If users input a gene set (gene symbol), scGRN will identify enriched pathways in up to 10 pathway databases.
1) Species: Select Homo sapiens or Mus musculus.
2) Data Type: Select the single cell omics data type of interest.
3) Method: Select the method to identify the network.
4) Tissue Type: Select the tissue of interest.
5) Biosample Type: Cell type classification of samples.
6) Biosample Name: Biosample name is made of cell/tissue/cell line name, treatment condition, processing time, etc.
1) Enrichment Type: Use TF/Target of selected samples for enrichment analysis.
2) # of edges: Select the top edges for enrichment analysis.
3) Databases: Select at least one database of pathways.
4) Threshold: Set P-Value and FDR thresholds.
5) GeneNumber: Limit the number range of genes in pathways.