CR overview
| CR: | HDAC2 | |
| Accession: | Q92769 | |
| Protein names: | Histone deacetylase 2 | |
| Function type: | Histone Modifier | |
| Histone type: | Eraser | |
| Methytor type: | Unkown | |
| Aliases: | SWI/SNF_Brg1(I), SWI/SNF_Brg1(II), SWI/SNF_Brm, NuRD, BHC, MeCP1, mSin3A, core HDAC, mSin3A-like complex, RING2-L3MBTL2, LSD-CoREST;Histone deacetylase (HDAC);ATP-dependent chromatin remodelling;HDAC | |
| PMID: | 19424149 26287468 30737378 | |
| Disease: | 21 | |
| Go term: | 74 | |
| Pathway: | 26 | |
| Hallmark: | 3 | |
| Super Enhancer: | chr6:114266902-114293386 chr6:114315917-114340633 chr6:114315963-114340400 chr6:114316741-114339430 chr6:114317289-114339384 chr6:114315393-114356832 chr6:114314853-114344782 chr6:114316661-114340732 chr6:114316274-114340348 chr6:114316257-114339872 |
|
| Enhancer: |
chr6:114291440-114291640 chr6:114314650-114316760 chr6:114179020-114180860 chr6:114053190-114054380 chr6:114389330-114390880 chr6:114442590-114444560 chr6:113963350-113965080 chr6:114317220-114319470 chr6:113965380-113967660 chr6:113969420-113971210 chr6:114083800-114085820 chr6:113671330-113671730 chr6:113682060-113683390 chr6:113684070-113684950 chr6:113685480-113686790 chr6:113768130-113769280 chr6:113786970-113787310 chr6:113879460-113879930 chr6:113885330-113887480 chr6:114018180-114019690 chr6:114094950-114096580 chr6:114133770-114136120 chr6:113785640-113786950 chr6:113916540-113918960 chr6:114014500-114016400 chr6:113891050-113892410 chr6:113955000-113957220 chr6:113957280-113958370 chr6:113989350-113991130 chr6:114362520-114363770 chr6:114249300-114250380 chr6:114005030-114007080 chr6:114011500-114012500 chr6:114039520-114042020 chr6:114106770-114108640 chr6:114139250-114141490 chr6:114209950-114210920 chr6:114337300-114339040 chr6:114370420-114371290 chr6:114487750-114489890 chr6:114683380-114685430 chr6:114685470-114686400 chr6:113772160-113772730 chr6:113815170-113815520 chr6:113816750-113817170 chr6:113847470-113848540 chr6:113845940-113846730 chr6:113907190-113909640 chr6:114364290-114365940 chr6:114420780-114422500 chr6:114465750-114467210 chr6:114514910-114516860 chr6:114602340-114604140 chr6:114717900-114720070 chr6:114747580-114749820 chr6:114844560-114845580 chr6:114959360-114960140 chr6:114097660-114099420 chr6:113960870-113962090 |
|
| Promoter: |
chr6:114009308-114013308 |
ChIP-seq based regulatory details of HDAC2
| Sample ID | CR | Biosample type | Biosample term name | File accession | Experiment accession | Source |
|---|---|---|---|---|---|---|
| CR_01_0073 | HDAC2 | cell line | H1-hESC | ENCFF000OPK | ENCSR000BNR | Encode |
| CR_01_0074 | HDAC2 | cell line | H1-hESC | ENCFF000OPL | ENCSR000BNR | Encode |
| CR_01_0094 | HDAC2 | cell line | K562 | ENCFF000QBF | ENCSR000BMG | Encode |
| CR_01_0095 | HDAC2 | cell line | K562 | ENCFF000QBN | ENCSR000BMG | Encode |
| CR_01_0103 | HDAC2 | cell line | MCF-7 | ENCFF000QNY | ENCSR000BTP | Encode |
| CR_01_0104 | HDAC2 | cell line | MCF-7 | ENCFF000QOA | ENCSR000BTP | Encode |
| CR_01_0295 | HDAC2 | cell line | A549 | ENCFF093KEW | ENCSR659LJJ | Encode |
| CR_01_0383 | HDAC2 | cell line | K562 | ENCFF315OYW | ENCSR000AQG | Encode |
| CR_01_0459 | HDAC2 | cell line | GM12878 | ENCFF533CYJ | ENCSR330OEO | Encode |
| CR_01_0478 | HDAC2 | cell line | K562 | ENCFF583ZBF | ENCSR000AQG | Encode |
| CR_01_0541 | HDAC2 | cell line | A549 | ENCFF735IUI | ENCSR659LJJ | Encode |
| CR_01_0593 | HDAC2 | cell line | GM12878 | ENCFF846FJT | ENCSR330OEO | Encode |
| CR_01_0680 | HDAC2 | cell line | H1-hESC | ENCFF000AYV | ENCSR000AVB | Encode |
| CR_01_0735 | HDAC2 | cell line | HepG2 | ENCFF000PJD | ENCSR000BMC | Encode |
| CR_01_0736 | HDAC2 | cell line | HepG2 | ENCFF000PJJ | ENCSR000BMC | Encode |
| CR_01_0956 | HDAC2 | cell line | H1-hESC | ENCFF524BES | ENCSR000AVB | Encode |
| CR_02_0088 | HDAC2 | cell line | Glioblastoma cell line | SRR10981266 | GSE144399 | GEO |
| CR_02_0102 | HDAC2 | Primary B cells | Primary B cells | SRR11087804 | GSE137666 | GEO |
| CR_02_0103 | HDAC2 | Primary B cells | Primary B cells | SRR11087805 | GSE137666 | GEO |
| CR_02_0104 | HDAC2 | Primary B cells | Primary B cells | SRR11087806 | GSE137666 | GEO |
| CR_02_0105 | HDAC2 | Primary B cells | Primary B cells | SRR11087807 | GSE137666 | GEO |
| CR_02_0106 | HDAC2 | Primary B cells | Primary B cells | SRR11087808 | GSE137666 | GEO |
| CR_02_0136 | HDAC2 | cell line | EBV-transformed LCLs | SRR11488846 | GSE148165 | GEO |
| CR_02_0137 | HDAC2 | cell line | EBV-transformed LCLs | SRR11488847 | GSE148165 | GEO |
| CR_02_0289 | HDAC2 | cell line | HepG2 | SRR14107249 | GSE170754 | GEO |
| CR_02_0299 | HDAC2 | cell line | GM12878 | SRR14253632 | GSE172224 | GEO |
| CR_02_0300 | HDAC2 | cell line | PFC | SRR14253662 | GSE172224 | GEO |
| CR_02_0301 | HDAC2 | cell line | PFC | SRR14253666 | GSE172224 | GEO |
| CR_02_0525 | HDAC2 | iPS-derived cardiomyocytes | iPS-derived cardiomyocytes | SRR4032224 | GSE85628 | GEO |
| CR_02_0526 | HDAC2 | iPS-derived cardiomyocytes | iPS-derived cardiomyocytes | SRR4032255 | GSE85631 | GEO |
| CR_02_0532 | HDAC2 | iPS-derived cardiomyocytes | iPS-derived cardiomyocytes | SRR4174892 | GSE86450 | GEO |
| CR_02_0629 | HDAC2 | Tissue | adipocyte | SRR5297588 | GSE95533 | GEO |
| CR_02_0630 | HDAC2 | Tissue | adipocyte | SRR5297590 | GSE95533 | GEO |
| CR_02_0689 | HDAC2 | cell line | A549 | SRR5832924 | GSE101248/GSE101248 | GEO |
| CR_02_0690 | HDAC2 | cell line | A549 | SRR5832925 | GSE101248/GSE101248 | GEO |
| CR_02_0781 | HDAC2 | cell line | NIH/3T3 | SRR6756859 | GSE110382/GSE110382 | GEO |
| CR_02_0890 | HDAC2 | cell line | RH4 | SRR7442606 | GSE120771 | GEO |
| CR_02_0891 | HDAC2 | cell line | RH4 | SRR7442623 | GSE120771 | GEO |
| CR_02_0892 | HDAC2 | cell line | RH4 | SRR7442624 | GSE120771 | GEO |
| CR_02_0918 | HDAC2 | None | None | SRR7895238 | GSE107886 | GEO |
| CR_02_0961 | HDAC2 | cell line | HCC3153 | SRR8082349 | GSE114597 | GEO |
| CR_02_0962 | HDAC2 | cell line | HCC3153 | SRR8082350 | GSE114597 | GEO |
| CR_02_1488 | HDAC2 | cell line | HepG2 | SRR14107248 | GSE170754/GSE170754 | GEO |
| CR_02_1498 | HDAC2 | cell line | GM12878 | SRR14253631 | GSE172224/GSE172224 | GEO |
| CR_02_1499 | HDAC2 | cell line | PFC | SRR14253661 | GSE172224/GSE172224 | GEO |
| CR_02_1500 | HDAC2 | cell line | PFC | SRR14253665 | GSE172224/GSE172224 | GEO |
| CR_02_1505 | HDAC2 | cell line | adipocyte | SRR5297589 | GSE95533/GSE95533 | GEO |
| CR_02_1506 | HDAC2 | cell line | adipocyte | SRR5297591 | GSE95533/GSE95533 | GEO |
Downstream target genes of HDAC2
Upstream regulatory details of HDAC2
Protein-protein interaction of HDAC2
Annotation of HDAC2
TCGA cancer survival map of HDAC2
Other information of HDAC2