TF information

TF name: ARID3A
TF family: ARID
Ensembl gene ID: ENSG00000116017
Ensembl protein ID: ENSP00000263620, ENSP00000464969
Entrez gene ID: 1820
Database name Link Database name Link
NCBI Gene: Genecards:
Uniprot: Wikipedia:
Cosmic 3D: Geneontology:
CCLE:

Frequency of ARID3A in all biosamples
Sample ID Biosample type Tissue type Biosample name TF Frequency
Sample_02_307Cell lineNeuroblastomaSJNB120.30985915492958
Sample_02_308Cell lineNeuroblastomaSJNB10.234375
Sample_02_316Cell lineNeuroblastomaCHP2120.20879120879121

ARID3A distribution in samples’ most representative CRC
Sample ID Tissue type Biosample type Biosample name

ARID3A distribution in all CRCs
Biosample type
Biosample name
Sample ID

Genomic distribution of SEs associated with ARID3A
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Mutation of ARID3A
Database name Link
gnomAD: gnomAD
ExAC: ExAC
ICGC:
Database name Link
Cosmic:
Cosmic cell lines:
Depmap:

TCGA somatic mutations and clinical variants of ARID3A

rsID Chr Start Stop Ref Alt Gene_region Gene_symble Effect TCGA_Occurrence
-chr19964313964313CAexonicARID3Anonsynonymous PAAD|1|185|0.00541
rs34967265chr19929741929741CTexonicARID3Asynonymous ACC|3|90|0.03333
-chr19964880964880GAexonicARID3Anonsynonymous SKCM|1|368|0.00272
rs868683152chr19964263964263GAexonicARID3Anonsynonymous GBM|1|290|0.00345,GBMLGG|1|820|0.00122,LUAD|1|543|0.00184,THCA|1|504|0.00198
rs1799595chr19929753929753AGexonicARID3Asynonymous ACC|22|90|0.24444
-chr19968403968403AGsplicingARID3Asplicing UCEC|1|248|0.00403
-chr19971922971922CTexonicARID3Anonsynonymous SKCM|1|368|0.00272
rs538606329chr19964975964975GAexonicARID3Anonsynonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204
rs767204634chr19972055972055CTexonicARID3Anonsynonymous SARC|1|247|0.00405
-chr19964846964846CAexonicARID3Anonsynonymous UCEC|1|248|0.00403
rs3826948chr19929678929678GAexonicARID3Asynonymous ACC|10|90|0.11111
-chr19968479968479GAexonicARID3Anonsynonymous SKCM|1|368|0.00272
-chr19964428964428CGexonicARID3Anonsynonymous CESC|1|194|0.00515
-chr19971892971892CTexonicARID3Astopgain BLCA|1|396|0.00253
rs752338179chr19971952971952AGexonicARID3Anonsynonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204,STAD|3|395|0.00759,STES|3|395|0.00759,UCEC|1|248|0.00403
rs780084740chr19929709929709GAexonicARID3Anonsynonymous HNSC|1|512|0.00195
-chr19932539932539CTexonicARID3Anonsynonymous KIPAN|1|799|0.00125,KIRP|1|282|0.00355
-chr19971923971923CTexonicARID3Anonsynonymous SKCM|1|368|0.00272
-chr19932498932499AG-exonicARID3Aframeshift THCA|1|504|0.00198
-chr19971939971939CAexonicARID3Asynonymous UCEC|1|248|0.00403
-chr19932477932477AGexonicARID3Anonsynonymous LIHC|1|373|0.00268
-chr19966608966608GTexonicARID3Anonsynonymous LIHC|1|373|0.00268
-chr19964984964984GAexonicARID3Anonsynonymous PAAD|1|185|0.00541
-chr19929434929434GAUTR5ARID3Aunknown CESC|1|194|0.00515
-chr19932472932472GCexonicARID3Anonsynonymous LIHC|1|373|0.00268
-chr19929821929821CTexonicARID3Anonsynonymous THCA|1|504|0.00198
-chr19932484932484GTexonicARID3Anonsynonymous TGCT|1|155|0.00645
rs374271087chr19964968964968GAexonicARID3Asynonymous CESC|2|194|0.01031
rs755197409chr19960103960103CTexonicARID3Asynonymous UCEC|1|248|0.00403
rs558683351chr19929675929675CTexonicARID3Asynonymous SKCM|1|368|0.00272
-chr19968450968450ATexonicARID3Anonsynonymous LUAD|1|543|0.00184
rs535674511chr19971939971939CTexonicARID3Asynonymous PAAD|1|185|0.00541,PCPG|1|184|0.00543
-chr19965073965073CTexonicARID3Asynonymous BLCA|1|396|0.00253
-chr19929830929830CTexonicARID3Anonsynonymous BRCA|1|982|0.00102
-chr19971936971936CGexonicARID3Asynonymous KIPAN|1|799|0.00125,KIRP|1|282|0.00355
-chr19971943971943GCexonicARID3Anonsynonymous HNSC|2|512|0.00391
-chr19960131960131CGexonicARID3Anonsynonymous LUSC|1|178|0.00562
-chr19964334964334CAexonicARID3Anonsynonymous PCPG|1|184|0.00543
-chr19968403968403ATsplicingARID3Asplicing LIHC|1|373|0.00268
-chr19965040965040-AexonicARID3Aframeshift STAD|1|395|0.00253,STES|1|395|0.00253
-chr19966745966745CAexonicARID3Anonsynonymous STAD|1|395|0.00253,STES|1|395|0.00253
rs572708769chr19971946971946GAexonicARID3Anonsynonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr19964321964321GAexonicARID3Asynonymous PRAD|1|499|0.00200
-chr19964348964348CGexonicARID3Anonsynonymous BRCA|1|982|0.00102
rs779323045chr19971970971970GAexonicARID3Anonsynonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204
rs777080552chr19964396964396GAexonicARID3Asynonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204,HNSC|1|512|0.00195
rs145361495chr19964870964870CTexonicARID3Anonsynonymous UCEC|1|248|0.00403
rs147399288chr19965062965062GAexonicARID3Anonsynonymous UCEC|1|248|0.00403
rs552779877chr19971949971949-CAexonicARID3Aframeshift KIPAN|1|799|0.00125,KIRC|1|451|0.00222
-chr19964309964309CAexonicARID3Astopgain ACC|1|90|0.01111
-chr19932529932529C-exonicARID3Aframeshift PRAD|1|499|0.00200
rs762759062chr19972046972046CGexonicARID3Astopgain BLCA|1|396|0.00253
-chr19971927971927CGexonicARID3Anonsynonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr19964331964331GAexonicARID3Anonsynonymous UCEC|1|248|0.00403
-chr19960103960103CAexonicARID3Asynonymous UCEC|1|248|0.00403
-chr19929631929631C-exonicARID3Aframeshift THCA|1|504|0.00198
-chr19966846966846GCexonicARID3Anonsynonymous CESC|1|194|0.00515
-chr19932572932572CGexonicARID3Anonsynonymous ACC|1|90|0.01111

Disease information of ARID3A
TF_name Disease_name Disease_class Disease_semantic_type TF_disease_source

Pathway associated with ARID3A
pathway_ID pathway_name pathway_source gene_number edge_number
pathway0000608 Direct p53 effectors pid 141 972
pathway0002275 TP53 Regulates Transcription of Genes Involved in G1 Cell Cycle Arrest reactome 13 43

Go term information of ARID3A
GO_term_name GO_term_type TF_name
GO_REGULATION_OF_CELL_CYCLE_G1_S_PHASE_TRANSITION BP ARID3A
GO_SIGNAL_TRANSDUCTION_BY_P53_CLASS_MEDIATOR BP ARID3A
GO_REGULATION_OF_CELL_CYCLE_ARREST BP ARID3A
GO_POSITIVE_REGULATION_OF_CELL_CYCLE_ARREST BP ARID3A
GO_REGULATION_OF_MITOTIC_CELL_CYCLE BP ARID3A
GO_NEGATIVE_REGULATION_OF_CELL_CYCLE BP ARID3A
GO_PROTEIN_DIMERIZATION_ACTIVITY MF ARID3A
GO_CHROMATIN_BINDING MF ARID3A

Survival analysis of ARID3A



Calculate the hazards ratio based on Cox PH Model.
Add the 95% CI as dotted line.

Expression of ARID3A