TcoBase-Search

TcoF overview

TcoF:	SMARCB1
GeneID:	6603
Name:	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Ensembl:	ENSG00000099956
Species:	Human
Class:	NA
Family:	SWI/SNF
Disease:	11
Go term:	34
Pathway:	5
Hallmark:	2
Super Enhancer:	chr22:24114949-24139500
Enhancer:	chr22:24109780-24110020 chr22:24123290-24123370 chr22:24123600-24124150 chr22:24448850-24451330 chr22:24180960-24181080 chr22:24237720-24238010 chr22:24057380-24059210 chr22:24314750-24315950 chr22:24037700-24038800 chr22:24038880-24039350 chr22:24105520-24106270 chr22:24108480-24109560 chr22:24180630-24180750 chr22:24143270-24145480 chr22:24180040-24180530 chr22:24180820-24180890 chr22:24134080-24135740 chr22:24528810-24530260 chr22:24016960-24018870 chr22:24026060-24028050 chr22:24091120-24092890 chr22:24163980-24165190 chr22:24463130-24464650 chr22:24464730-24466750 chr22:24309210-24309570 chr22:24316130-24316490 chr22:24106580-24106820 chr22:24106900-24106970 chr22:24138420-24139200 chr22:23955510-23955820 chr22:23955840-23956260 chr22:24039430-24040020 chr22:24078100-24078780 chr22:24687060-24688420 chr22:23932920-23935280 chr22:24179340-24179840 chr22:24145610-24147680 chr22:24107090-24107900 chr22:24137280-24138100 chr22:24170430-24172840 chr22:24373250-24373600 chr22:24383080-24384110 chr22:24454760-24455680 chr22:24455830-24456380 chr22:24456600-24458400 chr22:24602420-24604850 chr22:24605390-24606630 chr22:24666950-24669260 chr22:24678970-24679380 chr22:24680500-24682210 chr22:24684200-24686400 chr22:24132740-24133940 chr22:24788320-24789150 chr22:24200220-24202290 chr22:24359290-24361700 chr22:24043030-24043390 chr22:24379510-24381210 chr22:24481720-24483400 chr22:24485360-24487530 chr22:24515670-24517270 chr22:24108210-24108310 chr22:24175080-24175640 chr22:24250250-24251550 chr22:24432630-24434790 chr22:24434910-24436450 chr22:24538960-24539530 chr22:24577560-24579020 chr22:24983980-24984180 chr22:23524430-23526610 chr22:23533260-23535380 chr22:23842680-23843440 chr22:23858450-23858920 chr22:23859030-23859850 chr22:24720420-24722380 chr22:23526710-23527640 chr22:24035180-24035940 chr22:24106360-24106440 chr22:23952530-23952920 chr22:24040040-24040390 chr22:24040520-24041030 chr22:24046330-24047610 chr22:24047730-24049120 chr22:24049560-24051310
Promoter:	chr22:24129118-24180195

Sample ID	Experiment target	Biosample type	Biosample term name	GSM ID	Tissue type	Source
TcoF_00_30484	SMARCB1	cell line	Hep G2	GSM1704017	Liver	ChIP-Atlas
TcoF_00_40920	SMARCB1	cell line	Hep-G2	GSM1704017	Liver	ReMap
TcoF_00_30485	SMARCB1	cell line	Hep G2	GSM1704018	Liver	ChIP-Atlas
TcoF_00_31114	SMARCB1	cell line	RWPE-1	GSM3140975	Prostate	ChIP-Atlas
TcoF_00_31115	SMARCB1	cell line	RWPE-1	GSM3140976	Prostate	ChIP-Atlas
TcoF_00_30385	SMARCB1	cell line	HeLa	GSM601398	Uterus	ChIP-Atlas
TcoF_00_30568	SMARCB1	cell line	NCCIT	GSM881709	Embryo	ChIP-Atlas
TcoF_00_30569	SMARCB1	cell line	NCCIT	GSM881711	Embryo	ChIP-Atlas
TcoF_00_30631	SMARCB1	cell line	K-562	GSM935634	Bone Marrow	ChIP-Atlas
TcoF_00_40064	SMARCB1	cell line	K-562	GSM935634	Bone Marrow	ReMap
TcoF_00_30632	SMARCB1	cell line	HeLa	GSM935635	Uterus	ChIP-Atlas
TcoF_00_40057	SMARCB1	cell line	HeLa-S3	GSM935635	Uterus	ReMap

Protein-protein interaction of SMARCB1

OFFICIAL_SYMBOL_A	OFFICIAL_SYMBOL_B	EXPERIMENTAL_SYSTEM	PUBMED_ID	ORGANISM_A_ID	ORGANISM_B_ID	SOURCE
SMARCB1	SMARCA2	Co-purification	11238380	9606	9606	BIOGRID
SMARCB1	SMARCA4	Co-purification	11238380	9606	9606	BIOGRID
SMARCB1	SMARCC1	Co-purification	11238380	9606	9606	BIOGRID
SMARCB1	SIN3A	Co-purification	11238380	9606	9606	BIOGRID
SMARCB1	HDAC1	Co-purification	11238380	9606	9606	BIOGRID
SMARCB1	HDAC2	Co-purification	11238380	9606	9606	BIOGRID
SMARCB1	RBBP4	Co-purification	11238380	9606	9606	BIOGRID
SMARCB1	POLR2A	Co-purification	11238380	9606	9606	BIOGRID
SMARCB1	MYC	Two-hybrid	10319872	9606	9606	BIOGRID
SMARCB1	MYC	Affinity Capture-Western	10319872	9606	9606	BIOGRID
SMARCB1	TP53	Reconstituted Complex	11950834	9606	9606	BIOGRID
SMARCB1	XPO1	Affinity Capture-Western	11782423	9606	9606	BIOGRID
SMARCB1	XPO1	Reconstituted Complex	11782423	9606	9606	BIOGRID
SMARCB1	RAN	Reconstituted Complex	11782423	9606	9606	BIOGRID
SMARCB1	BRCA1	Co-purification	10943845	9606	9606	BIOGRID
SMARCB1	SMARCB1	Co-purification	10943845	9606	9606	BIOGRID
SMARCB1	SMARCA4	Co-fractionation	11486022	9606	9606	BIOGRID
SMARCB1	HSF1	Co-fractionation	11486022	9606	9606	BIOGRID
SMARCB1	SS18	Affinity Capture-Western	11734557	9606	9606	BIOGRID
SMARCB1	SS18	Affinity Capture-MS	11734557	9606	9606	BIOGRID
SMARCB1	ARID1A	Affinity Capture-MS	11734557	9606	9606	BIOGRID
SMARCB1	ARID1B	Affinity Capture-MS	11734557	9606	9606	BIOGRID
SMARCB1	ARID1A	Co-purification	8895581	9606	9606	BIOGRID
SMARCB1	SMARCA4	Co-purification	8895581	9606	9606	BIOGRID
SMARCB1	SMARCA2	Co-purification	8895581	9606	9606	BIOGRID
SMARCB1	SMARCC2	Co-purification	8895581	9606	9606	BIOGRID
SMARCB1	SMARCC1	Co-purification	8895581	9606	9606	BIOGRID
SMARCB1	POLR2A	Co-purification	8895581	9606	9606	BIOGRID
SMARCB1	SMARCE1	Co-purification	8895581	9606	9606	BIOGRID
SMARCB1	ACTL6A	Co-purification	8895581	9606	9606	BIOGRID
SMARCB1	PPP1R15A	Reconstituted Complex	10490642	9606	9606	BIOGRID
SMARCB1	PPP1CA	Reconstituted Complex	12016208	9606	9606	BIOGRID
SMARCB1	PPP1CB	Reconstituted Complex	12016208	9606	9606	BIOGRID
SMARCB1	PPP1CC	Reconstituted Complex	12016208	9606	9606	BIOGRID
SMARCB1	PPP1CA	Affinity Capture-Western	12016208	9606	9606	BIOGRID
SMARCB1	PPP1CB	Affinity Capture-Western	12016208	9606	9606	BIOGRID
SMARCB1	PPP1CC	Affinity Capture-Western	12016208	9606	9606	BIOGRID
SMARCB1	XPC	Co-localization	19805520	9606	9606	BIOGRID
SMARCB1	ATM	Affinity Capture-Western	19805520	9606	9606	BIOGRID
SMARCB1	KMT2C	Reconstituted Complex	19221051	9606	9606	BIOGRID
SMARCB1	KMT2B	Reconstituted Complex	19221051	9606	9606	BIOGRID
SMARCB1	KMT2C	Two-hybrid	19221051	9606	9606	BIOGRID
SMARCB1	ARID1A	Affinity Capture-Western	19650111	9606	9606	BIOGRID
SMARCB1	SMARCC2	Affinity Capture-Western	19650111	9606	9606	BIOGRID
SMARCB1	SMARCC1	Affinity Capture-Western	19650111	9606	9606	BIOGRID
SMARCB1	SMARCE1	Affinity Capture-Western	18809673	9606	9606	BIOGRID
SMARCB1	SMARCC1	Affinity Capture-Western	18809673	9606	9606	BIOGRID
SMARCB1	SMARCA4	Affinity Capture-Western	18809673	9606	9606	BIOGRID
SMARCB1	SMARCE1	Affinity Capture-MS	18809673	9606	9606	BIOGRID
SMARCB1	SMARCC1	Affinity Capture-MS	18809673	9606	9606	BIOGRID
SMARCB1	SMARCA4	Affinity Capture-MS	18809673	9606	9606	BIOGRID
SMARCB1	AKT1	Affinity Capture-Western	16568092	9606	9606	BIOGRID
SMARCB1	ACTA1	Affinity Capture-Western	16568092	9606	9606	BIOGRID
SMARCB1	SMARCC1	Affinity Capture-Western	16568092	9606	9606	BIOGRID
SMARCB1	AKT1	Reconstituted Complex	16568092	9606	9606	BIOGRID
SMARCB1	PRMT5	Reconstituted Complex	14559996	9606	9606	BIOGRID
SMARCB1	SMARCA4	Affinity Capture-Western	18414052	9606	9606	BIOGRID
SMARCB1	SMARCA4	Affinity Capture-Western	15150092	9606	9606	BIOGRID
SMARCB1	SMARCC1	Affinity Capture-Western	15150092	9606	9606	BIOGRID
SMARCB1	SMARCC2	Affinity Capture-Western	15150092	9606	9606	BIOGRID
SMARCB1	SMARCA4	Co-purification	9744861	9606	9606	BIOGRID
SMARCB1	SMARCA2	Co-purification	9744861	9606	9606	BIOGRID
SMARCB1	SMARCC1	Co-purification	9744861	9606	9606	BIOGRID
SMARCB1	RB1CC1	Affinity Capture-Western	20614030	9606	9606	BIOGRID
SMARCB1	SMARCA4	Affinity Capture-Western	20506188	9606	9606	BIOGRID
SMARCB1	RUNX1	Affinity Capture-Western	20506188	9606	9606	BIOGRID
SMARCB1	ARID2	Affinity Capture-Western	15985610	9606	9606	BIOGRID
SMARCB1	SMARCA4	Affinity Capture-Western	16687403	9606	9606	BIOGRID
SMARCB1	CHFR	Affinity Capture-Western	22285184	9606	9606	BIOGRID
SMARCB1	RB1CC1	Affinity Capture-Western	21637919	9606	9606	BIOGRID
SMARCB1	APP	Reconstituted Complex	21832049	9606	9606	BIOGRID
SMARCB1	TOP2B	Co-fractionation	22939629	9606	9606	BIOGRID
SMARCB1	VTN	Co-fractionation	22939629	9606	9606	BIOGRID
SMARCB1	TRA2A	Co-fractionation	22939629	9606	9606	BIOGRID
SMARCB1	SON	Co-fractionation	22939629	9606	9606	BIOGRID
SMARCB1	SMARCB1	Reconstituted Complex	23861745	9606	9606	BIOGRID
SMARCB1	ACTL6A	Co-fractionation	26344197	9606	9606	BIOGRID
SMARCB1	ARID1A	Co-fractionation	26344197	9606	9606	BIOGRID
SMARCB1	ARID1B	Co-fractionation	26344197	9606	9606	BIOGRID
SMARCB1	BCL7A	Co-fractionation	26344197	9606	9606	BIOGRID
SMARCB1	BCL7B	Co-fractionation	26344197	9606	9606	BIOGRID
SMARCB1	CHMP4A	Co-fractionation	26344197	9606	9606	BIOGRID
SMARCB1	CPSF6	Co-fractionation	26344197	9606	9606	BIOGRID
SMARCB1	DPF2	Co-fractionation	26344197	9606	9606	BIOGRID
SMARCB1	DPF3	Co-fractionation	26344197	9606	9606	BIOGRID
SMARCB1	SMARCD1	Co-fractionation	26344197	9606	9606	BIOGRID
SMARCB1	SMARCD2	Co-fractionation	26344197	9606	9606	BIOGRID
SMARCB1	SMARCD3	Co-fractionation	26344197	9606	9606	BIOGRID
SMARCB1	SS18	Co-fractionation	26344197	9606	9606	BIOGRID
SMARCB1	TBL1X	Co-fractionation	26344197	9606	9606	BIOGRID
SMARCB1	TBL1XR1	Co-fractionation	26344197	9606	9606	BIOGRID
SMARCB1	BRCA1	Affinity Capture-Western	27591253	9606	9606	BIOGRID
SMARCB1	BARD1	Affinity Capture-Western	27591253	9606	9606	BIOGRID
SMARCB1	VHL	Negative Genetic	28319113	9606	9606	BIOGRID
SMARCB1	ABI2	Two-hybrid	27229929	9606	9606	BIOGRID
SMARCB1	AES	Two-hybrid	27229929	9606	9606	BIOGRID
SMARCB1	ARL11	Two-hybrid	27229929	9606	9606	BIOGRID
SMARCB1	ATP5A1	Two-hybrid	27229929	9606	9606	BIOGRID
SMARCB1	DPH6	Two-hybrid	27229929	9606	9606	BIOGRID
SMARCB1	BHLHE40	Two-hybrid	27229929	9606	9606	BIOGRID
SMARCB1	BLZF1	Two-hybrid	27229929	9606	9606	BIOGRID
SMARCB1	FAM208B	Two-hybrid	27229929	9606	9606	BIOGRID
SMARCB1	CAMK2D	Two-hybrid	27229929	9606	9606	BIOGRID
SMARCB1	CCDC120	Two-hybrid	27229929	9606	9606	BIOGRID
SMARCB1	CCDC33	Two-hybrid	27229929	9606	9606	BIOGRID
SMARCB1	CCDC36	Two-hybrid	27229929	9606	9606	BIOGRID
SMARCB1	CD69	Two-hybrid	27229929	9606	9606	BIOGRID
SMARCB1	CDC23	Two-hybrid	27229929	9606	9606	BIOGRID
SMARCB1	CXCL11	Two-hybrid	27229929	9606	9606	BIOGRID
SMARCB1	CYB5D2	Two-hybrid	27229929	9606	9606	BIOGRID
SMARCB1	DNAJA3	Two-hybrid	27229929	9606	9606	BIOGRID
SMARCB1	FAM154A	Two-hybrid	27229929	9606	9606	BIOGRID
SMARCB1	FAM9B	Two-hybrid	27229929	9606	9606	BIOGRID
SMARCB1	GFAP	Two-hybrid	27229929	9606	9606	BIOGRID
SMARCB1	GOLGA2	Two-hybrid	27229929	9606	9606	BIOGRID
SMARCB1	HNRNPM	Two-hybrid	27229929	9606	9606	BIOGRID
SMARCB1	HOMEZ	Two-hybrid	27229929	9606	9606	BIOGRID
SMARCB1	HOOK2	Two-hybrid	27229929	9606	9606	BIOGRID
SMARCB1	HSFY1	Two-hybrid	27229929	9606	9606	BIOGRID
SMARCB1	IKZF3	Two-hybrid	27229929	9606	9606	BIOGRID
SMARCB1	KCTD9	Two-hybrid	27229929	9606	9606	BIOGRID
SMARCB1	KLC3	Two-hybrid	27229929	9606	9606	BIOGRID
SMARCB1	KPNA6	Two-hybrid	27229929	9606	9606	BIOGRID
SMARCB1	KRT15	Two-hybrid	27229929	9606	9606	BIOGRID
SMARCB1	KRT19	Two-hybrid	27229929	9606	9606	BIOGRID
SMARCB1	KRT6A	Two-hybrid	27229929	9606	9606	BIOGRID
SMARCB1	KRT6B	Two-hybrid	27229929	9606	9606	BIOGRID
SMARCB1	KRT6C	Two-hybrid	27229929	9606	9606	BIOGRID
SMARCB1	LDOC1	Two-hybrid	27229929	9606	9606	BIOGRID
SMARCB1	LENG8	Two-hybrid	27229929	9606	9606	BIOGRID
SMARCB1	LNX2	Two-hybrid	27229929	9606	9606	BIOGRID
SMARCB1	LY96	Two-hybrid	27229929	9606	9606	BIOGRID
SMARCB1	LZTS2	Two-hybrid	27229929	9606	9606	BIOGRID
SMARCB1	MBIP	Two-hybrid	27229929	9606	9606	BIOGRID
SMARCB1	MIF4GD	Two-hybrid	27229929	9606	9606	BIOGRID
SMARCB1	MXI1	Two-hybrid	27229929	9606	9606	BIOGRID
SMARCB1	NCK2	Two-hybrid	27229929	9606	9606	BIOGRID
SMARCB1	OSGIN1	Two-hybrid	27229929	9606	9606	BIOGRID
SMARCB1	OTX2	Two-hybrid	27229929	9606	9606	BIOGRID
SMARCB1	RINT1	Two-hybrid	27229929	9606	9606	BIOGRID
SMARCB1	RXRA	Two-hybrid	27229929	9606	9606	BIOGRID
SMARCB1	SMARCB1	Two-hybrid	27229929	9606	9606	BIOGRID
SMARCB1	TEKT5	Two-hybrid	27229929	9606	9606	BIOGRID
SMARCB1	TFIP11	Two-hybrid	27229929	9606	9606	BIOGRID
SMARCB1	TNFAIP1	Two-hybrid	27229929	9606	9606	BIOGRID
SMARCB1	TNRC6A	Two-hybrid	27229929	9606	9606	BIOGRID
SMARCB1	TRIM27	Two-hybrid	27229929	9606	9606	BIOGRID
SMARCB1	TSC22D4	Two-hybrid	27229929	9606	9606	BIOGRID
SMARCB1	VIM	Two-hybrid	27229929	9606	9606	BIOGRID
SMARCB1	ZC3H11A	Two-hybrid	27229929	9606	9606	BIOGRID
SMARCB1	ZNF398	Two-hybrid	27229929	9606	9606	BIOGRID
SMARCB1	CABIN1	Affinity Capture-Western	23602572	9606	9606	BIOGRID
SMARCB1	HIRA	Affinity Capture-Western	23602572	9606	9606	BIOGRID
SMARCB1	SMARCA4	Affinity Capture-Western	23602572	9606	9606	BIOGRID
SMARCB1	UBN1	Affinity Capture-Western	23602572	9606	9606	BIOGRID
SMARCB1	ASF1A	Affinity Capture-Western	23602572	9606	9606	BIOGRID
SMARCB1	RPN1	Two-hybrid	30178299	9606	9606	BIOGRID
SMARCB1	SMARCB1	Two-hybrid	30178299	9606	9606	BIOGRID
SMARCB1	WDR5	Negative Genetic	28481362	9606	9606	BIOGRID
SMARCB1	SRCAP	Negative Genetic	28481362	9606	9606	BIOGRID
SMARCB1	SMARCA4	Affinity Capture-Western	29374058	9606	9606	BIOGRID
SMARCB1	SMARCC2	Affinity Capture-Western	29374058	9606	9606	BIOGRID
SMARCB1	SMARCB1	Affinity Capture-Western	29374058	9606	9606	BIOGRID
SMARCB1	PICK1	Two-hybrid	32296183	9606	9606	BIOGRID
SMARCB1	TRIM35	Two-hybrid	32296183	9606	9606	BIOGRID
SMARCB1	AES	Two-hybrid	32296183	9606	9606	BIOGRID
SMARCB1	MESDC2	Two-hybrid	32296183	9606	9606	BIOGRID
SMARCB1	PRKAB2	Two-hybrid	32296183	9606	9606	BIOGRID
SMARCB1	SMARCC2	Two-hybrid	32296183	9606	9606	BIOGRID
SMARCB1	HSF2BP	Two-hybrid	32296183	9606	9606	BIOGRID
SMARCB1	RUSC1	Two-hybrid	32296183	9606	9606	BIOGRID
SMARCB1	FAM90A1	Two-hybrid	32296183	9606	9606	BIOGRID
SMARCB1	IL16	Two-hybrid	32296183	9606	9606	BIOGRID
SMARCB1	FAM9B	Two-hybrid	32296183	9606	9606	BIOGRID
SMARCB1	HGS	Two-hybrid	32296183	9606	9606	BIOGRID
SMARCB1	MRPL53	Two-hybrid	32296183	9606	9606	BIOGRID
SMARCB1	ZNF688	Two-hybrid	32296183	9606	9606	BIOGRID
SMARCB1	SMARCC1	Affinity Capture-MS	24981860	9606	9606	BIOGRID
SMARCB1	SMARCD1	Affinity Capture-MS	24981860	9606	9606	BIOGRID
SMARCB1	BCL7C	Affinity Capture-MS	24981860	9606	9606	BIOGRID
SMARCB1	SMARCD3	Affinity Capture-MS	24981860	9606	9606	BIOGRID
SMARCB1	SMARCA4	Affinity Capture-MS	24981860	9606	9606	BIOGRID
SMARCB1	ARID1B	Affinity Capture-MS	24981860	9606	9606	BIOGRID
SMARCB1	BCL7A	Affinity Capture-MS	24981860	9606	9606	BIOGRID
SMARCB1	BRD7	Affinity Capture-MS	24981860	9606	9606	BIOGRID
SMARCB1	SS18	Affinity Capture-MS	24981860	9606	9606	BIOGRID
SMARCB1	SS18L1	Affinity Capture-MS	24981860	9606	9606	BIOGRID
SMARCB1	PBRM1	Affinity Capture-MS	24981860	9606	9606	BIOGRID
SMARCB1	DPF1	Affinity Capture-MS	24981860	9606	9606	BIOGRID
SMARCB1	PHF10	Affinity Capture-MS	24981860	9606	9606	BIOGRID
SMARCB1	BRD9	Affinity Capture-MS	24981860	9606	9606	BIOGRID
SMARCB1	GLTSCR1	Affinity Capture-MS	24981860	9606	9606	BIOGRID
SMARCB1	ACTC1	Affinity Capture-MS	24981860	9606	9606	BIOGRID
SMARCB1	BCL7B	Affinity Capture-MS	24981860	9606	9606	BIOGRID
SMARCB1	AMY1A	Affinity Capture-MS	24981860	9606	9606	BIOGRID
SMARCB1	Myc	Reconstituted Complex	10319872	9606	10090	BIOGRID
SMARCB1	tat	Affinity Capture-Western	16889668	9606	11676	BIOGRID
SMARCB1	tat	Reconstituted Complex	16687403	9606	11676	BIOGRID
SMARCB1	UL114	Reconstituted Complex	22479537	9606	10359	BIOGRID
SMARCB1	UL44	Affinity Capture-Western	22479537	9606	10359	BIOGRID
SMARCB1	UL44	Reconstituted Complex	22479537	9606	10359	BIOGRID
SMARCB1	tat	Affinity Capture-Western	16601680	9606	11676	BIOGRID

ACC
BLCA
BRCA
CESC
CHOL
COAD
DLBC
ESCA
GBM
HNSC
KICH
KIRC
KIRP
LAML
LGG
LIHC
LUAD
LUSC
MESO
OV
PAAD
PCPG
PRAD
READ
SARC
SKCM
STAD
TGCT
THCA
THYM
UCEC
UCS
UVM