TF information

TF name: TBX18
TF family: T-box
Ensembl gene ID: ENSG00000112837
Ensembl protein ID: ENSP00000358677, ENSP00000475498, ENSP00000476137, ENSP00000475873
Entrez gene ID: 9096
Database name Link Database name Link
NCBI Gene: Genecards:
Uniprot: Wikipedia:
Cosmic 3D: Geneontology:
CCLE:

Frequency of TBX18 in all biosamples
Sample ID Biosample type Tissue type Biosample name TF Frequency
Sample_02_395Cell lineMammary GlandBT-5490.0067132867132867

TBX18 distribution in samples’ most representative CRC
Sample ID Tissue type Biosample type Biosample name

TBX18 distribution in all CRCs
Biosample type
Biosample name
Sample ID

Genomic distribution of SEs associated with TBX18
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Mutation of TBX18
Database name Link
gnomAD: gnomAD
ExAC: ExAC
ICGC:
Database name Link
Cosmic:
Cosmic cell lines:
Depmap:

TCGA somatic mutations and clinical variants of TBX18

rsID Chr Start Stop Ref Alt Gene_region Gene_symble Effect TCGA_Occurrence
-chr68544643185446431GAexonicTBX18nonsynonymous SKCM|1|368|0.00272
-chr68545765985457659GTexonicTBX18synonymous LUAD|2|543|0.00368
-chr68545769385457693GCexonicTBX18nonsynonymous LUAD|1|543|0.00184
-chr68544690385446903TAexonicTBX18nonsynonymous LUAD|1|543|0.00184
-chr68544706185447061AGexonicTBX18nonsynonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204
-chr68544644185446441TGexonicTBX18nonsynonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204
-chr68547226285472262CTexonicTBX18nonsynonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204
-chr68545778985457789AGexonicTBX18nonsynonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204
-chr68545766285457662GTexonicTBX18synonymous BRCA|1|982|0.00102
-chr68547236285472362GAexonicTBX18synonymous SKCM|1|368|0.00272
rs755758645chr68545777385457773CTexonicTBX18synonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204,UCEC|1|248|0.00403
-chr68544705185447051GAexonicTBX18synonymous LUAD|1|543|0.00184
-chr68547237085472370CGexonicTBX18nonsynonymous PRAD|1|499|0.00200
-chr68547388585473885TAexonicTBX18synonymous TGCT|1|155|0.00645
-chr68546999085469990CGexonicTBX18synonymous HNSC|1|512|0.00195
-chr68544651585446515GTexonicTBX18nonsynonymous HNSC|1|512|0.00195
-chr68544706885447068GAexonicTBX18nonsynonymous SARC|1|247|0.00405
rs771906442chr68547239085472390CTexonicTBX18synonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr68544825985448259AGexonicTBX18nonsynonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr68547243185472431GAexonicTBX18nonsynonymous SKCM|1|368|0.00272
-chr68547007285470072CTexonicTBX18nonsynonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr68546647385466473TGexonicTBX18nonsynonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr68545397785453977ACsplicingTBX18splicing LUAD|1|543|0.00184
-chr68544667785446677GAexonicTBX18nonsynonymous SKCM|1|368|0.00272
-chr68545765985457659GAexonicTBX18synonymous PAAD|1|185|0.00541
-chr68544668485446684GAexonicTBX18stopgain LUSC|1|178|0.00562
-chr68544696485446964GTexonicTBX18synonymous ACC|1|90|0.01111
-chr68544661385446613G-exonicTBX18frameshift LIHC|1|373|0.00268
-chr68544711185447111GAexonicTBX18synonymous CESC|1|194|0.00515
-chr68547234285472342CTexonicTBX18synonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204
-chr68544692585446925CAexonicTBX18nonsynonymous LUAD|1|543|0.00184
rs540323894chr68547239385472393CTexonicTBX18synonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr68547238985472389GTexonicTBX18nonsynonymous LUSC|1|178|0.00562
-chr68544685885446858ATexonicTBX18nonsynonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr68544689585446895CAexonicTBX18nonsynonymous BLCA|1|396|0.00253
-chr68547226885472268GTexonicTBX18nonsynonymous LUSC|1|178|0.00562
-chr68545777885457778GCexonicTBX18nonsynonymous SKCM|1|368|0.00272
-chr68544702685447026GAexonicTBX18nonsynonymous SKCM|2|368|0.00543
rs201883996chr68547230785472307CTexonicTBX18nonsynonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr68547239085472390CGexonicTBX18synonymous HNSC|1|512|0.00195
-chr68547371385473713CTexonicTBX18nonsynonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204
-chr68545398685453986GAexonicTBX18nonsynonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204,THYM|1|123|0.00813,UCEC|1|248|0.00403
-chr68544686985446869CTexonicTBX18nonsynonymous DLBC|1|48|0.02083,LUAD|1|543|0.00184
-chr68544694585446945TAexonicTBX18nonsynonymous LIHC|1|373|0.00268
-chr68547227985472279GAexonicTBX18synonymous SKCM|1|368|0.00272
-chr68545778785457787GTexonicTBX18nonsynonymous LUSC|1|178|0.00562
-chr68545770785457707CAexonicTBX18synonymous LUSC|1|178|0.00562
-chr68544669385446699GGTTAGT-exonicTBX18frameshift LIHC|1|373|0.00268
-chr68545765285457652ATexonicTBX18nonsynonymous LUAD|1|543|0.00184
-chr68544702785447027GTexonicTBX18nonsynonymous KIPAN|2|799|0.00250,KIRC|2|451|0.00443
-chr68545399385453993GCexonicTBX18nonsynonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr68546649085466490C-exonicTBX18frameshift STAD|1|395|0.00253,STES|1|395|0.00253
rs150088516chr68546656985466569CTexonicTBX18synonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204,SKCM|1|368|0.00272
rs747562979chr68544675885446758GAexonicTBX18nonsynonymous GBM|1|290|0.00345,GBMLGG|1|820|0.00122,SKCM|1|368|0.00272
rs754825542chr68545766285457662GAexonicTBX18synonymous UCEC|1|248|0.00403
-chr68544685985446859GAexonicTBX18synonymous SKCM|1|368|0.00272
rs780853862chr68544642085446420AGexonicTBX18nonsynonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204
-chr68544684785446847CTexonicTBX18synonymous SKCM|1|368|0.00272
-chr68544674485446744G-exonicTBX18frameshift BLCA|1|396|0.00253,PAAD|2|185|0.01081
-chr68544641885446418AGexonicTBX18synonymous COAD|2|367|0.00545,COADREAD|2|489|0.00409
-chr68544642885446428GCexonicTBX18nonsynonymous LUAD|4|543|0.00737
-chr68546656485466564CTexonicTBX18stopgain SKCM|1|368|0.00272
-chr68544668485446684GCexonicTBX18nonsynonymous LUSC|1|178|0.00562
rs771393702chr68545771085457710GAexonicTBX18synonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204
-chr68544703085447030GTexonicTBX18synonymous LUAD|2|543|0.00368
-chr68544696285446962CAexonicTBX18nonsynonymous LUAD|1|543|0.00184
-chr68544708085447080GCexonicTBX18nonsynonymous LUAD|1|543|0.00184
-chr68544686585446865AGexonicTBX18synonymous LUSC|1|178|0.00562
-chr68547000985470009GCexonicTBX18nonsynonymous STAD|1|395|0.00253,STES|1|395|0.00253
rs149934675chr68545775785457757GAexonicTBX18nonsynonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204
-chr68544660985446609GTexonicTBX18nonsynonymous BLCA|1|396|0.00253
-chr68546646485466464GAexonicTBX18synonymous PRAD|1|499|0.00200
-chr68544651185446511CAexonicTBX18synonymous LUSC|1|178|0.00562
rs148004775chr68546646185466461GAexonicTBX18synonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204,UCEC|1|248|0.00403
-chr68545773285457732GAexonicTBX18nonsynonymous SKCM|1|368|0.00272
-chr68544689585446895CTexonicTBX18synonymous PRAD|1|499|0.00200
-chr68546641685466416AGexonicTBX18synonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204
-chr68544674585446745GAexonicTBX18synonymous SKCM|1|368|0.00272
rs145891330chr68544698485446984CTexonicTBX18nonsynonymous STAD|1|395|0.00253,STES|1|395|0.00253
rs114400107chr68544670385446703GAexonicTBX18synonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204,PRAD|1|499|0.00200
-chr68544824885448248TGexonicTBX18nonsynonymous BRCA|1|982|0.00102
-chr68545399785453997CAexonicTBX18nonsynonymous BRCA|1|982|0.00102
-chr68544675685446756CTexonicTBX18nonsynonymous SKCM|1|368|0.00272
-chr68544685585446855CAexonicTBX18nonsynonymous LUSC|1|178|0.00562
-chr68544826685448266GTexonicTBX18nonsynonymous BRCA|1|982|0.00102
rs762981355chr68546654085466540GAexonicTBX18nonsynonymous SKCM|1|368|0.00272
-chr68544679385446793GAexonicTBX18synonymous BLCA|1|396|0.00253,CESC|1|194|0.00515
-chr68544646985446469GTexonicTBX18nonsynonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204
rs767135395chr68547232185472321GAexonicTBX18synonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr68546651185466511GTexonicTBX18nonsynonymous BLCA|1|396|0.00253
-chr68546644185466441TCexonicTBX18nonsynonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204
rs753516864chr68546649585466495GAexonicTBX18nonsynonymous SKCM|1|368|0.00272
-chr68544704485447044AGexonicTBX18nonsynonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204
rs758075575chr68547369085473690GAexonicTBX18synonymous CESC|1|194|0.00515,PAAD|1|185|0.00541
-chr68544698185446981CTexonicTBX18nonsynonymous BRCA|1|982|0.00102
-chr68544666785446667ATexonicTBX18synonymous LUAD|1|543|0.00184
rs752986259chr68544651685446516GAexonicTBX18nonsynonymous SKCM|1|368|0.00272
-chr68544823385448233GAexonicTBX18nonsynonymous SKCM|1|368|0.00272
-chr68544685785446857TAexonicTBX18nonsynonymous SKCM|1|368|0.00272
-chr68544829685448296CTexonicTBX18nonsynonymous LUSC|1|178|0.00562
rs773728624chr68547365885473658GAexonicTBX18nonsynonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr68544657285446572CAexonicTBX18nonsynonymous LUAD|1|543|0.00184
-chr68544704385447043CTexonicTBX18nonsynonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr68544653685446536GAexonicTBX18nonsynonymous PRAD|1|499|0.00200,STAD|2|395|0.00506,STES|2|395|0.00506
-chr68547382885473828CTexonicTBX18synonymous BLCA|1|396|0.00253
-chr68544674385446743-GexonicTBX18frameshift LUAD|1|543|0.00184
-chr68544698685446986GTexonicTBX18nonsynonymous LUAD|1|543|0.00184
-chr68544661085446610TAexonicTBX18nonsynonymous LUSC|1|178|0.00562
rs372777291chr68545398585453985CTexonicTBX18nonsynonymous UCEC|1|248|0.00403
-chr68546651185466511GAexonicTBX18nonsynonymous BRCA|1|982|0.00102
-chr68544653585446535CAexonicTBX18synonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr68547242585472425CTexonicTBX18nonsynonymous LUSC|1|178|0.00562
-chr68544660285446602GAexonicTBX18nonsynonymous PRAD|1|499|0.00200
-chr68544704385447043CAexonicTBX18nonsynonymous OV|1|469|0.00213
-chr68544674585446745GTexonicTBX18synonymous LUAD|1|543|0.00184
-chr68545400985454009GAexonicTBX18nonsynonymous LAML|1|197|0.00508
-chr68544689185446891CTexonicTBX18nonsynonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr68547235185472351CTexonicTBX18synonymous OV|1|469|0.00213
-chr68544675785446757CAexonicTBX18synonymous LUSC|1|178|0.00562
rs372776015chr68545777485457774GAexonicTBX18nonsynonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204
-chr68547240585472405G-exonicTBX18frameshift STAD|1|395|0.00253,STES|1|395|0.00253
-chr68544650085446500TAexonicTBX18nonsynonymous LUAD|1|543|0.00184
-chr68546643285466432AGexonicTBX18nonsynonymous LUAD|1|543|0.00184
-chr68544822585448225ATexonicTBX18synonymous GBMLGG|1|820|0.00122,LGG|1|530|0.00189
rs769202556chr68544685685446856AGexonicTBX18synonymous STAD|1|395|0.00253,STES|1|395|0.00253
rs376283250chr68544653085446530CTexonicTBX18nonsynonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr68544678385446783GAexonicTBX18stopgain UCEC|1|248|0.00403
rs571410094chr68544825785448257GAexonicTBX18nonsynonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204,PRAD|1|499|0.00200
-chr68547236285472362GCexonicTBX18nonsynonymous HNSC|1|512|0.00195
-chr68544668985446689GCexonicTBX18nonsynonymous THCA|1|504|0.00198
-chr68545771485457714GAexonicTBX18nonsynonymous SKCM|1|368|0.00272
-chr68544689385446893GAexonicTBX18nonsynonymous UCEC|1|248|0.00403
-chr68545403685454036CTexonicTBX18nonsynonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204
-chr68544665085446650GAexonicTBX18nonsynonymous SKCM|1|368|0.00272
-chr68544642585446425TAexonicTBX18nonsynonymous PAAD|1|185|0.00541
-chr68544645485446454GTexonicTBX18synonymous LUAD|1|543|0.00184,LUSC|1|178|0.00562
-chr68546657085466570GAexonicTBX18nonsynonymous COADREAD|1|489|0.00204,READ|1|122|0.00820,SKCM|1|368|0.00272,UCEC|1|248|0.00403
-chr68547239185472391GAexonicTBX18nonsynonymous SKCM|1|368|0.00272
-chr68544668185446681CTexonicTBX18nonsynonymous UCEC|1|248|0.00403
-chr68544692185446921CGexonicTBX18nonsynonymous HNSC|1|512|0.00195
-chr68547238585472385GAexonicTBX18nonsynonymous LUSC|1|178|0.00562
-chr68547229985472299CTexonicTBX18nonsynonymous THCA|1|504|0.00198
-chr68544685185446851CGexonicTBX18nonsynonymous LUAD|1|543|0.00184
rs200317774chr68545775685457756CTexonicTBX18nonsynonymous UCEC|1|248|0.00403
-chr68547364985473649CAexonicTBX18nonsynonymous LUAD|1|543|0.00184
-chr68544659285446592CTexonicTBX18synonymous SKCM|1|368|0.00272
-chr68544683185446831CAexonicTBX18nonsynonymous ACC|1|90|0.01111
rs774472628chr68544687485446874CTexonicTBX18synonymous GBM|1|290|0.00345,GBMLGG|1|820|0.00122
-chr68544677085446770GAexonicTBX18nonsynonymous SKCM|1|368|0.00272
rs745675915chr68547390085473900C-UTR5TBX18unknown COAD|1|367|0.00272,COADREAD|1|489|0.00204
-chr68544698785446987GTexonicTBX18nonsynonymous LUAD|1|543|0.00184
-chr68547368485473684GAexonicTBX18synonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr68544683585446835GTexonicTBX18synonymous UCEC|1|248|0.00403
-chr68544827085448270CTexonicTBX18stopgain SKCM|1|368|0.00272
rs757361472chr68544653585446535CTexonicTBX18synonymous BRCA|1|982|0.00102,STAD|2|395|0.00506,STES|2|395|0.00506
-chr68544673685446736CAexonicTBX18nonsynonymous LUSC|1|178|0.00562
-chr68544671785446717ATexonicTBX18nonsynonymous LIHC|1|373|0.00268
-chr68547361985473619CTexonicTBX18nonsynonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr68544643685446436CTexonicTBX18synonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204
-chr68544824085448240TAexonicTBX18nonsynonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr68545770685457706CAexonicTBX18stopgain CESC|1|194|0.00515
-chr68544650785446507CTexonicTBX18nonsynonymous SKCM|2|368|0.00543
-chr68544825685448256CTexonicTBX18nonsynonymous UCEC|1|248|0.00403
rs754663368chr68545776485457764GAexonicTBX18synonymous PRAD|1|499|0.00200
-chr68547007385470073GAexonicTBX18nonsynonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204
rs781249482chr68544657885446578GTexonicTBX18nonsynonymous LIHC|1|373|0.00268
-chr68547004485470044GAexonicTBX18synonymous SKCM|1|368|0.00272

Disease information of TBX18
TF_name Disease_name Disease_class Disease_semantic_type TF_disease_source
TBX18 Congenital hydronephrosis Congenital Abnormality ORPHANET
TBX18 Obstruction of pelviureteric junction C12;C13;C16 Pathologic Function CTD_human;UNIPROT
TBX18 MULTICYSTIC RENAL DYSPLASIA, BILATERAL C12;C13;C16 Disease or Syndrome CTD_human;UNIPROT
TBX18 Cakut C12;C13;C16 Disease or Syndrome GENOMICS_ENGLAND
TBX18 Hydronephrosis Due To Pujo C12;C13;C16 Disease or Syndrome CTD_human;UNIPROT

Pathway associated with TBX18
pathway_ID pathway_name pathway_source gene_number edge_number

Go term information of TBX18
GO_term_name GO_term_type TF_name
GO_REGULATION_OF_CANONICAL_WNT_SIGNALING_PATHWAY BP TBX18
GO_NEGATIVE_REGULATION_OF_DEVELOPMENTAL_PROCESS BP TBX18
GO_NEGATIVE_REGULATION_OF_WNT_SIGNALING_PATHWAY BP TBX18
GO_RNA_POLYMERASE_II_TRANSCRIPTION_COREPRESSOR_ACTIVITY MF TBX18
GO_TRANSCRIPTION_FACTOR_ACTIVITY_RNA_POLYMERASE_II_TRANSCRIPTION_FACTOR_BINDING MF TBX18

Survival analysis of TBX18



Calculate the hazards ratio based on Cox PH Model.
Add the 95% CI as dotted line.

Expression of TBX18