs752822897 | chr2 | 237076119 | 237076119 | C | T | exonic | GBX2 | nonsynonymous | STAD|1|395|0.00253,STES|1|395|0.00253 |
- | chr2 | 237074658 | 237074658 | C | T | exonic | GBX2 | nonsynonymous | CESC|1|194|0.00515 |
- | chr2 | 237074829 | 237074829 | G | C | exonic | GBX2 | nonsynonymous | OV|1|469|0.00213 |
- | chr2 | 237076276 | 237076276 | G | A | exonic | GBX2 | synonymous | STAD|1|395|0.00253,STES|1|395|0.00253 |
- | chr2 | 237074513 | 237074513 | G | T | UTR3 | GBX2 | unknown | CESC|1|194|0.00515 |
- | chr2 | 237074712 | 237074712 | G | A | exonic | GBX2 | stopgain | COAD|1|367|0.00272,COADREAD|1|489|0.00204 |
- | chr2 | 237074607 | 237074607 | T | G | exonic | GBX2 | synonymous | CESC|1|194|0.00515 |
- | chr2 | 237075029 | 237075029 | G | A | exonic | GBX2 | nonsynonymous | SKCM|1|368|0.00272 |
- | chr2 | 237074656 | 237074656 | C | A | exonic | GBX2 | nonsynonymous | UCEC|1|248|0.00403 |
- | chr2 | 237074856 | 237074856 | G | A | exonic | GBX2 | nonsynonymous | PRAD|1|499|0.00200 |
- | chr2 | 237074763 | 237074763 | C | A | exonic | GBX2 | nonsynonymous | SKCM|1|368|0.00272 |
- | chr2 | 237075079 | 237075079 | G | A | exonic | GBX2 | synonymous | PAAD|1|185|0.00541,STAD|1|395|0.00253,STES|1|395|0.00253 |
- | chr2 | 237075034 | 237075034 | G | A | exonic | GBX2 | synonymous | STAD|1|395|0.00253,STES|1|395|0.00253 |
- | chr2 | 237074994 | 237074994 | C | T | exonic | GBX2 | nonsynonymous | BLCA|1|396|0.00253 |
- | chr2 | 237074887 | 237074887 | G | A | exonic | GBX2 | synonymous | SARC|1|247|0.00405 |
- | chr2 | 237074669 | 237074669 | G | A | exonic | GBX2 | nonsynonymous | SKCM|1|368|0.00272 |
- | chr2 | 237076138 | 237076138 | G | A | exonic | GBX2 | synonymous | KIPAN|1|799|0.00125,KIRC|1|451|0.00222 |
- | chr2 | 237076120 | 237076120 | G | A | exonic | GBX2 | synonymous | STAD|1|395|0.00253,STES|1|395|0.00253 |
- | chr2 | 237074503 | 237074503 | C | A | UTR3 | GBX2 | unknown | CESC|1|194|0.00515 |
- | chr2 | 237075043 | 237075043 | C | A | exonic | GBX2 | nonsynonymous | UCEC|1|248|0.00403 |
- | chr2 | 237074842 | 237074842 | G | T | exonic | GBX2 | nonsynonymous | BLCA|1|396|0.00253 |
- | chr2 | 237074835 | 237074835 | C | T | exonic | GBX2 | nonsynonymous | BRCA|1|982|0.00102 |
- | chr2 | 237076102 | 237076102 | C | A | exonic | GBX2 | nonsynonymous | PAAD|1|185|0.00541 |
- | chr2 | 237074757 | 237074757 | C | T | exonic | GBX2 | nonsynonymous | STAD|1|395|0.00253,STES|1|395|0.00253 |
- | chr2 | 237074614 | 237074614 | G | A | exonic | GBX2 | synonymous | LUAD|1|543|0.00184 |
- | chr2 | 237074797 | 237074797 | T | C | exonic | GBX2 | synonymous | UCEC|1|248|0.00403 |
- | chr2 | 237076461 | 237076461 | G | T | exonic | GBX2 | nonsynonymous | TGCT|1|155|0.00645 |
- | chr2 | 237076428 | 237076435 | GCGGCGGC | - | exonic | GBX2 | frameshift | KIPAN|1|799|0.00125,KIRC|1|451|0.00222 |
- | chr2 | 237076320 | 237076320 | C | T | exonic | GBX2 | nonsynonymous | PAAD|1|185|0.00541 |
- | chr2 | 237074899 | 237074899 | G | A | exonic | GBX2 | synonymous | SKCM|1|368|0.00272 |
- | chr2 | 237076428 | 237076429 | GC | - | exonic | GBX2 | frameshift | ESCA|1|185|0.00541,GBMLGG|1|820|0.00122,LGG|1|530|0.00189,PRAD|1|499|0.00200 |
- | chr2 | 237074815 | 237074815 | C | A | exonic | GBX2 | nonsynonymous | UCEC|1|248|0.00403 |
- | chr2 | 237074823 | 237074823 | C | G | exonic | GBX2 | nonsynonymous | HNSC|1|512|0.00195 |
- | chr2 | 237074742 | 237074742 | C | A | exonic | GBX2 | stopgain | BLCA|1|396|0.00253 |
- | chr2 | 237074936 | 237074936 | T | C | exonic | GBX2 | nonsynonymous | KICH|1|66|0.01515,KIPAN|1|799|0.00125 |
- | chr2 | 237074756 | 237074756 | G | T | exonic | GBX2 | nonsynonymous | BLCA|1|396|0.00253 |
- | chr2 | 237074959 | 237074959 | G | T | exonic | GBX2 | synonymous | ESCA|1|185|0.00541 |
- | chr2 | 237074893 | 237074893 | G | A | exonic | GBX2 | synonymous | STAD|1|395|0.00253,STES|1|395|0.00253 |
- | chr2 | 237076492 | 237076492 | G | A | exonic | GBX2 | synonymous | CESC|1|194|0.00515 |
- | chr2 | 237076349 | 237076349 | C | T | exonic | GBX2 | nonsynonymous | SKCM|1|368|0.00272 |
rs866290647 | chr2 | 237074778 | 237074778 | C | T | exonic | GBX2 | nonsynonymous | PAAD|1|185|0.00541 |
- | chr2 | 237074654 | 237074654 | G | T | exonic | GBX2 | nonsynonymous | LUAD|1|543|0.00184 |
- | chr2 | 237074680 | 237074680 | G | A | exonic | GBX2 | synonymous | GBMLGG|1|820|0.00122,LGG|1|530|0.00189 |
- | chr2 | 237074908 | 237074908 | C | T | exonic | GBX2 | synonymous | STAD|1|395|0.00253,STES|1|395|0.00253 |
- | chr2 | 237076128 | 237076128 | C | T | exonic | GBX2 | nonsynonymous | DLBC|1|48|0.02083 |
- | chr2 | 237074616 | 237074616 | G | T | exonic | GBX2 | nonsynonymous | UCEC|1|248|0.00403 |
- | chr2 | 237076316 | 237076316 | A | - | exonic | GBX2 | frameshift | STAD|1|395|0.00253,STES|1|395|0.00253 |
rs755522427 | chr2 | 237076108 | 237076108 | C | T | exonic | GBX2 | synonymous | LUAD|1|543|0.00184 |
- | chr2 | 237075004 | 237075004 | C | A | exonic | GBX2 | synonymous | HNSC|2|512|0.00391 |
- | chr2 | 237074746 | 237074746 | G | T | exonic | GBX2 | synonymous | LUAD|1|543|0.00184 |
TF_name | Disease_name | Disease_class | Disease_semantic_type | TF_disease_source |
---|---|---|---|---|
GBX2 | AMYOTROPHIC LATERAL SCLEROSIS 1 | C10;C18 | Disease or Syndrome | CTD_human |
GBX2 | Amyotrophic Lateral Sclerosis, Sporadic | C10;C18 | Disease or Syndrome | CTD_human |
pathway_ID | pathway_name | pathway_source | gene_number | edge_number |
---|---|---|---|---|
pathway0002746 | Hs_Dopaminergic_Neurogenesis_WP2855_87239 | wikipathways | 19 | 37 |
pathway0002747 | Hs_Neural_Crest_Differentiation_WP2064_79263 | wikipathways | 40 | 129 |
GO_term_name | GO_term_type | TF_name |
---|---|---|
GO_FOREBRAIN_NEURON_DEVELOPMENT | BP | GBX2 |
GO_HINDBRAIN_DEVELOPMENT | BP | GBX2 |
GO_NEURAL_TUBE_DEVELOPMENT | BP | GBX2 |
GO_AMEBOIDAL_TYPE_CELL_MIGRATION | BP | GBX2 |
GO_FOREBRAIN_GENERATION_OF_NEURONS | BP | GBX2 |
GO_NEURAL_PRECURSOR_CELL_PROLIFERATION | BP | GBX2 |
GO_NEURAL_CREST_CELL_MIGRATION | BP | GBX2 |
GO_PATTERNING_OF_BLOOD_VESSELS | BP | GBX2 |
GO_ROSTROCAUDAL_NEURAL_TUBE_PATTERNING | BP | GBX2 |
GO_BLOOD_VESSEL_MORPHOGENESIS | BP | GBX2 |
GO_EAR_MORPHOGENESIS | BP | GBX2 |
GO_THALAMUS_DEVELOPMENT | BP | GBX2 |
GO_MESENCHYME_DEVELOPMENT | BP | GBX2 |
GO_AUTONOMIC_NERVOUS_SYSTEM_DEVELOPMENT | BP | GBX2 |
GO_TUBE_MORPHOGENESIS | BP | GBX2 |
GO_NEURON_PROJECTION_GUIDANCE | BP | GBX2 |
GO_NEURAL_TUBE_PATTERNING | BP | GBX2 |
GO_RNA_POLYMERASE_II_CORE_PROMOTER_SEQUENCE_SPECIFIC_DNA_BINDING | MF | GBX2 |
GO_TRANSCRIPTIONAL_REPRESSOR_ACTIVITY_RNA_POLYMERASE_II_TRANSCRIPTION_FACTOR_BINDING | MF | GBX2 |