TF information

TF name: SOX21
TF family: HMG
Ensembl gene ID: ENSG00000125285
Ensembl protein ID: ENSP00000366144
Entrez gene ID: 11166
Database name Link Database name Link
NCBI Gene: Genecards:
Uniprot: Wikipedia:
Cosmic 3D: Geneontology:
CCLE:

Frequency of SOX21 in all biosamples
Sample ID Biosample type Tissue type Biosample name TF Frequency
Sample_02_195Cell lineStomachOCUM11

SOX21 distribution in samples’ most representative CRC
Sample ID Tissue type Biosample type Biosample name
Sample_02_195StomachCell lineOCUM1

SOX21 distribution in all CRCs
Biosample type
Biosample name
Sample ID

Genomic distribution of SEs associated with SOX21
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Mutation of SOX21
Database name Link
gnomAD: gnomAD
ExAC: ExAC
ICGC:
Database name Link
Cosmic:
Cosmic cell lines:
Depmap:

TCGA somatic mutations and clinical variants of SOX21

rsID Chr Start Stop Ref Alt Gene_region Gene_symble Effect TCGA_Occurrence
-chr139536412295364135GCCTCGTCGATGAA-exonicSOX21frameshift HNSC|1|512|0.00195
-chr139536406695364066GAexonicSOX21nonsynonymous LIHC|1|373|0.00268
-chr139536414095364140CTexonicSOX21nonsynonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204
-chr139536424695364246GAexonicSOX21nonsynonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204
-chr139536418395364183GAexonicSOX21nonsynonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr139536370795363707GAexonicSOX21synonymous LIHC|1|373|0.00268
-chr139536424595364245CTexonicSOX21nonsynonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204
-chr139536413895364138GAexonicSOX21nonsynonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204
rs763745908chr139536406295364062CTexonicSOX21nonsynonymous UCEC|1|248|0.00403
-chr139536423695364236CAexonicSOX21nonsynonymous HNSC|1|512|0.00195
-chr139536418295364182CTexonicSOX21nonsynonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr139536417495364174CGexonicSOX21nonsynonymous ESCA|1|185|0.00541
rs765306743chr139536405295364052CTexonicSOX21synonymous COADREAD|1|489|0.00204,READ|1|122|0.00820
rs868709277chr139536365695363656GAexonicSOX21synonymous LIHC|1|373|0.00268
-chr139536421795364217CAexonicSOX21nonsynonymous UCEC|1|248|0.00403
-chr139536414795364147CAexonicSOX21stopgain LUAD|1|543|0.00184
-chr139536380895363809CG-exonicSOX21frameshift THCA|1|504|0.00198
-chr139536421495364214GAexonicSOX21synonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204
-chr139536414095364140CAexonicSOX21nonsynonymous LUAD|1|543|0.00184
-chr139536422295364222GAexonicSOX21stopgain SKCM|1|368|0.00272
-chr139536413595364135AGexonicSOX21nonsynonymous STAD|1|395|0.00253,STES|1|395|0.00253
-chr139536402895364028GAexonicSOX21synonymous UCEC|1|248|0.00403
-chr139536417195364171CGexonicSOX21nonsynonymous CESC|1|194|0.00515
-chr139536382795363827AGexonicSOX21synonymous LIHC|1|373|0.00268
-chr139536382495363824GAexonicSOX21synonymous THCA|1|504|0.00198
-chr139536411795364117GAexonicSOX21nonsynonymous COAD|1|367|0.00272,COADREAD|1|489|0.00204

Disease information of SOX21
TF_name Disease_name Disease_class Disease_semantic_type TF_disease_source

Pathway associated with SOX21
pathway_ID pathway_name pathway_source gene_number edge_number

Go term information of SOX21
GO_term_name GO_term_type TF_name

Survival analysis of SOX21



Calculate the hazards ratio based on Cox PH Model.
Add the 95% CI as dotted line.

Expression of SOX21