1. Home
  2. Browse TcoF of biosample
TcoF overview
TcoF: KDM3B
GeneID: 23633
Name: Lysine-specific demethylase 3B
Ensembl: ENSG00000120733
Species: Human
Class: class 3
Family: Lysine demethylase
Disease: 2
Go term: 12
Pathway: 1
Hallmark: --
Super Enhancer:

chr5:137672529-137691073 chr5:137672264-137713375 chr5:137672446-137690596 chr5:137671884-137707734 chr5:137669989-137730477 chr5:137672489-137690833 chr5:137666155-137703238 chr5:137672201-137690721 chr5:137666415-137697590 chr5:137672277-137707344 chr5:137672093-137691866 chr5:137672040-137691992 chr5:137672193-137691652 chr5:137672250-137690571 chr5:137672261-137707337
Enhancer:

chr5:137666910-137667280 chr5:137992700-137993470 chr5:138089200-138091550 chr5:137499030-137499530 chr5:137753300-137754640 chr5:137754920-137756270 chr5:137758190-137759460 chr5:137760030-137761090 chr5:137761270-137762260 chr5:137801760-137802440 chr5:137909820-137910920 chr5:137548750-137548840 chr5:137344780-137346690 chr5:137497840-137498810 chr5:137629560-137630640 chr5:137660250-137661050 chr5:137665340-137666670 chr5:137743010-137744870 chr5:137474480-137475050 chr5:137767990-137768270 chr5:137823800-137826280 chr5:137936900-137937820 chr5:137938920-137939890 chr5:137940480-137941520 chr5:138128300-138129050 chr5:137736860-137738010 chr5:138110620-138111390 chr5:137734080-137735540 chr5:137750930-137753170 chr5:137774930-137776620 chr5:137483770-137485320 chr5:137637910-137639620 chr5:137724250-137726700 chr5:137290070-137292160 chr5:137805000-137807250 chr5:137727950-137728850 chr5:137729060-137730020 chr5:137970910-137971950 chr5:137706290-137708360 chr5:137546590-137548670 chr5:137621820-137622180 chr5:137622320-137622850 chr5:137622960-137624600 chr5:137894350-137895550 chr5:137908880-137909450 chr5:138037500-138039220 chr5:137299740-137301680 chr5:137320020-137320860 chr5:137341510-137342670 chr5:137342840-137344500 chr5:137442150-137443020 chr5:137486700-137488170 chr5:137490660-137491820 chr5:137895780-137896730 chr5:137854560-137855900 chr5:137807860-137809250 chr5:137811540-137814030 chr5:137863160-137865240 chr5:137334980-137337250 chr5:137844510-137846250 chr5:138031600-138033960 chr5:138177730-138180110 chr5:138180560-138181810 chr5:138235730-138237770 chr5:138238310-138240000 chr5:138271180-138271500 chr5:138271710-138272640 chr5:138272730-138274840 chr5:138275340-138277120 chr5:138346920-138347840 chr5:137428060-137428600 chr5:137565520-137567730 chr5:137957530-137959140 chr5:137575760-137576530 chr5:138039790-138041660 chr5:137576640-137578860 chr5:138027520-138028960 chr5:138042040-138043760 chr5:138034820-138036920

Promoter:

chr5:137688374-137772717

 ChIP-seq based regulatory details of KDM3B
Sample ID Experiment target Biosample type Biosample term name GSM ID Tissue type Source
TcoF_00_20029 KDM3B cell line HCT-116 GSM1847178 Colon Cistrome
TcoF_00_20028 KDM3B cell line HCT-116 GSM1847179 Colon Cistrome
 Downstream target genes of KDM3B
 Upstream regulatory details of KDM3B
 Protein-protein interaction of KDM3B
OFFICIAL_SYMBOL_A OFFICIAL_SYMBOL_B EXPERIMENTAL_SYSTEM PUBMED_ID ORGANISM_A_ID ORGANISM_B_ID SOURCE
KDM3B HIST3H3 Biochemical Activity 22615488 9606 9606 BIOGRID
KDM3B CREBBP Two-hybrid 22615488 9606 9606 BIOGRID
KDM3B SRP68 Co-fractionation 22863883 9606 9606 BIOGRID
KDM3B DEPDC1 Affinity Capture-MS 26496610 9606 9606 BIOGRID
KDM3B LMNB2 Affinity Capture-MS 26496610 9606 9606 BIOGRID
KDM3B PRMT5 Negative Genetic 26864203 9606 9606 BIOGRID
KDM3B SMAD1 Affinity Capture-MS 24981860 9606 9606 BIOGRID
KDM3B CSTA Affinity Capture-MS 24981860 9606 9606 BIOGRID
KDM3B FABP5 Affinity Capture-MS 24981860 9606 9606 BIOGRID
KDM3B IDH3A Affinity Capture-MS 24981860 9606 9606 BIOGRID
 Annotation of KDM3B
 TCGA cancer survival map of KDM3B


Calculate the hazards ratio based on Cox PH Model.
Add the 95% CI as dotted line.
Reset Add The plot axis-x order will follow the list.


Calculate the hazards ratio based on Cox PH Model.
We use log2(TPM + 1) for log-scale.
All Add
Reset The plot is based on the datasets of list.


 Expression of  KDM3B
 Disease information of  KDM3B