TcoF: | KDM4A | |
GeneID: | 123169 | |
Name: | Lysine-specific demethylase 4A | |
Ensembl: | ENSG00000066135 | |
Species: | Human | |
Class: | class HC | |
Family: | Lysine demethylase | |
Disease: | 0 | |
Go term: | 17 | |
Pathway: | 2 | |
Hallmark: | -- | |
Super Enhancer: |
chr1:44035190-44089319 chr1:43995837-44069763 chr1:43971699-44091647 chr1:44097707-44116862 chr1:44105376-44126966 |
|
Enhancer: |
chr1:43815030-43817420 chr1:43825070-43825160 chr1:44115920-44118380 chr1:44185470-44186140 chr1:44154770-44156280 chr1:44133690-44134770 chr1:44035450-44037400 chr1:44067760-44069080 chr1:44458060-44458190 chr1:43812610-43814510 chr1:44457680-44457880 chr1:43814670-43814930 chr1:44042620-44044060 chr1:43824680-43824830 chr1:44286790-44289290 chr1:44323980-44325120 chr1:44457420-44457510 chr1:44118980-44121260 chr1:44129250-44131100 chr1:44297410-44299290 chr1:44296280-44296950 chr1:43649550-43650810 chr1:43749040-43751110 chr1:43884260-43885400 chr1:44124400-44125960 chr1:44126080-44126860 chr1:44055480-44056640 chr1:44399930-44401260 chr1:43879270-43880750 chr1:43697840-43698170 chr1:43698300-43699940 chr1:43783740-43784350 chr1:43786370-43786930 chr1:43786980-43787060 chr1:43787160-43787280 chr1:43787390-43788320 chr1:43825490-43825630 chr1:43860480-43862420 chr1:43885620-43885820 chr1:43888560-43888760 chr1:43888990-43889880 chr1:44458310-44459550 chr1:44459640-44460770 chr1:44460840-44461270 chr1:44446290-44446780 chr1:43396880-43399170 chr1:43670260-43672390 chr1:43672600-43674670 chr1:43739670-43741660 chr1:43825310-43825390 chr1:43825770-43825860 chr1:43828870-43829060 chr1:43901000-43902840 chr1:43935680-43937050 chr1:43937250-43939570 chr1:43958300-43958910 chr1:43959280-43960410 chr1:44134970-44137170 chr1:44137550-44137990 chr1:44152840-44154580 chr1:44184800-44185350 chr1:44241530-44242880 chr1:44251810-44253170 chr1:44261440-44262220 chr1:44265250-44266710 chr1:44309420-44310350 chr1:44323620-44323800 chr1:44326320-44328540 chr1:44344070-44345000 chr1:44345180-44346520 chr1:44399560-44399780 chr1:44413360-44415080 chr1:44490040-44491210 chr1:44550660-44551880 chr1:44679530-44680020 chr1:43940980-43942510 chr1:44333570-44335820 chr1:43700310-43702350 chr1:44339710-44340110 chr1:44509810-44510410 chr1:43809760-43812110 chr1:43483640-43484880 chr1:43600690-43602390 chr1:43602560-43604440 chr1:43664320-43665060 chr1:44132760-44133440 chr1:44447150-44447360 chr1:44447600-44449660 chr1:43613760-43614950 chr1:43514000-43516400 chr1:44071290-44071910 chr1:44132230-44132620 chr1:43124180-43124510 chr1:43124580-43124890 chr1:43124920-43125190 chr1:43148400-43149070 chr1:43159190-43159770 chr1:43392910-43393270 chr1:43393480-43394600 chr1:43394700-43394880 chr1:43394990-43395260 chr1:43395450-43395540 chr1:43395710-43396290 chr1:43408990-43411460 chr1:43411690-43412740 chr1:43413390-43414300 chr1:43414590-43416970 chr1:43431000-43431520 chr1:43437000-43438410 chr1:43438570-43439640 chr1:43443660-43445160 chr1:43445260-43447720 chr1:43457650-43458790 chr1:43458870-43460150 chr1:43461840-43463090 chr1:43475980-43476800 chr1:43478340-43478970 chr1:43496250-43497950 chr1:43721270-43723680 chr1:43735760-43736350 chr1:43736460-43737850 chr1:43742360-43743770 chr1:43779640-43779950 chr1:43826060-43826160 chr1:43826260-43826400 chr1:43826630-43826790 chr1:43827980-43828620 chr1:43829810-43829990 chr1:43830130-43830210 chr1:43996760-43999200 chr1:44001650-44003760 chr1:44010500-44010700 chr1:44015390-44017390 chr1:43417280-43419720 chr1:43711030-43712840 chr1:43826920-43827860 chr1:44072130-44072480 chr1:43665180-43667590 chr1:44017820-44019160 chr1:44131410-44132120 chr1:44338010-44338300 chr1:44380660-44381060 chr1:44389650-44391260 chr1:44401390-44401740 chr1:44401900-44401970 chr1:44350150-44351960 chr1:44461340-44461440 chr1:44463410-44463520 chr1:44506860-44508730 chr1:44231350-44233330 chr1:44346640-44347420 chr1:44057620-44058120 chr1:44121730-44121990 chr1:44244850-44245970 chr1:44247270-44248000 chr1:44478660-44479380 chr1:44479700-44480160 chr1:44451290-44452280 chr1:44480230-44480720 chr1:44069200-44069280 chr1:44463700-44464300 chr1:43525670-43527070 chr1:43943310-43943710 chr1:44491350-44492660 |
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Promoter: |
chr1:44115820-44171189 |
Sample ID | Experiment target | Biosample type | Biosample term name | GSM ID | Tissue type | Source |
---|---|---|---|---|---|---|
TcoF_00_20308 | KDM4A | cell line | H1 | GSM1003479 | Embryo | Cistrome |
TcoF_00_40376 | KDM4A | cell line | WA01 | GSM1003479 | None | ReMap |
TcoF_00_20182 | KDM4A | cell | breast triple negative tumor cell line BCSC1 | GSM2498494 | Breast | Cistrome |
TcoF_00_20181 | KDM4A | cell | breast triple negative tumor cell line BCSC1 | GSM2498496 | Breast | Cistrome |
TcoF_00_20317 | KDM4A | cell line | H1 | GSM831035 | Embryo | Cistrome |
OFFICIAL_SYMBOL_A | OFFICIAL_SYMBOL_B | EXPERIMENTAL_SYSTEM | PUBMED_ID | ORGANISM_A_ID | ORGANISM_B_ID | SOURCE |
---|---|---|---|---|---|---|
KDM4A | KDM4A | Affinity Capture-Western | 17207460 | 9606 | 9606 | BIOGRID |
KDM4A | KDM4C | Affinity Capture-Western | 17207460 | 9606 | 9606 | BIOGRID |
KDM4A | HIST1H3A | Biochemical Activity | 16732292 | 9606 | 9606 | BIOGRID |
KDM4A | HIST1H3A | Co-crystal Structure | 16601153 | 9606 | 9606 | BIOGRID |
KDM4A | HIST1H3A | Protein-peptide | 16601153 | 9606 | 9606 | BIOGRID |
KDM4A | NCOR1 | Affinity Capture-Western | 16024779 | 9606 | 9606 | BIOGRID |
KDM4A | NCOR1 | Reconstituted Complex | 16024779 | 9606 | 9606 | BIOGRID |
KDM4A | NCOR1 | Co-localization | 16024779 | 9606 | 9606 | BIOGRID |
KDM4A | HDAC1 | Affinity Capture-Western | 15927959 | 9606 | 9606 | BIOGRID |
KDM4A | HDAC3 | Affinity Capture-Western | 15927959 | 9606 | 9606 | BIOGRID |
KDM4A | RB1 | Affinity Capture-Western | 15927959 | 9606 | 9606 | BIOGRID |
KDM4A | RB1 | Two-hybrid | 15927959 | 9606 | 9606 | BIOGRID |
KDM4A | AR | Affinity Capture-Western | 17555712 | 9606 | 9606 | BIOGRID |
KDM4A | HIST1H4A | Protein-peptide | 17190600 | 9606 | 9606 | BIOGRID |
KDM4A | H3F3A | Co-crystal Structure | 21931800 | 9606 | 9606 | BIOGRID |
KDM4A | CUL1 | Affinity Capture-Western | 21757720 | 9606 | 9606 | BIOGRID |
KDM4A | FBXL4 | Affinity Capture-Western | 21757720 | 9606 | 9606 | BIOGRID |
KDM4A | CAPZA1 | Co-fractionation | 26344197 | 9606 | 9606 | BIOGRID |
KDM4A | PRMT5 | Negative Genetic | 26864203 | 9606 | 9606 | BIOGRID |
KDM4A | S100A9 | Affinity Capture-MS | 24981860 | 9606 | 9606 | BIOGRID |
KDM4A | H3F3A | Biochemical Activity | 16603238 | 9606 | 9913 | BIOGRID |