Cancer CRCdb

Sample ID	Biosample type	Tissue type	Biosample name	TF Frequency
Sample_02_310	Cell line	Neuroblastoma	SJNB8	0.14482306684142

Database name	Link
gnomAD:	gnomAD
ExAC:	ExAC
ICGC:

Database name	Link
Cosmic:
Cosmic cell lines:
Depmap:

TCGA somatic mutations and clinical variants of RFX7

rsID	Chr	Start	Stop	Ref	Alt	Gene_region	Gene_symble	Effect	TCGA_Occurrence
-	chr15	56388135	56388135	G	A	exonic	RFX7	synonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr15	56388298	56388298	G	T	exonic	RFX7	nonsynonymous	TGCT\|1\|155\|0.00645
-	chr15	56387067	56387067	T	A	exonic	RFX7	synonymous	COAD\|1\|367\|0.00272,COADREAD\|1\|489\|0.00204
-	chr15	56394441	56394441	T	C	exonic	RFX7	nonsynonymous	LIHC\|1\|373\|0.00268
-	chr15	56390356	56390356	G	C	exonic	RFX7	nonsynonymous	BRCA\|1\|982\|0.00102
-	chr15	56385854	56385854	T	C	exonic	RFX7	nonsynonymous	UCEC\|1\|248\|0.00403
rs779059853	chr15	56388271	56388271	C	T	exonic	RFX7	nonsynonymous	KIPAN\|2\|799\|0.00250,KIRC\|2\|451\|0.00443
-	chr15	56388470	56388470	T	C	exonic	RFX7	nonsynonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr15	56390515	56390515	G	C	exonic	RFX7	nonsynonymous	ESCA\|1\|185\|0.00541
rs370718493	chr15	56386157	56386157	G	A	exonic	RFX7	nonsynonymous	BLCA\|1\|396\|0.00253
-	chr15	56394372	56394372	C	G	exonic	RFX7	nonsynonymous	ESCA\|1\|185\|0.00541
-	chr15	56434995	56434995	C	A	exonic	RFX7	stopgain	BLCA\|1\|396\|0.00253
-	chr15	56386180	56386180	-	T	exonic	RFX7	frameshift	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr15	56386666	56386666	T	A	exonic	RFX7	nonsynonymous	LUAD\|1\|543\|0.00184
rs759209409	chr15	56386020	56386020	G	A	exonic	RFX7	synonymous	BRCA\|1\|982\|0.00102
-	chr15	56387601	56387601	G	A	exonic	RFX7	synonymous	UCEC\|1\|248\|0.00403
rs767843728	chr15	56388073	56388073	T	C	exonic	RFX7	nonsynonymous	UCS\|1\|57\|0.01754
-	chr15	56385858	56385858	T	C	exonic	RFX7	synonymous	UCEC\|1\|248\|0.00403
-	chr15	56387950	56387950	C	T	exonic	RFX7	nonsynonymous	LUAD\|1\|543\|0.00184
-	chr15	56386134	56386134	T	C	exonic	RFX7	synonymous	LUSC\|1\|178\|0.00562
-	chr15	56386692	56386692	A	G	exonic	RFX7	synonymous	UCEC\|1\|248\|0.00403
-	chr15	56387864	56387864	G	A	exonic	RFX7	stopgain	DLBC\|1\|48\|0.02083
-	chr15	56387309	56387309	C	A	exonic	RFX7	stopgain	HNSC\|1\|512\|0.00195
-	chr15	56388644	56388644	G	A	exonic	RFX7	nonsynonymous	PRAD\|1\|499\|0.00200
-	chr15	56394390	56394390	C	A	exonic	RFX7	nonsynonymous	UCEC\|1\|248\|0.00403
-	chr15	56390553	56390553	G	A	exonic	RFX7	nonsynonymous	ESCA\|1\|185\|0.00541
-	chr15	56387724	56387724	G	T	exonic	RFX7	synonymous	UCEC\|1\|248\|0.00403
rs769531103	chr15	56385659	56385659	A	T	exonic	RFX7	nonsynonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr15	56387891	56387891	G	A	exonic	RFX7	stopgain	HNSC\|1\|512\|0.00195
-	chr15	56387722	56387722	G	C	exonic	RFX7	nonsynonymous	BLCA\|1\|396\|0.00253
-	chr15	56386365	56386365	A	G	exonic	RFX7	synonymous	ESCA\|1\|185\|0.00541
-	chr15	56388648	56388648	C	T	exonic	RFX7	synonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr15	56386044	56386044	A	T	exonic	RFX7	synonymous	SKCM\|1\|368\|0.00272
-	chr15	56393577	56393577	A	G	exonic	RFX7	nonsynonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr15	56385566	56385566	G	A	exonic	RFX7	nonsynonymous	COAD\|1\|367\|0.00272,COADREAD\|1\|489\|0.00204
-	chr15	56387143	56387143	T	C	exonic	RFX7	nonsynonymous	HNSC\|1\|512\|0.00195
-	chr15	56388213	56388213	C	T	exonic	RFX7	synonymous	HNSC\|1\|512\|0.00195
-	chr15	56393703	56393703	G	T	exonic	RFX7	nonsynonymous	HNSC\|1\|512\|0.00195
-	chr15	56386135	56386135	G	A	exonic	RFX7	nonsynonymous	ESCA\|1\|185\|0.00541
-	chr15	56386801	56386801	G	C	exonic	RFX7	stopgain	BRCA\|1\|982\|0.00102
-	chr15	56395867	56395867	T	A	exonic	RFX7	nonsynonymous	KIPAN\|1\|799\|0.00125,KIRC\|1\|451\|0.00222
-	chr15	56385746	56385746	T	C	exonic	RFX7	nonsynonymous	LIHC\|1\|373\|0.00268
-	chr15	56386849	56386849	A	C	exonic	RFX7	nonsynonymous	UCEC\|1\|248\|0.00403
-	chr15	56387073	56387073	T	C	exonic	RFX7	synonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr15	56386765	56386765	G	C	exonic	RFX7	nonsynonymous	LIHC\|1\|373\|0.00268
rs548638907	chr15	56385698	56385698	G	A	exonic	RFX7	nonsynonymous	SKCM\|2\|368\|0.00543
-	chr15	56388340	56388340	G	A	exonic	RFX7	nonsynonymous	PAAD\|1\|185\|0.00541,UCEC\|1\|248\|0.00403
-	chr15	56385880	56385880	G	A	exonic	RFX7	nonsynonymous	PAAD\|1\|185\|0.00541
-	chr15	56385646	56385646	G	T	exonic	RFX7	nonsynonymous	TGCT\|1\|155\|0.00645
-	chr15	56386181	56386181	T	-	exonic	RFX7	stopgain	COAD\|2\|367\|0.00545,COADREAD\|2\|489\|0.00409
rs373795444	chr15	56390309	56390309	G	T	exonic	RFX7	synonymous	UCEC\|1\|248\|0.00403
-	chr15	56387452	56387452	C	A	exonic	RFX7	nonsynonymous	LUAD\|1\|543\|0.00184
-	chr15	56386014	56386014	G	A	exonic	RFX7	synonymous	SKCM\|1\|368\|0.00272
rs776565931	chr15	56385633	56385633	T	C	exonic	RFX7	synonymous	COADREAD\|1\|489\|0.00204,READ\|1\|122\|0.00820
rs369466675	chr15	56388113	56388113	G	A	exonic	RFX7	nonsynonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr15	56395864	56395864	A	G	exonic	RFX7	nonsynonymous	COAD\|1\|367\|0.00272,COADREAD\|1\|489\|0.00204
-	chr15	56388525	56388525	C	T	exonic	RFX7	nonsynonymous	BLCA\|1\|396\|0.00253
-	chr15	56388259	56388259	G	A	exonic	RFX7	nonsynonymous	SKCM\|1\|368\|0.00272
-	chr15	56395801	56395801	C	G	exonic	RFX7	nonsynonymous	GBMLGG\|1\|820\|0.00122,LGG\|1\|530\|0.00189
-	chr15	56387701	56387701	G	A	exonic	RFX7	nonsynonymous	CESC\|1\|194\|0.00515
-	chr15	56388408	56388408	C	T	exonic	RFX7	synonymous	HNSC\|1\|512\|0.00195
rs779256368	chr15	56388765	56388765	G	A	exonic	RFX7	synonymous	COAD\|1\|367\|0.00272,COADREAD\|1\|489\|0.00204
-	chr15	56390286	56390286	G	A	exonic	RFX7	nonsynonymous	SKCM\|1\|368\|0.00272
-	chr15	56387708	56387708	T	C	exonic	RFX7	nonsynonymous	UCEC\|1\|248\|0.00403
rs771109013	chr15	56535451	56535451	C	T	exonic	RFX7	synonymous	UCEC\|1\|248\|0.00403
-	chr15	56387725	56387725	G	A	exonic	RFX7	nonsynonymous	SKCM\|2\|368\|0.00543
-	chr15	56387063	56387067	TGGGT	-	exonic	RFX7	frameshift	PAAD\|1\|185\|0.00541
-	chr15	56387780	56387780	T	-	exonic	RFX7	frameshift	GBMLGG\|1\|820\|0.00122,LGG\|1\|530\|0.00189
-	chr15	56387980	56387980	G	C	exonic	RFX7	nonsynonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr15	56388045	56388045	A	T	exonic	RFX7	synonymous	KICH\|1\|66\|0.01515,KIPAN\|1\|799\|0.00125
-	chr15	56390316	56390316	A	G	exonic	RFX7	nonsynonymous	SKCM\|1\|368\|0.00272
-	chr15	56436654	56436654	C	G	exonic	RFX7	nonsynonymous	ESCA\|1\|185\|0.00541
-	chr15	56385786	56385786	G	A	exonic	RFX7	synonymous	UCEC\|1\|248\|0.00403
-	chr15	56385597	56385597	T	G	exonic	RFX7	synonymous	UCEC\|1\|248\|0.00403
-	chr15	56387238	56387238	C	G	exonic	RFX7	nonsynonymous	KIPAN\|1\|799\|0.00125,KIRP\|1\|282\|0.00355
rs140370063	chr15	56388173	56388173	C	T	exonic	RFX7	nonsynonymous	BLCA\|2\|396\|0.00505
-	chr15	56535348	56535348	G	T	exonic	RFX7	nonsynonymous	COAD\|1\|367\|0.00272,COADREAD\|1\|489\|0.00204
-	chr15	56535387	56535387	G	A	exonic	RFX7	nonsynonymous	HNSC\|1\|512\|0.00195
-	chr15	56435084	56435084	-	G	exonic	RFX7	frameshift	ESCA\|1\|185\|0.00541
-	chr15	56387730	56387730	C	T	exonic	RFX7	synonymous	HNSC\|1\|512\|0.00195
-	chr15	56386689	56386689	G	A	exonic	RFX7	synonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr15	56394437	56394437	C	T	exonic	RFX7	nonsynonymous	CESC\|1\|194\|0.00515
-	chr15	56387143	56387143	T	A	exonic	RFX7	nonsynonymous	LUSC\|1\|178\|0.00562
-	chr15	56393597	56393597	C	T	exonic	RFX7	synonymous	LUAD\|1\|543\|0.00184
rs758855222	chr15	56387736	56387736	T	C	exonic	RFX7	synonymous	SKCM\|1\|368\|0.00272
-	chr15	56436621	56436621	C	T	exonic	RFX7	nonsynonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr15	56535479	56535479	G	A	exonic	RFX7	nonsynonymous	SARC\|1\|247\|0.00405
-	chr15	56387837	56387837	G	T	exonic	RFX7	nonsynonymous	GBM\|1\|290\|0.00345,GBMLGG\|1\|820\|0.00122
-	chr15	56387176	56387176	T	C	exonic	RFX7	nonsynonymous	UCEC\|1\|248\|0.00403
rs34255389	chr15	56387421	56387421	T	C	exonic	RFX7	synonymous	DLBC\|1\|48\|0.02083
-	chr15	56388088	56388088	G	A	exonic	RFX7	nonsynonymous	PRAD\|1\|499\|0.00200
-	chr15	56387953	56387953	T	C	exonic	RFX7	nonsynonymous	LIHC\|1\|373\|0.00268
rs747202421	chr15	56387374	56387374	G	T	exonic	RFX7	nonsynonymous	UCEC\|1\|248\|0.00403
-	chr15	56435016	56435016	C	T	exonic	RFX7	nonsynonymous	CESC\|1\|194\|0.00515
rs747535873	chr15	56388287	56388287	C	T	exonic	RFX7	nonsynonymous	HNSC\|1\|512\|0.00195
-	chr15	56393610	56393610	T	C	exonic	RFX7	nonsynonymous	HNSC\|1\|512\|0.00195
rs547205397	chr15	56435018	56435018	G	A	exonic	RFX7	nonsynonymous	GBM\|1\|290\|0.00345,GBMLGG\|1\|820\|0.00122
-	chr15	56388201	56388201	T	A	exonic	RFX7	synonymous	BLCA\|1\|396\|0.00253
-	chr15	56387725	56387725	G	T	exonic	RFX7	nonsynonymous	UCEC\|1\|248\|0.00403
-	chr15	56385803	56385803	T	C	exonic	RFX7	nonsynonymous	COADREAD\|1\|489\|0.00204,READ\|1\|122\|0.00820
-	chr15	56395777	56395777	G	T	exonic	RFX7	nonsynonymous	ESCA\|1\|185\|0.00541
rs753737369	chr15	56386880	56386880	-	G	exonic	RFX7	frameshift	COAD\|1\|367\|0.00272,COADREAD\|1\|489\|0.00204,GBM\|1\|290\|0.00345,GBMLGG\|1\|820\|0.00122,KIPAN\|4\|799\|0.00501,KIRC\|4\|451\|0.00887,LUAD\|1\|543\|0.00184
-	chr15	56386858	56386858	G	A	exonic	RFX7	nonsynonymous	UCEC\|1\|248\|0.00403
-	chr15	56386608	56386608	A	C	exonic	RFX7	synonymous	HNSC\|1\|512\|0.00195
-	chr15	56387792	56387792	C	T	exonic	RFX7	nonsynonymous	KIPAN\|2\|799\|0.00250,KIRC\|2\|451\|0.00443
-	chr15	56386261	56386261	C	A	exonic	RFX7	nonsynonymous	UCEC\|1\|248\|0.00403
-	chr15	56387748	56387748	T	C	exonic	RFX7	nonsynonymous	LUAD\|1\|543\|0.00184
-	chr15	56387426	56387426	G	A	exonic	RFX7	stopgain	GBMLGG\|1\|820\|0.00122,LGG\|1\|530\|0.00189
-	chr15	56388290	56388290	C	T	exonic	RFX7	nonsynonymous	HNSC\|1\|512\|0.00195
rs188196919	chr15	56386815	56386815	G	A	exonic	RFX7	synonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr15	56395777	56395777	G	A	exonic	RFX7	nonsynonymous	UCEC\|1\|248\|0.00403
-	chr15	56386803	56386803	G	T	exonic	RFX7	synonymous	UCEC\|1\|248\|0.00403
-	chr15	56393665	56393665	T	-	exonic	RFX7	frameshift	KIPAN\|1\|799\|0.00125,KIRC\|1\|451\|0.00222
-	chr15	56388062	56388062	T	C	exonic	RFX7	nonsynonymous	LIHC\|1\|373\|0.00268
rs768475607	chr15	56385627	56385627	G	A	exonic	RFX7	synonymous	LIHC\|1\|373\|0.00268
-	chr15	56385940	56385940	G	C	exonic	RFX7	nonsynonymous	BLCA\|1\|396\|0.00253
rs756963590	chr15	56386996	56386996	C	T	exonic	RFX7	nonsynonymous	COAD\|1\|367\|0.00272,COADREAD\|1\|489\|0.00204
-	chr15	56387666	56387666	G	A	exonic	RFX7	nonsynonymous	LUAD\|1\|543\|0.00184
-	chr15	56388708	56388708	T	C	exonic	RFX7	synonymous	KICH\|1\|66\|0.01515,KIPAN\|1\|799\|0.00125
-	chr15	56387675	56387675	A	C	exonic	RFX7	nonsynonymous	LIHC\|1\|373\|0.00268
-	chr15	56390306	56390306	A	G	exonic	RFX7	synonymous	KIPAN\|1\|799\|0.00125,KIRC\|1\|451\|0.00222
-	chr15	56385786	56385786	G	T	exonic	RFX7	nonsynonymous	COADREAD\|1\|489\|0.00204,READ\|1\|122\|0.00820
-	chr15	56387064	56387064	G	A	exonic	RFX7	synonymous	COAD\|1\|367\|0.00272,COADREAD\|1\|489\|0.00204
-	chr15	56387541	56387541	A	G	exonic	RFX7	synonymous	UCEC\|1\|248\|0.00403
-	chr15	56436623	56436623	G	C	exonic	RFX7	nonsynonymous	HNSC\|1\|512\|0.00195
-	chr15	56387637	56387637	A	C	exonic	RFX7	nonsynonymous	COAD\|1\|367\|0.00272,COADREAD\|1\|489\|0.00204
-	chr15	56386321	56386321	G	A	exonic	RFX7	nonsynonymous	SKCM\|1\|368\|0.00272
-	chr15	56535410	56535410	T	C	exonic	RFX7	nonsynonymous	PAAD\|1\|185\|0.00541
-	chr15	56388382	56388382	G	A	exonic	RFX7	nonsynonymous	COAD\|1\|367\|0.00272,COADREAD\|1\|489\|0.00204
-	chr15	56388218	56388218	C	T	exonic	RFX7	nonsynonymous	LIHC\|1\|373\|0.00268
-	chr15	56386375	56386375	G	A	exonic	RFX7	nonsynonymous	SKCM\|1\|368\|0.00272
rs753217039	chr15	56390461	56390461	G	A	exonic	RFX7	nonsynonymous	GBMLGG\|1\|820\|0.00122,LGG\|1\|530\|0.00189,PRAD\|1\|499\|0.00200
rs373394346	chr15	56386857	56386857	C	T	exonic	RFX7	synonymous	PRAD\|1\|499\|0.00200
-	chr15	56387470	56387470	G	T	exonic	RFX7	nonsynonymous	UCEC\|1\|248\|0.00403
-	chr15	56535334	56535334	C	A	exonic	RFX7	nonsynonymous	COAD\|1\|367\|0.00272,COADREAD\|1\|489\|0.00204
-	chr15	56386211	56386211	C	T	exonic	RFX7	nonsynonymous	STAD\|2\|395\|0.00506,STES\|2\|395\|0.00506
-	chr15	56390337	56390337	G	A	exonic	RFX7	nonsynonymous	SKCM\|2\|368\|0.00543
-	chr15	56535420	56535420	-	G	exonic	RFX7	frameshift	LUAD\|1\|543\|0.00184
-	chr15	56385972	56385972	G	C	exonic	RFX7	synonymous	LUSC\|1\|178\|0.00562
-	chr15	56388705	56388705	C	A	exonic	RFX7	nonsynonymous	COAD\|1\|367\|0.00272,COADREAD\|1\|489\|0.00204
rs373795444	chr15	56390309	56390309	G	A	exonic	RFX7	synonymous	SKCM\|1\|368\|0.00272
-	chr15	56387585	56387585	-	A	exonic	RFX7	frameshift	HNSC\|1\|512\|0.00195
-	chr15	56436614	56436614	C	T	exonic	RFX7	nonsynonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr15	56385610	56385610	G	A	exonic	RFX7	nonsynonymous	LUAD\|1\|543\|0.00184
-	chr15	56388683	56388683	C	A	exonic	RFX7	nonsynonymous	LUAD\|1\|543\|0.00184
-	chr15	56385982	56385982	G	T	exonic	RFX7	nonsynonymous	GBMLGG\|1\|820\|0.00122,LGG\|1\|530\|0.00189
-	chr15	56387817	56387817	C	A	exonic	RFX7	synonymous	HNSC\|1\|512\|0.00195
-	chr15	56386881	56386881	G	-	exonic	RFX7	frameshift	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
rs751528673	chr15	56388240	56388240	G	A	exonic	RFX7	synonymous	SKCM\|2\|368\|0.00543,UCEC\|1\|248\|0.00403
-	chr15	56387673	56387673	T	G	exonic	RFX7	synonymous	BLCA\|1\|396\|0.00253
-	chr15	56386859	56386859	G	A	exonic	RFX7	nonsynonymous	SKCM\|1\|368\|0.00272
-	chr15	56435004	56435004	G	A	exonic	RFX7	nonsynonymous	COAD\|1\|367\|0.00272,COADREAD\|1\|489\|0.00204
-	chr15	56390279	56390279	C	A	exonic	RFX7	synonymous	LUAD\|1\|543\|0.00184
-	chr15	56386864	56386864	C	A	exonic	RFX7	nonsynonymous	STAD\|1\|395\|0.00253,STES\|1\|395\|0.00253
-	chr15	56535343	56535343	G	C	exonic	RFX7	nonsynonymous	STAD\|2\|395\|0.00506,STES\|2\|395\|0.00506
-	chr15	56388251	56388251	C	T	exonic	RFX7	nonsynonymous	UCEC\|1\|248\|0.00403
-	chr15	56387612	56387612	T	G	exonic	RFX7	nonsynonymous	SKCM\|1\|368\|0.00272
-	chr15	56387339	56387339	C	A	exonic	RFX7	stopgain	LUSC\|1\|178\|0.00562
-	chr15	56387634	56387634	G	T	exonic	RFX7	synonymous	CESC\|1\|194\|0.00515
-	chr15	56395811	56395811	G	A	exonic	RFX7	synonymous	SKCM\|1\|368\|0.00272
-	chr15	56387080	56387080	G	A	exonic	RFX7	nonsynonymous	BRCA\|1\|982\|0.00102
-	chr15	56385630	56385630	A	C	exonic	RFX7	nonsynonymous	COAD\|1\|367\|0.00272,COADREAD\|1\|489\|0.00204
-	chr15	56387581	56387581	C	T	exonic	RFX7	stopgain	DLBC\|1\|48\|0.02083
rs750105671	chr15	56435040	56435040	G	A	exonic	RFX7	nonsynonymous	UCEC\|1\|248\|0.00403

TF name:	RFX7
TF family:	RFX
Ensembl gene ID:	ENSG00000181827
Ensembl protein ID:	ENSP00000453376, ENSP00000453611, ENSP00000453281
Entrez gene ID:	64864

Database name	Link	Database name	Link
NCBI Gene:		Genecards:
Uniprot:		Wikipedia:
Cosmic 3D:		Geneontology:
CCLE:

TF information

TCGA somatic mutations and clinical variants of RFX7

Survival analysis of RFX7

Expression of RFX7