Sample ID | Biosample type | Tissue type | Biosample name | TF Frequency |
---|---|---|---|---|
Sample_02_395 | Cell line | Mammary Gland | BT-549 | 0.061818181818182 |
Sample_02_413 | Tissue | Brain | GBM_2493 | 0.53846153846154 |
Sample ID | Tissue type | Biosample type | Biosample name |
---|---|---|---|
Sample_02_413 | Brain | Tissue | GBM_2493 |
rsID | Chr | Start | Stop | Ref | Alt | Gene_region | Gene_symble | Effect | TCGA_Occurrence |
---|---|---|---|---|---|---|---|---|---|
- | chr2 | 63283199 | 63283199 | C | A | exonic | OTX1 | synonymous | PAAD|1|185|0.00541 |
- | chr2 | 63282664 | 63282664 | G | C | exonic | OTX1 | nonsynonymous | KIPAN|1|799|0.00125,KIRC|1|451|0.00222 |
- | chr2 | 63283430 | 63283430 | A | T | exonic | OTX1 | synonymous | LIHC|1|373|0.00268 |
- | chr2 | 63283260 | 63283261 | CA | - | exonic | OTX1 | frameshift | PAAD|11|185|0.05946 |
- | chr2 | 63283301 | 63283301 | T | A | exonic | OTX1 | synonymous | SARC|1|247|0.00405 |
- | chr2 | 63282698 | 63282698 | G | - | exonic | OTX1 | frameshift | LIHC|1|373|0.00268 |
- | chr2 | 63280185 | 63280185 | C | T | exonic | OTX1 | synonymous | UCEC|1|248|0.00403 |
- | chr2 | 63282880 | 63282880 | C | T | exonic | OTX1 | nonsynonymous | BLCA|1|396|0.00253 |
- | chr2 | 63282982 | 63282982 | C | T | exonic | OTX1 | nonsynonymous | BLCA|1|396|0.00253 |
- | chr2 | 63280140 | 63280140 | C | T | exonic | OTX1 | synonymous | LUAD|1|543|0.00184 |
- | chr2 | 63282713 | 63282713 | G | A | exonic | OTX1 | synonymous | SKCM|1|368|0.00272 |
- | chr2 | 63282998 | 63282998 | G | A | exonic | OTX1 | synonymous | UCEC|1|248|0.00403 |
- | chr2 | 63280133 | 63280133 | C | A | exonic | OTX1 | nonsynonymous | UCEC|1|248|0.00403 |
- | chr2 | 63282959 | 63282959 | G | C | exonic | OTX1 | synonymous | LUSC|1|178|0.00562 |
- | chr2 | 63283419 | 63283419 | G | A | exonic | OTX1 | nonsynonymous | LUAD|1|543|0.00184 |
- | chr2 | 63282957 | 63282957 | G | A | exonic | OTX1 | nonsynonymous | PRAD|1|499|0.00200 |
- | chr2 | 63282730 | 63282730 | T | A | exonic | OTX1 | nonsynonymous | KIPAN|1|799|0.00125,KIRP|1|282|0.00355 |
- | chr2 | 63283240 | 63283240 | C | T | exonic | OTX1 | nonsynonymous | SKCM|1|368|0.00272 |
rs780058175 | chr2 | 63283401 | 63283401 | G | A | exonic | OTX1 | nonsynonymous | ESCA|1|185|0.00541 |
- | chr2 | 63283220 | 63283220 | C | T | exonic | OTX1 | synonymous | LUSC|1|178|0.00562 |
- | chr2 | 63283375 | 63283375 | C | G | exonic | OTX1 | nonsynonymous | PRAD|1|499|0.00200 |
- | chr2 | 63282935 | 63282935 | G | C | exonic | OTX1 | synonymous | OV|1|469|0.00213 |
- | chr2 | 63283050 | 63283050 | C | A | exonic | OTX1 | nonsynonymous | BLCA|2|396|0.00505 |
rs776338153 | chr2 | 63282997 | 63282997 | C | T | exonic | OTX1 | nonsynonymous | BLCA|1|396|0.00253 |
- | chr2 | 63282712 | 63282713 | AG | - | exonic | OTX1 | frameshift | HNSC|1|512|0.00195 |
- | chr2 | 63282824 | 63282824 | C | T | exonic | OTX1 | synonymous | BLCA|1|396|0.00253 |
- | chr2 | 63281286 | 63281286 | C | T | exonic | OTX1 | nonsynonymous | ESCA|1|185|0.00541,PAAD|1|185|0.00541,STAD|1|395|0.00253,STES|1|395|0.00253 |
- | chr2 | 63282664 | 63282664 | G | A | exonic | OTX1 | nonsynonymous | COAD|1|367|0.00272,COADREAD|1|489|0.00204 |
- | chr2 | 63283088 | 63283088 | C | A | exonic | OTX1 | synonymous | KIPAN|1|799|0.00125,KIRC|1|451|0.00222 |
- | chr2 | 63281299 | 63281299 | C | T | exonic | OTX1 | nonsynonymous | HNSC|1|512|0.00195 |
- | chr2 | 63282689 | 63282689 | C | T | exonic | OTX1 | synonymous | COAD|1|367|0.00272,COADREAD|1|489|0.00204 |
- | chr2 | 63282684 | 63282684 | G | A | exonic | OTX1 | nonsynonymous | LUAD|1|543|0.00184 |
- | chr2 | 63280223 | 63280223 | G | T | splicing | OTX1 | splicing | LUAD|1|543|0.00184 |
- | chr2 | 63283120 | 63283120 | G | A | exonic | OTX1 | nonsynonymous | KIPAN|1|799|0.00125,KIRC|1|451|0.00222 |
- | chr2 | 63283012 | 63283012 | C | T | exonic | OTX1 | nonsynonymous | BLCA|1|396|0.00253,SKCM|1|368|0.00272 |
- | chr2 | 63282748 | 63282748 | C | T | exonic | OTX1 | nonsynonymous | SKCM|1|368|0.00272 |
- | chr2 | 63283434 | 63283434 | C | T | exonic | OTX1 | nonsynonymous | COAD|1|367|0.00272,COADREAD|1|489|0.00204,UCEC|1|248|0.00403 |
- | chr2 | 63283445 | 63283445 | - | T | exonic | OTX1 | frameshift | HNSC|1|512|0.00195 |
- | chr2 | 63283098 | 63283098 | C | T | exonic | OTX1 | nonsynonymous | STAD|2|395|0.00506,STES|2|395|0.00506 |
- | chr2 | 63280157 | 63280157 | G | A | exonic | OTX1 | nonsynonymous | PAAD|1|185|0.00541 |
- | chr2 | 63283436 | 63283436 | G | T | exonic | OTX1 | synonymous | HNSC|1|512|0.00195 |
- | chr2 | 63283384 | 63283384 | T | A | exonic | OTX1 | nonsynonymous | COAD|1|367|0.00272,COADREAD|1|489|0.00204 |
- | chr2 | 63282651 | 63282651 | C | T | exonic | OTX1 | nonsynonymous | SKCM|1|368|0.00272 |
- | chr2 | 63283355 | 63283355 | C | T | exonic | OTX1 | synonymous | COAD|1|367|0.00272,COADREAD|1|489|0.00204 |
- | chr2 | 63283100 | 63283100 | C | T | exonic | OTX1 | synonymous | UCEC|1|248|0.00403 |
- | chr2 | 63282636 | 63282636 | G | T | exonic | OTX1 | nonsynonymous | LUAD|1|543|0.00184 |
- | chr2 | 63283331 | 63283331 | C | G | exonic | OTX1 | nonsynonymous | GBMLGG|1|820|0.00122,LGG|1|530|0.00189 |
- | chr2 | 63280175 | 63280175 | T | G | exonic | OTX1 | nonsynonymous | STAD|1|395|0.00253,STES|1|395|0.00253 |
- | chr2 | 63282778 | 63282778 | C | A | exonic | OTX1 | nonsynonymous | PAAD|1|185|0.00541 |
- | chr2 | 63283145 | 63283145 | G | A | exonic | OTX1 | synonymous | STAD|1|395|0.00253,STES|1|395|0.00253 |
- | chr2 | 63282953 | 63282953 | G | A | exonic | OTX1 | synonymous | PRAD|1|499|0.00200 |
- | chr2 | 63282759 | 63282759 | G | A | exonic | OTX1 | nonsynonymous | UCEC|1|248|0.00403 |
- | chr2 | 63283029 | 63283029 | G | A | exonic | OTX1 | nonsynonymous | COADREAD|1|489|0.00204,READ|1|122|0.00820 |
rs375731189 | chr2 | 63283009 | 63283009 | G | A | exonic | OTX1 | nonsynonymous | LUAD|1|543|0.00184 |
- | chr2 | 63282686 | 63282686 | G | T | exonic | OTX1 | synonymous | LUAD|1|543|0.00184 |
rs781168827 | chr2 | 63283271 | 63283271 | C | T | exonic | OTX1 | synonymous | PAAD|2|185|0.01081 |
- | chr2 | 63283061 | 63283061 | C | T | exonic | OTX1 | synonymous | PAAD|1|185|0.00541 |
rs75832508 | chr2 | 63282749 | 63282749 | C | T | exonic | OTX1 | synonymous | SKCM|2|368|0.00543 |
- | chr2 | 63283372 | 63283372 | C | T | exonic | OTX1 | nonsynonymous | UCEC|1|248|0.00403 |
- | chr2 | 63283274 | 63283274 | T | C | exonic | OTX1 | synonymous | COAD|2|367|0.00545,COADREAD|2|489|0.00409,HNSC|1|512|0.00195,PAAD|2|185|0.01081,SKCM|1|368|0.00272 |
- | chr2 | 63283169 | 63283169 | G | A | exonic | OTX1 | synonymous | GBMLGG|1|820|0.00122,LGG|1|530|0.00189 |
rs754197786 | chr2 | 63282728 | 63282728 | A | G | exonic | OTX1 | synonymous | UCEC|1|248|0.00403 |
rs761081890 | chr2 | 63283329 | 63283329 | G | A | exonic | OTX1 | nonsynonymous | THCA|2|504|0.00397 |
- | chr2 | 63283118 | 63283118 | C | T | exonic | OTX1 | synonymous | UCEC|1|248|0.00403 |
- | chr2 | 63283404 | 63283404 | T | G | exonic | OTX1 | nonsynonymous | COAD|1|367|0.00272,COADREAD|1|489|0.00204 |
rs199519181 | chr2 | 63282962 | 63282962 | G | A | exonic | OTX1 | synonymous | STAD|1|395|0.00253,STES|1|395|0.00253 |
TF_name | Disease_name | Disease_class | Disease_semantic_type | TF_disease_source |
---|
pathway_ID | pathway_name | pathway_source | gene_number | edge_number |
---|
GO_term_name | GO_term_type | TF_name |
---|---|---|
GO_HINDBRAIN_DEVELOPMENT | BP | OTX1 |
GO_FOREBRAIN_MORPHOGENESIS | BP | OTX1 |
GO_EAR_MORPHOGENESIS | BP | OTX1 |
GO_BRAIN_MORPHOGENESIS | BP | OTX1 |