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CR Overview
ChIP-seq based regulatory details
Downstream target genes
Upstream regulatory details
PPI
Annotation
TCGA cancer survival map
Other information
Home
Browse CR of biosample
CR overview
CR:
KDM4E
Accession:
B2RXH2
Protein names:
Lysine-specific demethylase 4E
Function type:
Histone Modifier
Histone type:
Eraser
Methytor type:
Unkown
Aliases:
Unkown
PMID:
29453221
Disease:
0
Go term:
8
Pathway:
--
Hallmark:
--
Super Enhancer:
Hg38
Enhancer:
Hg38
Promoter:
chr11:95023258-95027258
Source
All
GeneMapper
BETA
ARACNe
GENIE3
Curated
Weight  
3
4
5
ChIP-seq based regulatory details of KDM4E
Sample ID
CR
Biosample type
Biosample term name
File accession
Experiment accession
Source
Downstream target genes of KDM4E
Top:
OR Weight >=
Go
Upstream regulatory details of KDM4E
Promoter
Enhancer
Super Enhancer
MicroRNA
eQTL
Common SNP
AFR
EAS
AMR
SAS
EUR
Interation
TFBS
Risk SNP
Crisps
TAD
450K
eQTL
Common SNP
AFR
EAS
AMR
SAS
EUR
Interation
TFBS
Risk SNP
Crisps
TAD
450K
eQTL
Common SNP
AFR
EAS
AMR
SAS
EUR
Interation
TFBS
Risk SNP
Crisps
TAD
450K
Protein-protein interaction of KDM4E
Annotation of KDM4E
Pathway
GoTerm
Hallmark
TCGA cancer survival map of KDM4E
Survival
BoxPlot
Survival Map
Cancer
ACC
BLCA
BRCA
CESC
CHOL
COAD
DLBC
ESCA
GBM
HNSC
KICH
KIRC
KIRP
LAML
LGG
LIHC
LUAD
LUSC
MESO
OV
PAAD
PCPG
PRAD
PEAD
SARC
SKCM
STAD
TGCT
THCA
THYM
UCEC
UCS
All
Methods
Overall Survival
Disease Free Survival (RFS)
Group Cutoff
Median
Quartile
Custom
Cutoff-High(%)
Cutoff-Low(%)
Hazards Ratio (HR)
Yes
No
Calculate the hazards ratio based on Cox PH Model.
95% Confidence Interval
Yes
No
Add the 95% CI as dotted line.
Axis Units
Months
Days
plot
Datasets Selection
ACC
BLCA
BRCA
CESC
CHOL
COAD
DLBC
ESCA
GBM
HNSC
KICH
KIRC
KIRP
LAML
LGG
LIHC
LUAD
LUSC
OV
PAAD
PCPG
PRAD
READ
SARC
SKCM
STAD
TGCT
THCA
THYM
UCEC
UCS
Reset
Add
Datasets
ACC
The plot axis-x order will follow the list.
Matched Normal data:
Match TCGA normal and GTEx data
Match TCGA normal data
|Log2FC| Cutoff:
p-value Cutoff:
Jitter Size
Calculate the hazards ratio based on Cox PH Model.
Log Scale
Yes
No
We use log2(TPM + 1) for log-scale.
plot
Dataset
(Cancer name)
All
Add
ACC
BLCA
BRCA
CESC
CHOL
COAD
DLBC
ESCA
GBM
HNSC
KICH
KIRC
KIRP
LAML
LGG
LIHC
LUAD
LUSC
MESO
OV
PAAD
PCPG
PRAD
READ
SARC
SKCM
STAD
TGCT
THCA
THYM
UCEC
UCS
UVM
Reset
Tissue Order
ACC BLCA BRCA CESC CHOL COAD DLBC ESCA GBM HNSC KICH KIRC KIRP LAML LGG LIHC LUAD LUSC MESO OV PAAD PCPG PRAD READ SARC SKCM STAD TGCT THCA THYM UCEC UCS UVM
The plot is based on the datasets of list.
Methods
Overall Survival
Disease Free Survival (RFS)
Group Cutoff
Median
Quartile
Custom
Cutoff-High(%)
Cutoff-Low(%)
Significance Level
plot
Other information of  KDM4E
Disgenet
Gad
Human Cancers (TCGA)
Cell Line (CCLE)
Normal Tissues     (GTEx)
Cell Line     (ENCODE)
Primary cell     (ENCODE)
In Vitro differentated cell (ENCODE)