TcoF overview
TcoF: KDM4A
GeneID: 123169
Name: Lysine-specific demethylase 4A
Ensembl: ENSG00000066135
Species: Human
Class: class HC
Family: Lysine demethylase
Disease: 0
Go term: 17
Pathway: 2
Hallmark: --
Super Enhancer:

chr1:44035190-44089319 chr1:43995837-44069763 chr1:43971699-44091647 chr1:44097707-44116862 chr1:44105376-44126966

Enhancer:

chr1:43815030-43817420 chr1:43825070-43825160 chr1:44115920-44118380 chr1:44185470-44186140 chr1:44154770-44156280 chr1:44133690-44134770 chr1:44035450-44037400 chr1:44067760-44069080 chr1:44458060-44458190 chr1:43812610-43814510 chr1:44457680-44457880 chr1:43814670-43814930 chr1:44042620-44044060 chr1:43824680-43824830 chr1:44286790-44289290 chr1:44323980-44325120 chr1:44457420-44457510 chr1:44118980-44121260 chr1:44129250-44131100 chr1:44297410-44299290 chr1:44296280-44296950 chr1:43649550-43650810 chr1:43749040-43751110 chr1:43884260-43885400 chr1:44124400-44125960 chr1:44126080-44126860 chr1:44055480-44056640 chr1:44399930-44401260 chr1:43879270-43880750 chr1:43697840-43698170 chr1:43698300-43699940 chr1:43783740-43784350 chr1:43786370-43786930 chr1:43786980-43787060 chr1:43787160-43787280 chr1:43787390-43788320 chr1:43825490-43825630 chr1:43860480-43862420 chr1:43885620-43885820 chr1:43888560-43888760 chr1:43888990-43889880 chr1:44458310-44459550 chr1:44459640-44460770 chr1:44460840-44461270 chr1:44446290-44446780 chr1:43396880-43399170 chr1:43670260-43672390 chr1:43672600-43674670 chr1:43739670-43741660 chr1:43825310-43825390 chr1:43825770-43825860 chr1:43828870-43829060 chr1:43901000-43902840 chr1:43935680-43937050 chr1:43937250-43939570 chr1:43958300-43958910 chr1:43959280-43960410 chr1:44134970-44137170 chr1:44137550-44137990 chr1:44152840-44154580 chr1:44184800-44185350 chr1:44241530-44242880 chr1:44251810-44253170 chr1:44261440-44262220 chr1:44265250-44266710 chr1:44309420-44310350 chr1:44323620-44323800 chr1:44326320-44328540 chr1:44344070-44345000 chr1:44345180-44346520 chr1:44399560-44399780 chr1:44413360-44415080 chr1:44490040-44491210 chr1:44550660-44551880 chr1:44679530-44680020 chr1:43940980-43942510 chr1:44333570-44335820 chr1:43700310-43702350 chr1:44339710-44340110 chr1:44509810-44510410 chr1:43809760-43812110 chr1:43483640-43484880 chr1:43600690-43602390 chr1:43602560-43604440 chr1:43664320-43665060 chr1:44132760-44133440 chr1:44447150-44447360 chr1:44447600-44449660 chr1:43613760-43614950 chr1:43514000-43516400 chr1:44071290-44071910 chr1:44132230-44132620 chr1:43124180-43124510 chr1:43124580-43124890 chr1:43124920-43125190 chr1:43148400-43149070 chr1:43159190-43159770 chr1:43392910-43393270 chr1:43393480-43394600 chr1:43394700-43394880 chr1:43394990-43395260 chr1:43395450-43395540 chr1:43395710-43396290 chr1:43408990-43411460 chr1:43411690-43412740 chr1:43413390-43414300 chr1:43414590-43416970 chr1:43431000-43431520 chr1:43437000-43438410 chr1:43438570-43439640 chr1:43443660-43445160 chr1:43445260-43447720 chr1:43457650-43458790 chr1:43458870-43460150 chr1:43461840-43463090 chr1:43475980-43476800 chr1:43478340-43478970 chr1:43496250-43497950 chr1:43721270-43723680 chr1:43735760-43736350 chr1:43736460-43737850 chr1:43742360-43743770 chr1:43779640-43779950 chr1:43826060-43826160 chr1:43826260-43826400 chr1:43826630-43826790 chr1:43827980-43828620 chr1:43829810-43829990 chr1:43830130-43830210 chr1:43996760-43999200 chr1:44001650-44003760 chr1:44010500-44010700 chr1:44015390-44017390 chr1:43417280-43419720 chr1:43711030-43712840 chr1:43826920-43827860 chr1:44072130-44072480 chr1:43665180-43667590 chr1:44017820-44019160 chr1:44131410-44132120 chr1:44338010-44338300 chr1:44380660-44381060 chr1:44389650-44391260 chr1:44401390-44401740 chr1:44401900-44401970 chr1:44350150-44351960 chr1:44461340-44461440 chr1:44463410-44463520 chr1:44506860-44508730 chr1:44231350-44233330 chr1:44346640-44347420 chr1:44057620-44058120 chr1:44121730-44121990 chr1:44244850-44245970 chr1:44247270-44248000 chr1:44478660-44479380 chr1:44479700-44480160 chr1:44451290-44452280 chr1:44480230-44480720 chr1:44069200-44069280 chr1:44463700-44464300 chr1:43525670-43527070 chr1:43943310-43943710 chr1:44491350-44492660

Promoter:

chr1:44115820-44171189

 ChIP-seq based regulatory details of KDM4A
Sample ID Experiment target Biosample type Biosample term name GSM ID Tissue type Source
TcoF_00_20308 KDM4A cell line H1 GSM1003479 Embryo Cistrome
TcoF_00_40376 KDM4A cell line WA01 GSM1003479 None ReMap
TcoF_00_20182 KDM4A cell breast triple negative tumor cell line BCSC1 GSM2498494 Breast Cistrome
TcoF_00_20181 KDM4A cell breast triple negative tumor cell line BCSC1 GSM2498496 Breast Cistrome
TcoF_00_20317 KDM4A cell line H1 GSM831035 Embryo Cistrome
 Downstream target genes of KDM4A
 Protein-protein interaction of KDM4A
OFFICIAL_SYMBOL_A OFFICIAL_SYMBOL_B EXPERIMENTAL_SYSTEM PUBMED_ID ORGANISM_A_ID ORGANISM_B_ID SOURCE
KDM4A KDM4A Affinity Capture-Western 17207460 9606 9606 BIOGRID
KDM4A KDM4C Affinity Capture-Western 17207460 9606 9606 BIOGRID
KDM4A HIST1H3A Biochemical Activity 16732292 9606 9606 BIOGRID
KDM4A HIST1H3A Co-crystal Structure 16601153 9606 9606 BIOGRID
KDM4A HIST1H3A Protein-peptide 16601153 9606 9606 BIOGRID
KDM4A NCOR1 Affinity Capture-Western 16024779 9606 9606 BIOGRID
KDM4A NCOR1 Reconstituted Complex 16024779 9606 9606 BIOGRID
KDM4A NCOR1 Co-localization 16024779 9606 9606 BIOGRID
KDM4A HDAC1 Affinity Capture-Western 15927959 9606 9606 BIOGRID
KDM4A HDAC3 Affinity Capture-Western 15927959 9606 9606 BIOGRID
KDM4A RB1 Affinity Capture-Western 15927959 9606 9606 BIOGRID
KDM4A RB1 Two-hybrid 15927959 9606 9606 BIOGRID
KDM4A AR Affinity Capture-Western 17555712 9606 9606 BIOGRID
KDM4A HIST1H4A Protein-peptide 17190600 9606 9606 BIOGRID
KDM4A H3F3A Co-crystal Structure 21931800 9606 9606 BIOGRID
KDM4A CUL1 Affinity Capture-Western 21757720 9606 9606 BIOGRID
KDM4A FBXL4 Affinity Capture-Western 21757720 9606 9606 BIOGRID
KDM4A CAPZA1 Co-fractionation 26344197 9606 9606 BIOGRID
KDM4A PRMT5 Negative Genetic 26864203 9606 9606 BIOGRID
KDM4A S100A9 Affinity Capture-MS 24981860 9606 9606 BIOGRID
KDM4A H3F3A Biochemical Activity 16603238 9606 9913 BIOGRID
 Annotation of KDM4A
 TCGA cancer survival map of KDM4A


Calculate the hazards ratio based on Cox PH Model.
Add the 95% CI as dotted line.
Reset Add The plot axis-x order will follow the list.


Calculate the hazards ratio based on Cox PH Model.
We use log2(TPM + 1) for log-scale.
All Add
Reset The plot is based on the datasets of list.


 Disease information of  KDM4A