SEanalysis 2.0
Home
Analysis
TF regulatory analysis
Sample Comparative analysis
Pathway downstream analysis
Upstream regulatory analysis
Genomic region annotation
Search
Browser
Visualization
Download
Contact
Help
Home
Search
Searching by Super-enhancer
Species :
{{s}}
Biosample Type :
{{s}}
Tissue Type :
{{s}}
Sample Name :
{{s.name}}
Genomic region :
Search
Option explanation:
1) Biosample type:
Cell type classification.
2) Tissue type:
Sample tissue type.
3) Data sources:
Sources of data, including ENCODE, Roadmap, NCBI GEO/SRA and GGR.
4) Biosample name:
Biosample name consists of cell/tissue/cell line name, treatment condition, processing condition, etc.
5) Chromosome:
Chromosome.
6) Start position:
Genomic position of the start of super-enhancer.
7) End position:
Genomic position of the end of super-enhancer.
Searching by Sample
Species :
{{s}}
Biosample Type :
{{s}}
Tissue Type :
{{s}}
Sample Name :
{{s.name}}
Search
Searching by TF
Species :
{{s}}
Biosample Type :
{{s}}
Tissue Type :
{{s}}
Sample Name :
{{s.name}}
TF Class :
{{s}}
TF Name :
Search
Species :
Human
Mouse
TF Name :
Search
Searching by Pathway
Species :
{{s}}
Data Source :
{{s}}
Pathway Name :
{{s}}
Search
Option explanation:
Users can determine a pathway by selecting pathway source and pathway name and obtain terminal TFs of these pathways.
1) Data source:
The databases of pathways, including KEGG, Reactome, NetPath, WikiPathways, PANTHER, PID, HumanCyc, CTD, SMPDB and INOH.
2) Pathway:
Pathway name
Searching by Gene
Species :
Human
Mouse
Gene Symbol :
Search
Option explanation:
Users submit a gene symbol and identify its associated super-enhancers by four annotation strategies.
Gene Symbol:
Only gene symbol can be supported.