CR overview
CR: CBX5
Accession: P45973
Protein names: CBX5 protein
Function type: Histone Modifier
Histone type: Reader
Methytor type: Unkown
Aliases: chromobox homolog;CHD-ARID
PMID: 34458856 31095524 32585856
Disease: 3
Go term: 30
Pathway: 3
Hallmark: --
Super Enhancer:

chr12:54577419-54614329 chr12:54651176-54657230 chr12:54651233-54656637 chr12:54650895-54656955 chr12:54650672-54657512 chr12:54650467-54657010 chr12:54650717-54657087 chr12:54651321-54657073 chr12:54650412-54657518 chr12:54650657-54656976 chr12:54645739-54657173 chr12:54650784-54659494 chr12:54650791-54655095 chr12:54650800-54656980 chr12:54650798-54657495 chr12:54650766-54656975 chr12:54651348-54656665 chr12:54651004-54657016 chr12:54650742-54657174 chr12:54648866-54657673 chr12:54649229-54665255 chr12:54649175-54659501 chr12:54649229-54661313 chr12:54648063-54659571 chr12:54650386-54660783 chr12:54650850-54657036 chr12:54650271-54657611 chr12:54649240-54657609 chr12:54644686-54673628 chr12:54671532-54676202 chr12:54671396-54676753 chr12:54672130-54675992 chr12:54671480-54675883 chr12:54671553-54676152 chr12:54671868-54675799 chr12:54671769-54676175 chr12:54671466-54676356 chr12:54671844-54676105 chr12:54671673-54675945 chr12:54671704-54676094

Enhancer:

chr12:54650520-54651290 chr12:54651480-54653050 chr12:54689090-54689320 chr12:54764510-54764710 chr12:54764880-54765250 chr12:54765500-54767750 chr12:54767920-54769620 chr12:54805750-54808200 chr12:54764270-54764400 chr12:54687170-54688910 chr12:54803520-54805610 chr12:54784570-54785010 chr12:54801290-54801430 chr12:54801470-54801610 chr12:54801660-54801890 chr12:54853840-54854160 chr12:54854260-54854320 chr12:54500300-54500870 chr12:54566080-54568420 chr12:54568540-54569880 chr12:54582380-54582500 chr12:54749160-54750370 chr12:54981160-54982180 chr12:54959260-54960750 chr12:54557360-54559400 chr12:54792480-54793420 chr12:54520400-54522750 chr12:54427830-54428060 chr12:54473220-54474010 chr12:54474130-54475420 chr12:54642150-54643080 chr12:54892620-54893130 chr12:54622350-54624730 chr12:54757640-54758170 chr12:54644720-54645820 chr12:54798250-54798480 chr12:54658370-54659760 chr12:54360160-54361050 chr12:54579490-54581600 chr12:54856510-54856950 chr12:54857080-54858850 chr12:54734400-54735980 chr12:54119050-54121180 chr12:54144750-54145550 chr12:54200270-54200850 chr12:54201160-54201760 chr12:54218680-54219720 chr12:54256010-54257520 chr12:54260970-54263210 chr12:54351820-54353870 chr12:54357910-54358010 chr12:54358060-54359740 chr12:54359870-54360050 chr12:54361180-54361910 chr12:54367710-54368680 chr12:54534170-54536610 chr12:54539810-54541370 chr12:54620880-54621730 chr12:54731100-54733440 chr12:54776080-54778210 chr12:54943990-54944560 chr12:54214000-54215570 chr12:54403500-54404870 chr12:54548240-54548880 chr12:54548960-54550870 chr12:54838030-54838620 chr12:54115970-54116800 chr12:54162570-54164830 chr12:54191160-54192760 chr12:54221960-54223680 chr12:54236500-54237020 chr12:54349320-54350110 chr12:54461140-54463130 chr12:54615140-54617210 chr12:53836510-53837170 chr12:54220080-54220480 chr12:54552740-54553950 chr12:54554180-54556420 chr12:53837560-53838210 chr12:54577740-54578680 chr12:54865060-54867320 chr12:54960870-54961190 chr12:54350350-54351340 chr12:54830890-54831640 chr12:54802020-54802260 chr12:54411200-54413690 chr12:54803140-54803260 chr12:54559420-54561810 chr12:54846290-54847040 chr12:55076120-55077680 chr12:55077880-55080050 chr12:55094030-55094350 chr12:54509890-54510350 chr12:54639640-54639890 chr12:54873220-54873580 chr12:54879460-54880650 chr12:54666690-54668610 chr12:54258410-54260540 chr12:54581820-54582020

Promoter:

chr12:54278133-54282133

 ChIP-seq based regulatory details of CBX5
Sample ID CR Biosample type Biosample term name File accession Experiment accession Source
CR_01_0250 CBX5 cell line K562 ENCFF002BEY ENCSR272JAT Encode
CR_01_0251 CBX5 cell line K562 ENCFF002BEZ ENCSR272JAT Encode
CR_01_0401 CBX5 cell line GM12878 ENCFF354VZR ENCSR372GIN Encode
CR_01_0614 CBX5 cell line GM12878 ENCFF887BKA ENCSR372GIN Encode
CR_01_0929 CBX5 cell line H1-hESC ENCFF372AND ENCSR814KIO Encode
CR_01_0972 CBX5 cell line H1-hESC ENCFF650WVN ENCSR814KIO Encode
CR_02_0149 CBX5 cell line HCT116 SRR11968969 GSE152144 GEO
CR_02_0150 CBX5 cell line HCT116 SRR11968970 GSE152144 GEO
CR_02_0282 CBX5 cell line HepG2 SRR14105564 GSE170525 GEO
CR_02_0639 CBX5 cell line K562 SRR5331539 GSE96017 GEO
CR_02_0642 CBX5 cell line GM12878 SRR5338648 GSE96139 GEO
CR_02_1008 CBX5 cell line H1-hESC SRR8275147 GSE123229 GEO
CR_02_1009 CBX5 cell line H1-hESC SRR8275148 GSE123229 GEO
CR_02_1481 CBX5 cell line HepG2 SRR14105563 GSE170525 GEO
 Downstream target genes of CBX5
 Protein-protein interaction of CBX5
 Annotation of CBX5
 TCGA cancer survival map of CBX5


Calculate the hazards ratio based on Cox PH Model.
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Calculate the hazards ratio based on Cox PH Model.
We use log2(TPM + 1) for log-scale.
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