CR overview
CR: HDAC2
Accession: Q92769
Protein names: Histone deacetylase 2
Function type: Histone Modifier
Histone type: Eraser
Methytor type: Unkown
Aliases: SWI/SNF_Brg1(I), SWI/SNF_Brg1(II), SWI/SNF_Brm, NuRD, BHC, MeCP1, mSin3A, core HDAC, mSin3A-like complex, RING2-L3MBTL2, LSD-CoREST;Histone deacetylase (HDAC);ATP-dependent chromatin remodelling;HDAC
PMID: 19424149 26287468 30737378
Disease: 21
Go term: 74
Pathway: 26
Hallmark: 3
Super Enhancer:

chr6:114266902-114293386 chr6:114315917-114340633 chr6:114315963-114340400 chr6:114316741-114339430 chr6:114317289-114339384 chr6:114315393-114356832 chr6:114314853-114344782 chr6:114316661-114340732 chr6:114316274-114340348 chr6:114316257-114339872

Enhancer:

chr6:114291440-114291640 chr6:114314650-114316760 chr6:114179020-114180860 chr6:114053190-114054380 chr6:114389330-114390880 chr6:114442590-114444560 chr6:113963350-113965080 chr6:114317220-114319470 chr6:113965380-113967660 chr6:113969420-113971210 chr6:114083800-114085820 chr6:113671330-113671730 chr6:113682060-113683390 chr6:113684070-113684950 chr6:113685480-113686790 chr6:113768130-113769280 chr6:113786970-113787310 chr6:113879460-113879930 chr6:113885330-113887480 chr6:114018180-114019690 chr6:114094950-114096580 chr6:114133770-114136120 chr6:113785640-113786950 chr6:113916540-113918960 chr6:114014500-114016400 chr6:113891050-113892410 chr6:113955000-113957220 chr6:113957280-113958370 chr6:113989350-113991130 chr6:114362520-114363770 chr6:114249300-114250380 chr6:114005030-114007080 chr6:114011500-114012500 chr6:114039520-114042020 chr6:114106770-114108640 chr6:114139250-114141490 chr6:114209950-114210920 chr6:114337300-114339040 chr6:114370420-114371290 chr6:114487750-114489890 chr6:114683380-114685430 chr6:114685470-114686400 chr6:113772160-113772730 chr6:113815170-113815520 chr6:113816750-113817170 chr6:113847470-113848540 chr6:113845940-113846730 chr6:113907190-113909640 chr6:114364290-114365940 chr6:114420780-114422500 chr6:114465750-114467210 chr6:114514910-114516860 chr6:114602340-114604140 chr6:114717900-114720070 chr6:114747580-114749820 chr6:114844560-114845580 chr6:114959360-114960140 chr6:114097660-114099420 chr6:113960870-113962090

Promoter:

chr6:114009308-114013308

 ChIP-seq based regulatory details of HDAC2
Sample ID CR Biosample type Biosample term name File accession Experiment accession Source
CR_01_0073 HDAC2 cell line H1-hESC ENCFF000OPK ENCSR000BNR Encode
CR_01_0074 HDAC2 cell line H1-hESC ENCFF000OPL ENCSR000BNR Encode
CR_01_0094 HDAC2 cell line K562 ENCFF000QBF ENCSR000BMG Encode
CR_01_0095 HDAC2 cell line K562 ENCFF000QBN ENCSR000BMG Encode
CR_01_0103 HDAC2 cell line MCF-7 ENCFF000QNY ENCSR000BTP Encode
CR_01_0104 HDAC2 cell line MCF-7 ENCFF000QOA ENCSR000BTP Encode
CR_01_0295 HDAC2 cell line A549 ENCFF093KEW ENCSR659LJJ Encode
CR_01_0383 HDAC2 cell line K562 ENCFF315OYW ENCSR000AQG Encode
CR_01_0459 HDAC2 cell line GM12878 ENCFF533CYJ ENCSR330OEO Encode
CR_01_0478 HDAC2 cell line K562 ENCFF583ZBF ENCSR000AQG Encode
CR_01_0541 HDAC2 cell line A549 ENCFF735IUI ENCSR659LJJ Encode
CR_01_0593 HDAC2 cell line GM12878 ENCFF846FJT ENCSR330OEO Encode
CR_01_0680 HDAC2 cell line H1-hESC ENCFF000AYV ENCSR000AVB Encode
CR_01_0735 HDAC2 cell line HepG2 ENCFF000PJD ENCSR000BMC Encode
CR_01_0736 HDAC2 cell line HepG2 ENCFF000PJJ ENCSR000BMC Encode
CR_01_0956 HDAC2 cell line H1-hESC ENCFF524BES ENCSR000AVB Encode
CR_02_0088 HDAC2 cell line Glioblastoma cell line SRR10981266 GSE144399 GEO
CR_02_0102 HDAC2 Primary B cells Primary B cells SRR11087804 GSE137666 GEO
CR_02_0103 HDAC2 Primary B cells Primary B cells SRR11087805 GSE137666 GEO
CR_02_0104 HDAC2 Primary B cells Primary B cells SRR11087806 GSE137666 GEO
CR_02_0105 HDAC2 Primary B cells Primary B cells SRR11087807 GSE137666 GEO
CR_02_0106 HDAC2 Primary B cells Primary B cells SRR11087808 GSE137666 GEO
CR_02_0136 HDAC2 cell line EBV-transformed LCLs SRR11488846 GSE148165 GEO
CR_02_0137 HDAC2 cell line EBV-transformed LCLs SRR11488847 GSE148165 GEO
CR_02_0289 HDAC2 cell line HepG2 SRR14107249 GSE170754 GEO
CR_02_0299 HDAC2 cell line GM12878 SRR14253632 GSE172224 GEO
CR_02_0300 HDAC2 cell line PFC SRR14253662 GSE172224 GEO
CR_02_0301 HDAC2 cell line PFC SRR14253666 GSE172224 GEO
CR_02_0525 HDAC2 iPS-derived cardiomyocytes iPS-derived cardiomyocytes SRR4032224 GSE85628 GEO
CR_02_0526 HDAC2 iPS-derived cardiomyocytes iPS-derived cardiomyocytes SRR4032255 GSE85631 GEO
CR_02_0532 HDAC2 iPS-derived cardiomyocytes iPS-derived cardiomyocytes SRR4174892 GSE86450 GEO
CR_02_0629 HDAC2 Tissue adipocyte SRR5297588 GSE95533 GEO
CR_02_0630 HDAC2 Tissue adipocyte SRR5297590 GSE95533 GEO
CR_02_0689 HDAC2 cell line A549 SRR5832924 GSE101248/GSE101248 GEO
CR_02_0690 HDAC2 cell line A549 SRR5832925 GSE101248/GSE101248 GEO
CR_02_0781 HDAC2 cell line NIH/3T3 SRR6756859 GSE110382/GSE110382 GEO
CR_02_0890 HDAC2 cell line RH4 SRR7442606 GSE120771 GEO
CR_02_0891 HDAC2 cell line RH4 SRR7442623 GSE120771 GEO
CR_02_0892 HDAC2 cell line RH4 SRR7442624 GSE120771 GEO
CR_02_0918 HDAC2 None None SRR7895238 GSE107886 GEO
CR_02_0961 HDAC2 cell line HCC3153 SRR8082349 GSE114597 GEO
CR_02_0962 HDAC2 cell line HCC3153 SRR8082350 GSE114597 GEO
CR_02_1488 HDAC2 cell line HepG2 SRR14107248 GSE170754/GSE170754 GEO
CR_02_1498 HDAC2 cell line GM12878 SRR14253631 GSE172224/GSE172224 GEO
CR_02_1499 HDAC2 cell line PFC SRR14253661 GSE172224/GSE172224 GEO
CR_02_1500 HDAC2 cell line PFC SRR14253665 GSE172224/GSE172224 GEO
CR_02_1505 HDAC2 cell line adipocyte SRR5297589 GSE95533/GSE95533 GEO
CR_02_1506 HDAC2 cell line adipocyte SRR5297591 GSE95533/GSE95533 GEO
 Downstream target genes of HDAC2
 Protein-protein interaction of HDAC2
 Annotation of HDAC2
 TCGA cancer survival map of HDAC2


Calculate the hazards ratio based on Cox PH Model.
Add the 95% CI as dotted line.
Reset Add The plot axis-x order will follow the list.


Calculate the hazards ratio based on Cox PH Model.
We use log2(TPM + 1) for log-scale.
All Add
Reset The plot is based on the datasets of list.