Sample ID | Biosample type | Tissue type | Biosample name | TF Frequency |
---|---|---|---|---|
Sample_02_299 | Cell line | Neuroblastoma | CLB-MA | 0.22781774580336 |
Sample_02_304 | Cell line | Neuroblastoma | N206 | 0.23641304347826 |
Sample_02_322 | Cell line | Colon | Caco-2 | 0.30955585464334 |
Sample_02_413 | Tissue | Brain | GBM_2493 | 0.46703296703297 |
Sample ID | Tissue type | Biosample type | Biosample name |
---|---|---|---|
Sample_02_322 | Colon | Cell line | Caco-2 |
Sample_02_413 | Brain | Tissue | GBM_2493 |
rsID | Chr | Start | Stop | Ref | Alt | Gene_region | Gene_symble | Effect | TCGA_Occurrence |
---|---|---|---|---|---|---|---|---|---|
- | chr19 | 49134201 | 49134201 | C | T | exonic | DBP | nonsynonymous | HNSC|1|512|0.00195 |
- | chr19 | 49134243 | 49134243 | G | A | exonic | DBP | nonsynonymous | COAD|1|367|0.00272,COADREAD|1|489|0.00204 |
rs139841191 | chr19 | 49136713 | 49136713 | C | T | exonic | DBP | synonymous | COAD|1|367|0.00272,COADREAD|1|489|0.00204 |
- | chr19 | 49136816 | 49136816 | C | T | exonic | DBP | nonsynonymous | KIPAN|1|799|0.00125,KIRP|1|282|0.00355 |
- | chr19 | 49136702 | 49136703 | TT | - | exonic | DBP | frameshift | STAD|1|395|0.00253,STES|1|395|0.00253 |
- | chr19 | 49134255 | 49134255 | G | A | exonic | DBP | nonsynonymous | UCEC|1|248|0.00403 |
- | chr19 | 49134211 | 49134211 | C | T | exonic | DBP | synonymous | UCEC|1|248|0.00403 |
- | chr19 | 49140184 | 49140184 | G | - | exonic | DBP | frameshift | BRCA|1|982|0.00102 |
- | chr19 | 49136751 | 49136751 | G | C | exonic | DBP | nonsynonymous | LUSC|1|178|0.00562 |
- | chr19 | 49140149 | 49140149 | G | A | exonic | DBP | synonymous | HNSC|1|512|0.00195 |
- | chr19 | 49134209 | 49134209 | G | T | exonic | DBP | nonsynonymous | ESCA|1|185|0.00541 |
- | chr19 | 49134131 | 49134131 | A | T | exonic | DBP | nonsynonymous | KIPAN|1|799|0.00125,KIRC|1|451|0.00222 |
- | chr19 | 49139149 | 49139149 | C | - | exonic | DBP | frameshift | THCA|1|504|0.00198 |
- | chr19 | 49136708 | 49136708 | T | C | exonic | DBP | nonsynonymous | LIHC|1|373|0.00268 |
- | chr19 | 49134162 | 49134162 | C | T | exonic | DBP | nonsynonymous | PAAD|1|185|0.00541 |
- | chr19 | 49136903 | 49136903 | G | A | exonic | DBP | nonsynonymous | BLCA|1|396|0.00253 |
- | chr19 | 49134275 | 49134276 | TT | - | exonic | DBP | frameshift | STAD|1|395|0.00253,STES|1|395|0.00253 |
- | chr19 | 49136878 | 49136878 | G | A | exonic | DBP | synonymous | LUAD|1|543|0.00184 |
- | chr19 | 49134254 | 49134254 | C | T | exonic | DBP | nonsynonymous | PAAD|1|185|0.00541 |
- | chr19 | 49134134 | 49134155 | GCGCGGTAGTGGGACAGCTCCT | - | exonic | DBP | frameshift | KICH|1|66|0.01515,KIPAN|1|799|0.00125 |
- | chr19 | 49140174 | 49140174 | T | C | exonic | DBP | synonymous | STAD|1|395|0.00253,STES|1|395|0.00253 |
- | chr19 | 49136834 | 49136834 | G | A | exonic | DBP | nonsynonymous | STAD|1|395|0.00253,STES|1|395|0.00253 |
- | chr19 | 49134159 | 49134159 | G | T | exonic | DBP | nonsynonymous | LIHC|1|373|0.00268 |
- | chr19 | 49136867 | 49136867 | A | G | exonic | DBP | nonsynonymous | KIPAN|1|799|0.00125,KIRP|1|282|0.00355 |
- | chr19 | 49134232 | 49134232 | C | G | exonic | DBP | nonsynonymous | BLCA|1|396|0.00253 |
- | chr19 | 49136911 | 49136911 | G | T | exonic | DBP | synonymous | TGCT|1|155|0.00645 |
- | chr19 | 49134122 | 49134122 | C | T | exonic | DBP | nonsynonymous | HNSC|1|512|0.00195 |
- | chr19 | 49134221 | 49134221 | G | A | exonic | DBP | nonsynonymous | HNSC|2|512|0.00391 |
- | chr19 | 49134135 | 49134156 | GCGCGGTAGTGGGACAGCTCCT | - | exonic | DBP | frameshift | KICH|1|66|0.01515,KIPAN|1|799|0.00125 |
TF_name | Disease_name | Disease_class | Disease_semantic_type | TF_disease_source |
---|---|---|---|---|
DBP | Aortic Aneurysm, Thoracic | C14 | Disease or Syndrome | GENOMICS_ENGLAND |
pathway_ID | pathway_name | pathway_source | gene_number | edge_number |
---|---|---|---|---|
pathway0000316 | BMAL1:CLOCK,NPAS2 activates circadian gene expression | reactome | 42 | 282 |
pathway0002787 | Hs_Melatonin_metabolism_and_effects_WP3298_91618 | wikipathways | 7 | 8 |
GO_term_name | GO_term_type | TF_name |
---|---|---|
GO_POSITIVE_REGULATION_OF_VIRAL_TRANSCRIPTION | BP | DBP |
GO_CIRCADIAN_RHYTHM | BP | DBP |
GO_REGULATION_OF_MRNA_METABOLIC_PROCESS | BP | DBP |
GO_REGULATION_OF_RNA_STABILITY | BP | DBP |
GO_REGULATION_OF_HISTONE_METHYLATION | BP | DBP |
GO_NEGATIVE_REGULATION_OF_TRANSCRIPTION_ELONGATION_FROM_RNA_POLYMERASE_II_PROMOTER | BP | DBP |
GO_POSITIVE_REGULATION_OF_CELL_COMMUNICATION | BP | DBP |
GO_RNA_STABILIZATION | BP | DBP |
GO_NEGATIVE_REGULATION_OF_VIRAL_PROCESS | BP | DBP |
GO_3_UTR_MEDIATED_MRNA_STABILIZATION | BP | DBP |
GO_REGULATION_OF_HORMONE_LEVELS | BP | DBP |
GO_NEGATIVE_REGULATION_BY_HOST_OF_VIRAL_TRANSCRIPTION | BP | DBP |
GO_MODIFICATION_OF_MORPHOLOGY_OR_PHYSIOLOGY_OF_OTHER_ORGANISM | BP | DBP |
GO_CIRCADIAN_REGULATION_OF_GENE_EXPRESSION | BP | DBP |
GO_POSITIVE_REGULATION_OF_HISTONE_H3_K4_METHYLATION | BP | DBP |
GO_POSITIVE_REGULATION_OF_ORGANELLE_ORGANIZATION | BP | DBP |
GO_REGULATION_OF_TRANSCRIPTION_ELONGATION_FROM_RNA_POLYMERASE_II_PROMOTER | BP | DBP |
GO_POSITIVE_REGULATION_OF_INSULIN_SECRETION | BP | DBP |
GO_MODULATION_OF_TRANSCRIPTION_IN_OTHER_ORGANISM_INVOLVED_IN_SYMBIOTIC_INTERACTION | BP | DBP |
GO_REGULATION_OF_MRNA_3_END_PROCESSING | BP | DBP |
GO_NEGATIVE_REGULATION_OF_PROTEIN_KINASE_B_SIGNALING | BP | DBP |
GO_REGULATION_OF_SYMBIOSIS_ENCOMPASSING_MUTUALISM_THROUGH_PARASITISM | BP | DBP |
GO_TRANSCRIPTION_ELONGATION_FROM_RNA_POLYMERASE_II_PROMOTER | BP | DBP |
GO_APOPTOTIC_NUCLEAR_CHANGES | BP | DBP |
GO_NEGATIVE_REGULATION_OF_MRNA_METABOLIC_PROCESS | BP | DBP |
GO_POSITIVE_REGULATION_OF_CHROMATIN_MODIFICATION | BP | DBP |
GO_REGULATION_OF_MRNA_POLYADENYLATION | BP | DBP |
GO_REGULATION_OF_VIRAL_TRANSCRIPTION | BP | DBP |
GO_REGULATION_OF_HISTONE_H3_K4_METHYLATION | BP | DBP |
GO_REGULATION_OF_CHROMATIN_ORGANIZATION | BP | DBP |
GO_INTERACTION_WITH_SYMBIONT | BP | DBP |
GO_POSITIVE_REGULATION_OF_HISTONE_METHYLATION | BP | DBP |
GO_REGULATION_OF_GENERATION_OF_PRECURSOR_METABOLITES_AND_ENERGY | BP | DBP |
GO_POSITIVE_REGULATION_OF_PEPTIDE_SECRETION | BP | DBP |
GO_REGULATION_OF_CHROMOSOME_ORGANIZATION | BP | DBP |
GO_NEGATIVE_REGULATION_OF_MULTI_ORGANISM_PROCESS | BP | DBP |
GO_GLAND_DEVELOPMENT | BP | DBP |
GO_NEGATIVE_REGULATION_OF_DNA_TEMPLATED_TRANSCRIPTION_ELONGATION | BP | DBP |
GO_EXECUTION_PHASE_OF_APOPTOSIS | BP | DBP |
GO_CELLULAR_COMPONENT_DISASSEMBLY | BP | DBP |
GO_CELLULAR_COMPONENT_DISASSEMBLY_INVOLVED_IN_EXECUTION_PHASE_OF_APOPTOSIS | BP | DBP |
GO_CORTICAL_CYTOSKELETON_ORGANIZATION | BP | DBP |
GO_NEGATIVE_REGULATION_OF_VIRAL_TRANSCRIPTION | BP | DBP |
GO_REGULATION_OF_DNA_TEMPLATED_TRANSCRIPTION_ELONGATION | BP | DBP |
GO_TRANSCRIPTION_ELONGATION_FACTOR_COMPLEX | CC | DBP |
GO_PLASMA_MEMBRANE_RAFT | CC | DBP |
GO_PROTEIN_KINASE_C_BINDING | MF | DBP |
GO_TRANSCRIPTIONAL_ACTIVATOR_ACTIVITY_RNA_POLYMERASE_II_DISTAL_ENHANCER_SEQUENCE_SPECIFIC_BINDING | MF | DBP |
GO_RNA_POLYMERASE_II_TRANSCRIPTION_FACTOR_ACTIVITY_SEQUENCE_SPECIFIC_DNA_BINDING | MF | DBP |
GO_TRANSCRIPTIONAL_ACTIVATOR_ACTIVITY_RNA_POLYMERASE_II_CORE_PROMOTER_PROXIMAL_REGION_SEQUENCE_SPECIFIC_BINDING | MF | DBP |
GO_RNA_BINDING | MF | DBP |
GO_MRNA_3_UTR_BINDING | MF | DBP |