TF information

TF name: HOXB9
TF family: Homeobox
Ensembl gene ID: ENSG00000170689
Ensembl protein ID: ENSP00000309439
Entrez gene ID: 3219
Database name Link Database name Link
NCBI Gene: Genecards:
Uniprot: Wikipedia:
Cosmic 3D: Geneontology:
CCLE:

Frequency of HOXB9 in all biosamples
Sample ID Biosample type Tissue type Biosample name TF Frequency
Sample_02_021Cell lineColonV4290.41366388008071
Sample_02_219Cell lineMammary GlandMDA-MB-2310.16666666666667
Sample_02_237Cell lineColonV3890.4758328731824
Sample_02_242Cell lineColonV4810.54354931743895
Sample_02_355Cell lineColonHCT150.48809523809524

HOXB9 distribution in samples’ most representative CRC
Sample ID Tissue type Biosample type Biosample name
Sample_02_021ColonCell lineV429
Sample_02_237ColonCell lineV389
Sample_02_242ColonCell lineV481

HOXB9 distribution in all CRCs
Biosample type
Biosample name
Sample ID

Genomic distribution of SEs associated with HOXB9
Download

Mutation of HOXB9
Database name Link
gnomAD: gnomAD
ExAC: ExAC
ICGC:
Database name Link
Cosmic:
Cosmic cell lines:
Depmap:

TCGA somatic mutations and clinical variants of HOXB9

rsID Chr Start Stop Ref Alt Gene_region Gene_symble Effect TCGA_Occurrence
rs754379249chr174670046446700464GCexonicHOXB9nonsynonymous SKCM|1|368|0.00272
-chr174670047146700471CTexonicHOXB9nonsynonymous LUSC|1|178|0.00562
-chr174670046046700460GAexonicHOXB9synonymous SKCM|1|368|0.00272
rs773821975chr174670320646703206CAexonicHOXB9synonymous LUAD|1|543|0.00184
-chr174670312846703128CTexonicHOXB9synonymous LUAD|1|543|0.00184
-chr174670351546703515CTexonicHOXB9synonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr174670321746703217C-exonicHOXB9frameshift BRCA|1|982|0.00102
-chr174670327446703274GTexonicHOXB9nonsynonymous BLCA|1|396|0.00253
rs371256693chr174670047246700472GAexonicHOXB9synonymous UCS|1|57|0.01754
rs200221711chr174670321946703219AGexonicHOXB9nonsynonymous COADREAD|1|489|0.00204,READ|1|122|0.00820
-chr174670329846703298CAexonicHOXB9nonsynonymous LUAD|1|543|0.00184
-chr174670356246703562GTexonicHOXB9nonsynonymous TGCT|1|155|0.00645
-chr174670030946700309GTexonicHOXB9synonymous LUAD|1|543|0.00184
rs367616249chr174670045846700458CTexonicHOXB9nonsynonymous ESCA|1|185|0.00541
-chr174670314546703145CGexonicHOXB9nonsynonymous ESCA|1|185|0.00541
rs756903374chr174670027746700277CTexonicHOXB9synonymous PRAD|1|499|0.00200
-chr174670320446703204CAexonicHOXB9nonsynonymous PAAD|1|185|0.00541
-chr174670329046703290CGexonicHOXB9synonymous LUAD|1|543|0.00184
-chr174670348646703486GAexonicHOXB9nonsynonymous CESC|1|194|0.00515
-chr174670315546703155TGexonicHOXB9nonsynonymous LUSC|1|178|0.00562
-chr174670354046703540CTexonicHOXB9nonsynonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr174670349146703491GCexonicHOXB9nonsynonymous GBM|1|290|0.00345,GBMLGG|1|820|0.00122
rs753591495chr174670343146703431GAexonicHOXB9synonymous LIHC|1|373|0.00268
-chr174670354746703547GAexonicHOXB9nonsynonymous BLCA|1|396|0.00253
-chr174670048146700481GCexonicHOXB9nonsynonymous LUAD|1|543|0.00184
rs762781006chr174670046846700468GAexonicHOXB9nonsynonymous STAD|1|395|0.00253,STES|1|395|0.00253
rs747302611chr174670030946700309GAexonicHOXB9nonsynonymous BRCA|1|982|0.00102,COAD|1|367|0.00272,COADREAD|1|489|0.00204,UCEC|1|248|0.00403
-chr174670354646703546GAexonicHOXB9nonsynonymous BLCA|1|396|0.00253
-chr174670353846703538GAexonicHOXB9stopgain GBM|1|290|0.00345,GBMLGG|1|820|0.00122
-chr174670031546700315GAexonicHOXB9stopgain SKCM|2|368|0.00543
-chr174670041046700411TT-exonicHOXB9frameshift COAD|2|367|0.00545,COADREAD|2|489|0.00409
-chr174670049746700497GTexonicHOXB9nonsynonymous ESCA|1|185|0.00541
-chr174670029246700292CTexonicHOXB9synonymous HNSC|1|512|0.00195

Disease information of HOXB9
TF_name Disease_name Disease_class Disease_semantic_type TF_disease_source
HOXB9 Malignant neoplasm of breast C04;C17 Neoplastic Process CTD_human
HOXB9 Prostatic Neoplasms C04;C12 Neoplastic Process CTD_human
HOXB9 Uterine Neoplasms C04;C13 Neoplastic Process CTD_human
HOXB9 Uterine Cancer C04;C13 Neoplastic Process CTD_human
HOXB9 Malignant neoplasm of prostate C04;C12 Neoplastic Process CTD_human
HOXB9 Breast Carcinoma C04;C17 Neoplastic Process CTD_human
HOXB9 ovarian neoplasm C04;C13;C19 Neoplastic Process CTD_human
HOXB9 Malignant neoplasm of ovary C04;C13;C19 Neoplastic Process CTD_human
HOXB9 Mammary Neoplasms, Human C04;C17 Neoplastic Process CTD_human
HOXB9 Mammary Neoplasms C04;C17 Neoplastic Process CTD_human

Pathway associated with HOXB9
pathway_ID pathway_name pathway_source gene_number edge_number

Go term information of HOXB9
GO_term_name GO_term_type TF_name
GO_CELL_CHEMOTAXIS BP HOXB9
GO_MAMMARY_GLAND_DEVELOPMENT BP HOXB9

Survival analysis of HOXB9



Calculate the hazards ratio based on Cox PH Model.
Add the 95% CI as dotted line.

Expression of HOXB9