TF information

TF name: NKX3-1
TF family: Homeobox
Ensembl gene ID: ENSG00000167034
Ensembl protein ID: ENSP00000370253, ENSP00000429729
Entrez gene ID: 4824
Database name Link Database name Link
NCBI Gene: Genecards:
Uniprot: Wikipedia:
Cosmic 3D: Geneontology:
CCLE:

Frequency of NKX3-1 in all biosamples
Sample ID Biosample type Tissue type Biosample name TF Frequency
Sample_01_068Cell lineProstate: derived from metastatic site: vertebral metastasisVCaP0.36986301369863

NKX3-1 distribution in samples’ most representative CRC
Sample ID Tissue type Biosample type Biosample name
Sample_01_068Prostate: derived from metastatic site: vertebral metastasisCell lineVCaP

NKX3-1 distribution in all CRCs
Biosample type
Biosample name
Sample ID

Genomic distribution of SEs associated with NKX3-1
Download

Mutation of NKX3-1
Database name Link
gnomAD: gnomAD
ExAC: ExAC
ICGC:
Database name Link
Cosmic:
Cosmic cell lines:
Depmap:

TCGA somatic mutations and clinical variants of NKX3-1

rsID Chr Start Stop Ref Alt Gene_region Gene_symble Effect TCGA_Occurrence
-chr82353900323539003GCexonicNKX3-1nonsynonymous PRAD|1|499|0.00200
rs763879828chr82353911023539110GTexonicNKX3-1stopgain LUAD|1|543|0.00184
-chr82353913523539135A-exonicNKX3-1frameshift PRAD|1|499|0.00200
rs2228013chr82354024923540249GAexonicNKX3-1nonsynonymous ACC|2|90|0.02222
-chr82353899223538992CAexonicNKX3-1synonymous ACC|1|90|0.01111
rs769852677chr82353880223538802CTexonicNKX3-1nonsynonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr82353892823538928AGexonicNKX3-1nonsynonymous PRAD|1|499|0.00200
-chr82353890123538901TCexonicNKX3-1nonsynonymous BRCA|1|982|0.00102
-chr82353879523538795TCexonicNKX3-1nonsynonymous UCEC|1|248|0.00403
-chr82353889723538897CTexonicNKX3-1nonsynonymous KICH|1|66|0.01515,KIPAN|1|799|0.00125,SKCM|1|368|0.00272
-chr82353905623539056CTexonicNKX3-1nonsynonymous SKCM|1|368|0.00272,UCEC|1|248|0.00403
-chr82353904123539041TGexonicNKX3-1nonsynonymous PRAD|1|499|0.00200
rs753524833chr82353882023538820GAexonicNKX3-1nonsynonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204
-chr82353891323538913GAexonicNKX3-1nonsynonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204
-chr82353889623538896TCexonicNKX3-1synonymous STAD|1|395|0.00253,STES|1|395|0.00253
rs35675040chr82353884523538845CTexonicNKX3-1synonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204
-chr82353875423538754ATexonicNKX3-1nonsynonymous LIHC|1|373|0.00268
-chr82353903823539038GAexonicNKX3-1nonsynonymous GBMLGG|1|820|0.00122,LGG|1|530|0.00189
-chr82353899823538998CAexonicNKX3-1nonsynonymous LUAD|1|543|0.00184
rs759874218chr82353890223538902AGexonicNKX3-1synonymous CESC|1|194|0.00515
-chr82353886523538865CTexonicNKX3-1nonsynonymous SKCM|1|368|0.00272
-chr82353906223539062CTexonicNKX3-1nonsynonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr82354021223540212CTexonicNKX3-1nonsynonymous SKCM|1|368|0.00272
-chr82353906923539069GAexonicNKX3-1stopgain COAD|1|367|0.00272,COADREAD|1|489|0.00204
-chr82353876023538760CGexonicNKX3-1nonsynonymous STAD|1|395|0.00253,STES|1|395|0.00253
rs373263457chr82353890923538909TCexonicNKX3-1nonsynonymous LUAD|1|543|0.00184,PRAD|1|499|0.00200
rs759016206chr82353909923539099GAexonicNKX3-1nonsynonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204
-chr82353882723538827GCexonicNKX3-1synonymous HNSC|1|512|0.00195
-chr82353886023538860CTexonicNKX3-1synonymous GBMLGG|1|820|0.00122,LGG|1|530|0.00189
-chr82353878723538787GAexonicNKX3-1nonsynonymous SKCM|1|368|0.00272
-chr82353884823538848CGexonicNKX3-1nonsynonymous BRCA|1|982|0.00102
-chr82353888923538889GTexonicNKX3-1nonsynonymous COADREAD|1|489|0.00204,READ|1|122|0.00820
-chr82353898023538980TCexonicNKX3-1synonymous LUAD|1|543|0.00184
rs752426352chr82353874723538747GAexonicNKX3-1nonsynonymous SKCM|1|368|0.00272
-chr82353876123538761CTexonicNKX3-1synonymous GBM|1|290|0.00345,GBMLGG|1|820|0.00122

Disease information of NKX3-1
TF_name Disease_name Disease_class Disease_semantic_type TF_disease_source
NKX3-1 Prostatic Neoplasms C04;C12 Neoplastic Process CTD_human
NKX3-1 Malignant neoplasm of prostate C04;C12 Neoplastic Process CTD_human

Pathway associated with NKX3-1
pathway_ID pathway_name pathway_source gene_number edge_number
pathway0000492 Coregulation of Androgen receptor activity pid 61 268
pathway0000824 FOXA1 transcription factor network pid 45 204
pathway0002662 Prostate cancer kegg 85 1261

Go term information of NKX3-1
GO_term_name GO_term_type TF_name
GO_NEGATIVE_REGULATION_OF_EPITHELIAL_CELL_PROLIFERATION BP NKX3-1
GO_NEGATIVE_REGULATION_OF_REPRODUCTIVE_PROCESS BP NKX3-1
GO_GLAND_MORPHOGENESIS BP NKX3-1
GO_METANEPHROS_DEVELOPMENT BP NKX3-1
GO_PROSTATE_GLAND_MORPHOGENESIS BP NKX3-1
GO_SALIVARY_GLAND_DEVELOPMENT BP NKX3-1
GO_POSITIVE_REGULATION_OF_MITOTIC_CELL_CYCLE BP NKX3-1
GO_MORPHOGENESIS_OF_AN_EPITHELIUM BP NKX3-1
GO_CELL_CYCLE_ARREST BP NKX3-1
GO_REGULATION_OF_RECEPTOR_BINDING BP NKX3-1
GO_POSITIVE_REGULATION_OF_LIPID_TRANSPORT BP NKX3-1
GO_MITOTIC_CELL_CYCLE_ARREST BP NKX3-1
GO_AORTA_DEVELOPMENT BP NKX3-1
GO_RESPONSE_TO_TESTOSTERONE BP NKX3-1
GO_CELLULAR_RESPONSE_TO_OXYGEN_LEVELS BP NKX3-1
GO_POSITIVE_REGULATION_OF_CELL_DIVISION BP NKX3-1
GO_REPRODUCTIVE_SYSTEM_DEVELOPMENT BP NKX3-1
GO_REGULATION_OF_STEROID_HORMONE_SECRETION BP NKX3-1
GO_CELLULAR_RESPONSE_TO_ORGANIC_SUBSTANCE BP NKX3-1
GO_REGULATION_OF_ENDOCRINE_PROCESS BP NKX3-1
GO_RESPONSE_TO_OXYGEN_LEVELS BP NKX3-1
GO_PROTEIN_KINASE_B_SIGNALING BP NKX3-1
GO_SOMITOGENESIS BP NKX3-1
GO_EXOCRINE_SYSTEM_DEVELOPMENT BP NKX3-1
GO_RESPONSE_TO_INTERLEUKIN_1 BP NKX3-1
GO_NEGATIVE_REGULATION_OF_MITOTIC_CELL_CYCLE BP NKX3-1
GO_REGULATION_OF_LIPID_TRANSPORT BP NKX3-1
GO_POSITIVE_REGULATION_OF_HORMONE_SECRETION BP NKX3-1
GO_NEGATIVE_REGULATION_OF_BINDING BP NKX3-1
GO_MORPHOGENESIS_OF_A_BRANCHING_STRUCTURE BP NKX3-1
GO_PHARYNGEAL_SYSTEM_DEVELOPMENT BP NKX3-1
GO_UROGENITAL_SYSTEM_DEVELOPMENT BP NKX3-1
GO_REGULATION_OF_INSULIN_LIKE_GROWTH_FACTOR_RECEPTOR_SIGNALING_PATHWAY BP NKX3-1
GO_POSITIVE_REGULATION_OF_INTRINSIC_APOPTOTIC_SIGNALING_PATHWAY BP NKX3-1
GO_EPITHELIAL_CELL_PROLIFERATION BP NKX3-1
GO_PROSTATE_GLAND_DEVELOPMENT BP NKX3-1
GO_ANDROGEN_RECEPTOR_SIGNALING_PATHWAY BP NKX3-1
GO_SOMITE_DEVELOPMENT BP NKX3-1
GO_POSITIVE_REGULATION_OF_PHOSPHATIDYLINOSITOL_3_KINASE_SIGNALING BP NKX3-1
GO_REGIONALIZATION BP NKX3-1
GO_NEGATIVE_REGULATION_OF_RECEPTOR_BINDING BP NKX3-1
GO_CELLULAR_RESPONSE_TO_DRUG BP NKX3-1
GO_REGULATION_OF_TRANSCRIPTION_FROM_RNA_POLYMERASE_II_PROMOTER BP NKX3-1
GO_PROTEIN_SELF_ASSOCIATION MF NKX3-1
GO_HORMONE_RECEPTOR_BINDING MF NKX3-1
GO_TRANSCRIPTION_FACTOR_ACTIVITY_DIRECT_LIGAND_REGULATED_SEQUENCE_SPECIFIC_DNA_BINDING MF NKX3-1
GO_ESTROGEN_RECEPTOR_BINDING MF NKX3-1
GO_STEROID_HORMONE_RECEPTOR_ACTIVITY MF NKX3-1
GO_PEPTIDASE_ACTIVATOR_ACTIVITY MF NKX3-1
GO_PEPTIDASE_ACTIVATOR_ACTIVITY_INVOLVED_IN_APOPTOTIC_PROCESS MF NKX3-1
GO_ENZYME_REGULATOR_ACTIVITY MF NKX3-1
GO_TRANSCRIPTION_FACTOR_ACTIVITY_RNA_POLYMERASE_II_CORE_PROMOTER_SEQUENCE_SPECIFIC MF NKX3-1
GO_CYSTEINE_TYPE_ENDOPEPTIDASE_REGULATOR_ACTIVITY_INVOLVED_IN_APOPTOTIC_PROCESS MF NKX3-1

Survival analysis of NKX3-1



Calculate the hazards ratio based on Cox PH Model.
Add the 95% CI as dotted line.

Expression of NKX3-1