TcoF overview
| TcoF: | Trim28 | |
| GeneID: | 21849 | |
| Name: | Tripartite motif-containing 28 | |
| Ensembl: | ENSMUSG00000005566 | |
| Species: | Mouse | |
| Class: | NA | |
| Family: | Tripartite motif | |
| Disease: | -- | |
| Go-trem: | 43 | |
| Pathway: | 1 | |
| Super Enhancer: | chr7:13029578-13030514 chr7:13005520-13031341 chr7:13028191-13031338 chr7:13028587-13030680 chr7:13017573-13018503 chr7:13017800-13018568 chr7:13018041-13018547 |
|
| Enhancer: |
chr7:13402500-13404160 chr7:13420870-13421640 chr7:13507730-13508320 chr7:13508430-13510550 chr7:13533980-13536120 chr7:13563560-13564340 chr7:13610410-13610650 chr7:13610760-13610990 chr7:13617550-13617630 chr7:13617690-13617780 chr7:13617910-13617990 chr7:13623320-13623410 chr7:13638980-13639820 chr7:13403780-13404160 chr7:13535180-13535490 chr7:13610410-13610570 chr7:13888180-13888530 chr7:13534440-13536120 chr7:13621280-13621560 chr7:13639220-13639820 chr7:13420510-13420750 chr7:13507730-13507870 chr7:13563560-13564150 chr7:13610410-13610580 chr7:13388270-13389120 chr7:13403670-13404160 chr7:13495170-13496010 chr7:13534260-13535440 chr7:13563560-13564120 chr7:13610410-13610550 chr7:13639380-13639820 chr7:13420510-13420790 chr7:13507730-13507910 chr7:13534430-13535560 chr7:13610410-13610600 chr7:13403860-13404160 chr7:13495400-13496000 chr7:13388280-13389120 chr7:13403440-13404160 chr7:13420870-13421370 chr7:13534210-13536720 chr7:13564720-13564790 chr7:13564990-13565230 chr7:13621100-13621190 chr7:13621250-13621560 chr7:13621820-13621910 chr7:13622000-13622900 chr7:13638930-13639820 chr7:13403490-13404160 chr7:13534160-13536150 chr7:13572320-13573690 chr7:13610410-13610470 chr7:13886820-13888530 chr7:13888640-13889140 chr7:13420870-13421400 chr7:13534230-13536610 chr7:13594690-13595030 chr7:13565320-13565850 chr7:13388320-13389120 chr7:13403240-13404160 chr7:13420870-13421070 chr7:13533300-13536360 chr7:13638670-13639820 chr7:13358160-13358780 chr7:13358930-13359460 chr7:13387690-13389120 chr7:13403080-13404160 chr7:13420870-13421510 chr7:13508430-13509630 chr7:13511210-13511740 chr7:13511840-13511920 chr7:13512810-13513230 chr7:13533540-13536470 chr7:13554270-13554710 chr7:13591720-13592370 chr7:13611120-13611900 chr7:13630040-13631080 chr7:13638530-13639820 chr7:13387730-13389120 chr7:13403050-13404160 chr7:13420870-13421490 chr7:13508430-13508800 chr7:13533910-13536160 chr7:13611120-13611430 chr7:13622060-13622900 chr7:13420870-13421440 chr7:13508430-13510740 chr7:13533480-13536220 chr7:13611590-13612960 chr7:13622200-13622900 chr7:13639300-13639820 chr7:13565320-13565600 chr7:13534350-13536130 chr7:13563560-13563950 chr7:13610410-13610610 chr7:13639160-13639820 chr7:13534560-13534950 chr7:13563560-13564220 chr7:13639430-13639820 chr7:13508430-13509850 chr7:13533890-13536130 chr7:13388350-13389120 chr7:13487900-13488940 chr7:13489430-13489740 chr7:13534060-13535870 chr7:13565320-13565960 chr7:13403690-13404160 chr7:13420870-13421030 chr7:13507730-13507980 chr7:13534240-13535940 chr7:13466700-13467150 chr7:13488370-13488940 chr7:13387490-13389120 chr7:13402860-13404160 chr7:13487800-13488940 chr7:13489430-13490600 chr7:13533770-13536300 chr7:13613480-13613750 chr7:13613900-13614010 chr7:13614120-13614220 chr7:13614330-13614430 chr7:13614470-13614550 chr7:13614600-13614690 chr7:13630040-13630620 chr7:13708820-13709920 chr7:13466700-13467400 chr7:13388100-13389120 chr7:13403400-13404160 chr7:13420870-13421100 chr7:13488440-13488940 chr7:13533950-13536110 chr7:13611120-13612960 chr7:13613290-13613360 chr7:13614940-13615020 chr7:13615340-13615430 chr7:13615550-13615630 chr7:13615720-13615800 chr7:13615940-13616030 chr7:13622320-13622900 chr7:13630040-13630400 chr7:13610760-13610880 chr7:13622600-13622900 chr7:13611120-13612740 chr7:13403330-13404160 chr7:13508430-13508810 chr7:13534150-13535730 chr7:13611120-13611240 chr7:13622290-13622900 chr7:13639170-13639820 chr7:13466700-13467070 chr7:13495130-13496080 chr7:13534210-13535760 chr7:13563560-13564210 chr7:13402710-13404160 chr7:13508430-13510010 chr7:13621660-13621780 chr7:13859890-13862490 chr7:13893870-13894460 chr7:13894600-13896350 chr7:13896450-13896540 chr7:13896770-13900580 chr7:13565320-13566260 chr7:13893020-13893810 chr7:13403210-13404160 chr7:13466700-13467540 chr7:13565320-13566230 chr7:13507730-13508010 chr7:13639330-13639820 chr7:13508430-13508790 chr7:13564990-13565120 chr7:13611120-13612230 chr7:13387920-13389120 chr7:13507730-13508000 chr7:13512810-13512960 chr7:13611120-13612480 chr7:13621490-13621560 chr7:13388160-13389120 chr7:13403340-13404160 chr7:13534500-13536230 chr7:13594260-13595030 chr7:13611120-13611190 chr7:13388310-13389120 chr7:13403660-13404160 chr7:13513100-13513230 chr7:13534040-13535740 chr7:13563560-13564180 chr7:13611120-13611480 chr7:13639680-13639820 chr7:13420510-13420730 chr7:13623340-13623410 chr7:13487690-13488940 chr7:13489430-13491150 chr7:13533070-13536870 chr7:13874840-13876530 chr7:13876880-13877480 chr7:13403590-13404160 chr7:13534360-13536150 chr7:13638860-13639820 chr7:13420870-13421460 chr7:13534200-13536200 chr7:13639200-13639820 chr7:13403760-13404160 chr7:13508430-13509400 chr7:13388290-13389120 chr7:13403770-13404160 chr7:13534370-13535040 chr7:13639250-13639820 chr7:13388200-13389120 chr7:13403630-13404160 chr7:13420510-13420770 chr7:13507730-13507970 chr7:13534260-13535980 chr7:13639370-13639820 chr7:13508430-13508580 chr7:13534100-13536210 chr7:13554820-13555460 chr7:13571060-13571840 chr7:13572000-13573690 chr7:13574210-13574350 chr7:13574450-13574700 chr7:13574900-13575000 chr7:13616920-13617350 chr7:13639660-13639820 chr7:13565320-13566240 chr7:13388220-13389120 chr7:13403180-13404160 chr7:13420870-13421250 chr7:13535120-13536340 chr7:13611120-13611700 chr7:13534430-13536180 chr7:13594790-13595030 chr7:13622220-13622900 chr7:13639340-13639820 chr7:13639400-13639820 chr7:13534060-13536130 chr7:13495560-13496050 chr7:13403740-13404160 chr7:13420870-13421060 chr7:13534120-13536050 chr7:13572680-13573210 chr7:13639050-13639820 chr7:13709050-13709630 chr7:13887450-13888530 chr7:13895650-13896350 chr7:13420870-13421150 chr7:13507730-13508100 chr7:13563560-13564300 chr7:13622470-13622900 chr7:13387660-13389120 chr7:13508430-13509230 chr7:13534220-13535830 chr7:13611120-13612360 chr7:13638880-13639820 chr7:13373250-13373720 chr7:13388480-13389120 chr7:13403640-13404160 chr7:13534420-13535810 chr7:13638950-13639820 chr7:13466700-13467460 chr7:13388400-13389120 chr7:13535100-13535720 chr7:13639500-13639820 chr7:13508430-13509720 chr7:13534420-13535950 chr7:13622310-13622900 chr7:13639290-13639820 chr7:13420870-13420960 chr7:13508430-13508760 chr7:13387990-13389120 chr7:13402910-13404160 chr7:13420870-13421220 chr7:13534370-13536090 chr7:13565320-13565550 chr7:13388570-13389120 chr7:13403700-13404160 chr7:13495600-13495940 chr7:13534500-13535570 chr7:13622150-13622900 chr7:13387530-13389120 chr7:13508430-13509840 chr7:13611120-13612210 chr7:13622000-13622770 chr7:13565320-13565840 chr7:13403850-13404160 chr7:13534460-13535510 chr7:13594540-13595030 chr7:13639360-13639820 chr7:13388250-13389120 chr7:13534400-13535840 chr7:13639600-13639820 chr7:13388540-13389120 chr7:13507730-13507990 chr7:13534610-13535730 chr7:13563560-13564020 chr7:13639410-13639820 chr7:13379130-13379560 chr7:13388450-13389120 chr7:13403450-13404160 chr7:13494430-13496940 chr7:13533980-13536850 chr7:13508430-13509880 chr7:13565320-13566130 chr7:13388380-13389120 chr7:13420510-13420640 chr7:13507730-13508250 chr7:13534330-13536170 chr7:13611120-13612290 chr7:13622800-13622900 chr7:13565320-13565800 chr7:13388360-13389120 chr7:13494880-13496020 chr7:13534400-13535880 chr7:13572050-13573690 chr7:13622270-13622900 chr7:13563700-13564340 chr7:13388580-13389120 chr7:13403980-13404160 chr7:13508430-13508770 chr7:13534280-13535530 chr7:13613500-13613750 chr7:13622440-13622900 chr7:13487960-13488940 chr7:13489430-13489540 chr7:13565320-13565470 chr7:13507730-13508080 chr7:13534370-13535700 chr7:13610760-13610930 chr7:13639320-13639820 chr7:13388520-13389120 chr7:13403800-13404160 chr7:13488730-13488940 chr7:13508430-13508750 chr7:13534180-13535600 chr7:13563560-13564130 chr7:13565000-13565230 chr7:13592180-13592370 chr7:13639350-13639820 chr7:13708980-13709670 chr7:13466700-13466810 chr7:13565320-13565700 |
|
| Promoter: |
chr7:13022151-13026151 |
ChIP-seq based regulatory details of Trim28
| Sample ID | Experiment target | Biosample term name | Cell type | Tissue type | Source |
|---|---|---|---|---|---|
| TcoF_01_22238 | Trim28 | Neuro-2a | Neuroblastoma cell | None | Cistrome |
| TcoF_01_22237 | Trim28 | Neuro-2a | Neuroblastoma cell | None | Cistrome |
| TcoF_01_22236 | Trim28 | None | Embryonic Stem Cell | None | Cistrome |
| TcoF_01_22235 | Trim28 | None | Embryonic Stem Cell | None | Cistrome |
| TcoF_01_22234 | Trim28 | None | Embryonic Stem Cell | None | Cistrome |
| TcoF_01_22233 | Trim28 | None | Embryonic Stem Cell | None | Cistrome |
| TcoF_01_22232 | Trim28 | Hepa 1-6 | Epithelium | Liver | Cistrome |
| TcoF_01_22231 | Trim28 | None | Embryonic Stem Cell | None | Cistrome |
| TcoF_01_22230 | Trim28 | E14 | Embryonic Stem Cell | Embryo | Cistrome |
| TcoF_01_22229 | Trim28 | None | Embryonic Fibroblast | None | Cistrome |
| TcoF_01_22228 | Trim28 | None | Embryonic Fibroblast | None | Cistrome |
| TcoF_01_22227 | Trim28 | None | Embryonic Stem Cell | Embryo | Cistrome |
| TcoF_01_22226 | Trim28 | None | Embryonic Stem Cell | Embryo | Cistrome |
| TcoF_01_22225 | Trim28 | E14 | Embryonic Stem Cell | Embryo | Cistrome |
| TcoF_01_22224 | Trim28 | E14 | Embryonic Stem Cell | Embryo | Cistrome |
| TcoF_01_22223 | Trim28 | None | Embryonic Stem Cell | Embryo | Cistrome |
| TcoF_01_22222 | Trim28 | None | Embryonic Stem Cell | Embryo | Cistrome |
| TcoF_01_22221 | Trim28 | None | Embryonic Stem Cell | Embryo | Cistrome |
| TcoF_01_22220 | Trim28 | None | Embryonic Stem Cell | Embryo | Cistrome |
| TcoF_01_22219 | Trim28 | None | Embryonic Stem Cell | Embryo | Cistrome |
| TcoF_01_22218 | Trim28 | None | Embryonic Stem Cell | Embryo | Cistrome |
| TcoF_01_22217 | Trim28 | C2C12 | Myoblast | Muscle | Cistrome |
| TcoF_01_22216 | Trim28 | J1 | Embryonic Stem Cell | Embryo | Cistrome |
| TcoF_01_22215 | Trim28 | None | Erythroblast | Bone Marrow | Cistrome |
| TcoF_01_22214 | Trim28 | None | Pro-T Lymphocyte | None | Cistrome |
| TcoF_01_22213 | Trim28 | None | Pro-T Lymphocyte | None | Cistrome |
| TcoF_01_22212 | Trim28 | None | Embryonic Stem Cell | Embryo | Cistrome |
| TcoF_01_22211 | Trim28 | None | Embryonic Stem Cell | Embryo | Cistrome |
| TcoF_01_22210 | Trim28 | None | B Lymphocyte | Spleen | Cistrome |
| TcoF_01_22209 | Trim28 | None | B Lymphocyte | Spleen | Cistrome |
| TcoF_01_22208 | Trim28 | E14 | Embryonic Stem Cell | Embryo | Cistrome |
Downstream target genes of Trim28
Protein-protein interaction of Trim28
| OFFICIAL_SYMBOL_A | OFFICIAL_SYMBOL_B | EXPERIMENTAL_SYSTEM | PUBMED_ID | ORGANISM_A_ID | ORGANISM_B_ID | SOURCE |
|---|---|---|---|---|---|---|
| Trim28 | Zfp661 | Two-hybrid | 20211142 | 10090 | 10090 | BIOGRID |
| Trim28 | Cbx5 | Affinity Capture-Western | 15342492 | 10090 | 10090 | BIOGRID |
| Trim28 | Cbx1 | Affinity Capture-Western | 15342492 | 10090 | 10090 | BIOGRID |
| Trim28 | Cbx3 | Affinity Capture-Western | 15342492 | 10090 | 10090 | BIOGRID |
| Trim28 | Myb | Reconstituted Complex | 14761981 | 10090 | 10090 | BIOGRID |
| Trim28 | Cbx1 | Affinity Capture-Western | 17381543 | 10090 | 10090 | BIOGRID |
| Trim28 | Cbx5 | Affinity Capture-Western | 17381543 | 10090 | 10090 | BIOGRID |
| Trim28 | Cbx3 | Affinity Capture-Western | 17381543 | 10090 | 10090 | BIOGRID |
| Trim28 | Cbx1 | FRET | 17381543 | 10090 | 10090 | BIOGRID |
| Trim28 | Cbx3 | FRET | 17381543 | 10090 | 10090 | BIOGRID |
| Trim28 | FTH1 | Affinity Capture-MS | 20360068 | 10090 | 9606 | BIOGRID |
| Trim28 | C1QBP | Affinity Capture-MS | 20360068 | 10090 | 9606 | BIOGRID |
| Trim28 | DDB1 | Affinity Capture-MS | 20360068 | 10090 | 9606 | BIOGRID |
| Trim28 | RCN2 | Affinity Capture-MS | 20360068 | 10090 | 9606 | BIOGRID |
| Trim28 | ZNF331 | Affinity Capture-MS | 20360068 | 10090 | 9606 | BIOGRID |
| Trim28 | RBAK | Affinity Capture-MS | 20360068 | 10090 | 9606 | BIOGRID |
| Trim28 | CALU | Affinity Capture-MS | 20360068 | 10090 | 9606 | BIOGRID |
| Trim28 | POGK | Affinity Capture-MS | 20360068 | 10090 | 9606 | BIOGRID |
| Trim28 | IPO8 | Affinity Capture-MS | 20360068 | 10090 | 9606 | BIOGRID |
| Trim28 | ZNF124 | Affinity Capture-MS | 20360068 | 10090 | 9606 | BIOGRID |
| Trim28 | ZNF324 | Affinity Capture-MS | 20360068 | 10090 | 9606 | BIOGRID |
| Trim28 | TRIM28 | Affinity Capture-MS | 20360068 | 10090 | 9606 | BIOGRID |
| Trim28 | ZFP1 | Affinity Capture-MS | 20360068 | 10090 | 9606 | BIOGRID |
| Trim28 | ZNF566 | Affinity Capture-MS | 20360068 | 10090 | 9606 | BIOGRID |
| Trim28 | ZNF552 | Affinity Capture-MS | 20360068 | 10090 | 9606 | BIOGRID |
| Trim28 | ZNF250 | Affinity Capture-MS | 20360068 | 10090 | 9606 | BIOGRID |
| Trim28 | RCN1 | Affinity Capture-MS | 20360068 | 10090 | 9606 | BIOGRID |
| Trim28 | ZNF8 | Affinity Capture-MS | 20360068 | 10090 | 9606 | BIOGRID |
| Trim28 | ZNF460 | Affinity Capture-MS | 20360068 | 10090 | 9606 | BIOGRID |
| Trim28 | Cbx5 | Biochemical Activity | 10562550 | 10090 | 10090 | BIOGRID |
| Trim28 | Cbx1 | Biochemical Activity | 10562550 | 10090 | 10090 | BIOGRID |
| Trim28 | Cbx3 | Biochemical Activity | 10562550 | 10090 | 10090 | BIOGRID |
| Trim28 | Trim28 | Biochemical Activity | 10562550 | 10090 | 10090 | BIOGRID |
| Trim28 | Cbx5 | Affinity Capture-Western | 10562550 | 10090 | 10090 | BIOGRID |
| Trim28 | Cbx1 | Affinity Capture-Western | 10562550 | 10090 | 10090 | BIOGRID |
| Trim28 | Cbx3 | Affinity Capture-Western | 10562550 | 10090 | 10090 | BIOGRID |
| Trim28 | Sertad1 | Two-hybrid | 11331592 | 10090 | 10090 | BIOGRID |
| Trim28 | Sertad1 | Affinity Capture-Western | 11331592 | 10090 | 10090 | BIOGRID |
| Trim28 | SERTAD2 | Affinity Capture-Western | 11331592 | 10090 | 9606 | BIOGRID |
| Trim28 | Cbx5 | Two-hybrid | 10562550 | 10090 | 10090 | BIOGRID |
| Trim28 | Cbx1 | Two-hybrid | 10562550 | 10090 | 10090 | BIOGRID |
| Trim28 | Cbx3 | Two-hybrid | 10562550 | 10090 | 10090 | BIOGRID |
| Trim28 | Pim3 | Affinity Capture-Western | 28983112 | 10090 | 10090 | BIOGRID |
| Trim28 | Hnrnpab | Co-fractionation | 32325033 | 10090 | 10090 | BIOGRID |
| Trim28 | Sfpq | Co-fractionation | 32325033 | 10090 | 10090 | BIOGRID |
| Trim28 | Pcna | Co-localization | 29955894 | 10090 | 10090 | BIOGRID |
| Trim28 | Cbx5 | Co-localization | 29955894 | 10090 | 10090 | BIOGRID |
| Trim28 | Mcm6 | Reconstituted Complex | 29955894 | 10090 | 10090 | BIOGRID |
Annotation of Trim28
Expression of Trim28
Disease information of Trim28