CR overview
CR: TRIM28
Accession: Q13263
Protein names: Transcription intermediary factor 1-beta
Function type: Histone Modifier
Histone type: Reader
Methytor type: Unkown
Aliases: Histone methyltransferases
PMID: 34419074 34503347 34373456
Disease: 0
Go term: 45
Pathway: 6
Hallmark: 1
Super Enhancer:

chr19:59048903-59058240 chr19:59054969-59058289

Enhancer:

chr19:58790510-58792710 chr19:58497460-58499570 chr19:58660440-58662110 chr19:58694810-58695290 chr19:58740310-58740830 chr19:58920530-58921300 chr19:58978550-58980540 chr19:59010280-59010480 chr19:59011060-59011700 chr19:59029040-59030630 chr19:59056460-59056650 chr19:58571770-58572940 chr19:59063810-59065410 chr19:58695370-58697060 chr19:58963070-58965060 chr19:59010590-59010850 chr19:59116800-59119150 chr19:58324790-58326070 chr19:58950060-58951120 chr19:58987870-58988540 chr19:58439420-58441420 chr19:58445270-58446520 chr19:58466170-58467960 chr19:58499670-58499960 chr19:58570680-58571330 chr19:58573080-58574810 chr19:58575300-58576580 chr19:58838480-58840970 chr19:58871760-58874040 chr19:58890180-58892310 chr19:58397640-58400130 chr19:58425420-58427740 chr19:58545530-58547130 chr19:58607040-58609290 chr19:58988930-58989000 chr19:58456400-58458800 chr19:58740940-58741750 chr19:58667150-58667750 chr19:58451740-58452200 chr19:58532840-58534020 chr19:58537310-58539130 chr19:58549580-58551810 chr19:58989190-58989450 chr19:58989550-58991000 chr19:59062080-59062930 chr19:59063140-59063270 chr19:58864560-58864650 chr19:59010060-59010150 chr19:59018960-59021210 chr19:59021370-59022080 chr19:58999250-59001110 chr19:59075340-59076330 chr19:59095760-59098140

Promoter:

chr19:58542064-58546064

 ChIP-seq based regulatory details of TRIM28
Sample ID CR Biosample type Biosample term name File accession Experiment accession Source
CR_01_0096 TRIM28 cell line K562 ENCFF000QJH ENCSR000BRW Encode
CR_01_0097 TRIM28 cell line K562 ENCFF000QJK ENCSR000BRW Encode
CR_01_0164 TRIM28 cell line HEK293 ENCFF000WYV ENCSR000EUZ Encode
CR_01_0165 TRIM28 cell line HEK293 ENCFF000WYW ENCSR000EUZ Encode
CR_01_0361 TRIM28 cell line K562 ENCFF261BMQ ENCSR000BRW Encode
CR_01_0565 TRIM28 cell line K562 ENCFF784WEP ENCSR474CVP Encode
CR_01_0630 TRIM28 cell line K562 ENCFF914HTT ENCSR474CVP Encode
CR_01_0799 TRIM28 cell line K562 ENCFF000YSZ ENCSR000EVY Encode
CR_01_0800 TRIM28 cell line K562 ENCFF000YTA ENCSR000EVY Encode
CR_01_0820 TRIM28 cell line HEK293 ENCFF000ZTJ ENCSR618HNF Encode
CR_01_0821 TRIM28 cell line HEK293 ENCFF000ZTO ENCSR618HNF Encode
CR_02_0326 TRIM28 cell line HEK293 SRR14636838 GSE174958 GEO
CR_02_0327 TRIM28 cell line HEK293 SRR14636839 GSE174958 GEO
CR_02_0481 TRIM28 cell line MCF7 SRR3048489 GSE76271 GEO
CR_02_0527 TRIM28 iPS-derived cardiomyocytes BJAB B-cell line SRR4083592 GSE86154 GEO
CR_02_0620 TRIM28 cell line LNCaP SRR5238098 GSE94682 GEO
CR_02_0621 TRIM28 cell line LNCaP SRR5238099 GSE94682 GEO
CR_02_0622 TRIM28 cell line LNCaP SRR5238100 GSE94682 GEO
CR_02_0623 TRIM28 cell line LNCaP SRR5238101 GSE94682 GEO
CR_02_1437 TRIM28 cell line K562 SRR8660405 GSE127692 GEO
CR_02_1438 TRIM28 cell line K562 SRR8660406 GSE127692 GEO
 Downstream target genes of TRIM28
 Protein-protein interaction of TRIM28
 Annotation of TRIM28
 TCGA cancer survival map of TRIM28


Calculate the hazards ratio based on Cox PH Model.
Add the 95% CI as dotted line.
Reset Add The plot axis-x order will follow the list.


Calculate the hazards ratio based on Cox PH Model.
We use log2(TPM + 1) for log-scale.
All Add
Reset The plot is based on the datasets of list.